BAC Information

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BAC

Clone NameB6Ng01-136I13
Chromosome11 (Build37)
Map Location 81,805,170 - 81,987,077
singlet/doubletdoublet
Overlap geneCcl2, Ccl7, Ccl11, Ccl12, Ccl8
Upstream geneAccn1, 1700071K01Rik, 5530401A14Rik
Downstream geneCcl1, Tmem132e, Cct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136I13.bB6Ng01-136I13.g
ACCDH936282DH936283
length1,121971
definitionDH936282|Mus musculus domesticus DNA, BAC clone: B6Ng01-136I13, 5' end.DH936283|Mus musculus domesticus DNA, BAC clone: B6Ng01-136I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,805,170 - 81,806,309)(81,986,104 - 81,987,077)
sequence
gaattctcatgaatgcagcataccgcctctcagataacttagaatttcca
tttctgttaccagtgctctctgccctggctcttatggtatctcaactgga
ccagtctcttctttggtatcatcagagtggttcagtccattttcagttgc
tataacagaataccacaaggtgcatactttataaacaataaaagttttgg
cttgtagttgcagccagtgtgacacctgcagaaggcctccagacagaaat
ataaacaagatggagacaggtggacttgcacctaccagcaacctactcct
tcttggaatcaggaggcaataccctcataacctagtcaccttgatagtct
caccacttcatacttctccaatgacaatttaatttcaatgtgagtttgga
gggattttgaaccacaacgtagataacatcttttaaggacaaagtgggtc
aaacagactcatataacaactattctaaacaataaagtgcacccgaaagc
cacccacagtctagtctaacttagacagtgtcacctgtgtctaatgatac
cctcacccctcagcctcacaggctactcacacactcaagcccatctgagc
tcccctgctctcctgttatgttttcttctcccccagaatgttcccttagc
tctaccaccaactgctgggctccactgcctggagaatggggaactcttag
ctatatgttaaaactcagtccagctgtttgtattgctgttgctgtcattg
ttcttggtttgtttgtttgtttgtttttcgttagactctatcaacttcac
tgtgacgactcagctggaacctgtcattgctatagttctaaagctttctg
cacaaagaaaatatactttagatagctaggatgatgtcaattgtcaaatt
gacagggtctagaattgccaagattctgcatctgtttgtgagggagtttc
tagatttgctgattaggtgggaagacccaccctgactgttgactgcattg
ggaagtgagccagggaagcaagcgtcatctcctttgctactggtgtcggt
aactgatgtcccactgctttctcagtgatatgttctttgagtctaagcac
aaccttctccttaagtggctt
gaattcctggcaaaagagagggacaaaaggcaagagaggtcatggaggag
aaagatgggctggcttcctcagcctgagtcactcctgggatacaaatggt
agcaatggtggctgtagttgaacagccagcacaaaagagctttagaggcc
ccaaaccattctgtctcggttaaccttattctctcttcctgtgctggcct
gtttatctaggagaagtgcacacagggaacagtgtaaagattttctctca
ggtttagtcatgaccaaattgtaaggtagaggtccccacgttcagtgaga
ccagaaaatgcaagagggaagccatgttgtgcagcacaggccactgatgc
ctcattatctcatgagtgcccagaggggatagagaacaggacagtgtctc
atgagcttactgtaggtagccagcaagctaaagactgatttgtgcctgct
ttctccaatctgagaaagaaaaccataaaagaaggctttgccctagttat
gtatttggttctgaggaggcatatgtcttaatcatcatgtctatttgatg
aatgagaaaatggaggtatagagaggttcaatagtgtgcccaaagcccca
aggaaagggggcagtgaaggcagaaggctaagccagtcagcgttgatgta
aacacttctgtgtagccatcggaggcttttgccaagcacagttctgtgtg
aaagtccagtgcttgaactgatcgggtcacgttctgatggcagggctttg
cacaccactcatcacatgccacatcgtggtctatgcgtttctgctcctct
gatcaaggcagacatatttcctagtttggggactatcagtacgtgaggct
ctgatgggggagagagagggtcaggaagacattccctcccggttctggag
ctccctgggggagaatggagcaaggatggaggaggatgtgaaactgggca
aggtgtacagcaacagtggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_81805170_81806309
seq2: B6Ng01-136I13.b_46_1166

seq1  GAATTCTCATGAATGCAGCATACCGCCTCTCAGATAACTTAGAATTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGAATGCAGCATACCGCCTCTCAGATAACTTAGAATTTCCA  50

seq1  TTTCTGTTACCAGTGCTCTCTGCCCTGGCTCTTATGGTATCTCAACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTACCAGTGCTCTCTGCCCTGGCTCTTATGGTATCTCAACTGGA  100

seq1  CCAGTCTCTTCTTTGGTATCATCAGAGTGGTTCAGTCCATTTTCAGTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCTTCTTTGGTATCATCAGAGTGGTTCAGTCCATTTTCAGTTGC  150

seq1  TATAACAGAATACCACAAGGTGCATACTTTATAAACAATAAAAGTTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGAATACCACAAGGTGCATACTTTATAAACAATAAAAGTTTTGG  200

seq1  CTTGTAGTTGCAGCCAGTGTGACACCTGCAGAAGGCCTCCAGACAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGTTGCAGCCAGTGTGACACCTGCAGAAGGCCTCCAGACAGAAAT  250

seq1  ATAAACAAGATGGAGACAGGTGGACTTGCACCTACCAGCAACCTACTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAGATGGAGACAGGTGGACTTGCACCTACCAGCAACCTACTCCT  300

seq1  TCTTGGAATCAGGAGGCAATACCCTCATAACCTAGTCACCTTGATAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAATCAGGAGGCAATACCCTCATAACCTAGTCACCTTGATAGTCT  350

seq1  CACCACTTCATACTTCTCCAATGACAATTTAATTTCAATGTGAGTTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTTCATACTTCTCCAATGACAATTTAATTTCAATGTGAGTTTGGA  400

seq1  GGGATTTTGAACCACAACGTAGATAACATCTTTTAAGGACAAAGTGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTGAACCACAACGTAGATAACATCTTTTAAGGACAAAGTGGGTC  450

seq1  AAACAGACTCATATAACAACTATTCTAAACAATAAAGTGCACCCGAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACTCATATAACAACTATTCTAAACAATAAAGTGCACCCGAAAGC  500

seq1  CACCCACAGTCTAGTCTAACTTAGACAGTGTCACCTGTGTCTAATGATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACAGTCTAGTCTAACTTAGACAGTGTCACCTGTGTCTAATGATAC  550

seq1  CCTCACCCCTCAGCCTCACAGGCTACTCACACACTCAAGCCCATCTGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCCCTCAGCCTCACAGGCTACTCACACACTCAAGCCCATCTGAGC  600

seq1  TCCCCTGCTCTCCTGTTATGTTTTCTTCTCCCCCAGAATGTTCCCTTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGCTCTCCTGTTATGTTTTCTTCTCCCCCAGAATGTTCCCTTAGC  650

seq1  TCTACCACCAACTGCTGGGCTCCACTGCCTGGAGAATGGGGAACTCTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCACCAACTGCTGGGCTCCACTGCCTGGAGAATGGGGAACTCTTAG  700

seq1  CTATATGTTAAAACTCAGTCCAGCTGTTTGTATTGCTGTTGCTGTCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGTTAAAACTCAGTCCAGCTGTTTGTATTGCTGTTGCTGTCATTG  750

seq1  TTCTTGGTTTGTTTGTTTGTTTGTTTTTCGTTAGACTCTATCAACTTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTTTGTTTGTTTGTTTGTTTTTCGTTAGACTCTATCAACTTCAC  800

seq1  TGTGACGACTCAGCTGGAACCTGTCATTGCTATAGTTCTAAAGC-TTCTG  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGACGACTCAGCTGGAACCTGTCATTGCTATAGTTCTAAAGCTTTCTG  850

seq1  CACAAAGAAAATATACTTTAGATAGCTAGGATGATGTCAATTGTCAAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGAAAATATACTTTAGATAGCTAGGATGATGTCAATTGTCAAATT  900

seq1  GACAGGGTCTAGAATTGCCAAGATTCTGCATCTGTTTGTGAGGGAGTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTCTAGAATTGCCAAGATTCTGCATCTGTTTGTGAGGGAGTTTC  950

seq1  TAGATTTGGCTGATTAAGGTGGGAAGACCCACCCTGACTGTGGACTGCAC  999
      ||||||| ||||||| ||||||||||||||||||||||||| ||||||| 
seq2  TAGATTT-GCTGATT-AGGTGGGAAGACCCACCCTGACTGTTGACTGCAT  998

seq1  TGGGAAGTGAGCCAGGGGAAGCAAGCGGTCATCTCCCTTGGCTACCTGGT  1049
      |||||||||||||| ||||||||||| ||||||| |||| |||| |||| 
seq2  TGGGAAGTGAGCCA-GGGAAGCAAGC-GTCATCT-CCTTTGCTA-CTGG-  1043

seq1  TGTCGGTAAAACATGATGTCCCACTGCCTTCCCCAGGCGATATGTTCCCT  1099
      |||||||||    |||||||||||||| ||| |   | |||||||| | |
seq2  TGTCGGTAA---CTGATGTCCCACTGCTTTCTC--AGTGATATGTT-CTT  1087

seq1  AGAGCTATAAGCAAACCAAACCCTTCCCCCTTAAGTGGCTT  1140
       ||| | ||||||   |||  |||| | |||||||||||||
seq2  TGAG-TCTAAGCA---CAA--CCTT-CTCCTTAAGTGGCTT  1121

seq1: chr11_81986104_81987077
seq2: B6Ng01-136I13.g_68_1038 (reverse)

seq1  TGCCACTGTTGCTGTACCACCTGCCCCAGTTTCACATCCTCCTCAATCCC  50
      |||||||||||||||| |||||  |||||||||||||||||||| |||| 
seq2  TGCCACTGTTGCTGTA-CACCTTGCCCAGTTTCACATCCTCCTCCATCCT  49

seq1  TGCTCCATTCTCCCCCAGGGAGCTCCAGAAACCGGAAGGGAATGTCTTCC  100
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  TGCTCCATTCTCCCCCAGGGAGCTCCAG-AACCGGGAGGGAATGTCTTCC  98

seq1  TGACCCTCTCTCTCCCCCATCAGAGCCTCACGTACTGATAGTCCCCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTCTCTCTCCCCCATCAGAGCCTCACGTACTGATAGTCCCCAAAC  148

seq1  TAGGGAATATGTCTGCCTTGATCAGAGGAGCAGAAACGCATAGACCACGA  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATATGTCTGCCTTGATCAGAGGAGCAGAAACGCATAGACCACGA  198

seq1  TGTGGCATGTGATGAGTGGTGTGCAAAGCCCCTGCCATCAGAACCTGACC  250
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  TGTGGCATGTGATGAGTGGTGTGCAAAG-CCCTGCCATCAGAACGTGACC  247

seq1  CGATCAGTTCAAGCACTGGACTTTCACACAGAACTGTGCTTGGCAAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCAGTTCAAGCACTGGACTTTCACACAGAACTGTGCTTGGCAAAAGC  297

seq1  CTCCGATGGCTACACAGAAGTGTTTACATCAACGCTGACTGGCTTAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGATGGCTACACAGAAGTGTTTACATCAACGCTGACTGGCTTAGCCT  347

seq1  TCTGCCTTCACTGCCCCCTTTCCTTGGGGCTTTGGGCACACTATTGAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTCACTGCCCCCTTTCCTTGGGGCTTTGGGCACACTATTGAACC  397

seq1  TCTCTATACCTCCATTTTCTCATTCATCAAATAGACATGATGATTAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATACCTCCATTTTCTCATTCATCAAATAGACATGATGATTAAGAC  447

seq1  ATATGCCTCCTCAGAACCAAATACATAACTAGGGCAAAGCCTTCTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCTCCTCAGAACCAAATACATAACTAGGGCAAAGCCTTCTTTTAT  497

seq1  GGTTTTCTTTCTCAGATTGGAGAAAGCAGGCACAAATCAGTCTTTAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTTTCTCAGATTGGAGAAAGCAGGCACAAATCAGTCTTTAGCTT  547

seq1  GCTGGCTACCTACAGTAAGCTCATGAGACACTGTCCTGTTCTCTATCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTACCTACAGTAAGCTCATGAGACACTGTCCTGTTCTCTATCCCC  597

seq1  TCTGGGCACTCATGAGATAATGAGGCATCAGTGGCCTGTGCTGCACAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCACTCATGAGATAATGAGGCATCAGTGGCCTGTGCTGCACAACA  647

seq1  TGGCTTCCCTCTTGCATTTTCTGGTCTCACTGAACGTGGGGACCTCTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCCTCTTGCATTTTCTGGTCTCACTGAACGTGGGGACCTCTACC  697

seq1  TTACAATTTGGTCATGACTAAACCTGAGAGAAAATCTTTACACTGTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATTTGGTCATGACTAAACCTGAGAGAAAATCTTTACACTGTTCCC  747

seq1  TGTGTGCACTTCTCCTAGATAAACAGGCCAGCACAGGAAGAGAGAATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCACTTCTCCTAGATAAACAGGCCAGCACAGGAAGAGAGAATAAG  797

seq1  GTTAACCGAGACAGAATGGTTTGGGGCCTCTAAAGCTCTTTTGTGCTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCGAGACAGAATGGTTTGGGGCCTCTAAAGCTCTTTTGTGCTGGC  847

seq1  TGTTCAACTACAGCCACCATTGCTACCATTTGTATCCCAGGAGTGACTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACTACAGCCACCATTGCTACCATTTGTATCCCAGGAGTGACTCA  897

seq1  GGCTGAGGAAGCCAGCCCATCTTTCTCCTCCATGACCTCTCTTGCCTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGAAGCCAGCCCATCTTTCTCCTCCATGACCTCTCTTGCCTTTT  947

seq1  GTCCCTCTCTTTTGCCAGGAATTC  974
      ||||||||||||||||||||||||
seq2  GTCCCTCTCTTTTGCCAGGAATTC  971