BAC Information

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BAC

Clone NameB6Ng01-136M05
Chromosome11 (Build37)
Map Location 43,871,504 - 44,053,481
singlet/doubletdoublet
Overlap genenone
Upstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b
Downstream geneIl12b, Ublcp1, 3732413I11Rik, Ebf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136M05.bB6Ng01-136M05.g
ACCDH936450DH936451
length1,1371,082
definitionDH936450|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M05, 5' end.DH936451|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,052,328 - 44,053,481)(43,871,504 - 43,872,601)
sequence
gaattctctggaatgagaagcaggaatgattttgatggttgtctgataca
tgcagtctgaggcctcaaaggacaggaatgagcaccacgtcagatgtgtg
ctgcagtttagctgcttggtcacctatggaggcatttgtagaagtctaag
gacccagtgtggtcattgccttacccttagcttgggcagatcagaaagtc
acaagggaccatctgtttctataagaagttaagaggaaacctgaaagaaa
agaaataaggtgcttttgctaaaactcaataaaagggaagcgaagcatct
ggaaacaccacactcccacgctcacaggacttcatgggtaagcaaatctg
ctattggtttcagaggaatgggtgtgaatggcacttccattatgcacttc
cactatgcactattcacatttcacaataggccagtgggtagagctatcca
aacttcagcctgtacctggtaagtgagggtggggcccggggaggaggaac
ctaaaattctcagccttcctctttccttattaggcacttctttatcagca
gagtccctcatacctccaaacttcttctttgagttgggccccaggcctgg
agttctctctccttctctgctttttgttgtaatggtctcaatcttcgctg
tcaacatgaataactatggaagactgggaatgtaactcagcgtgtagaga
gcttgcctgacatgcgcagactgcgaggcatcctcagcacagcataaatt
ggatggcaatgcatgatggtaacatcagcttttgggacatagaggacaca
gctactccttcattcaaacctttcttggaacctcctcaaggtttgaagct
aaccttgagatacatgaaactgtttcacaaagcaaaccaagaacagaaca
tacacacgcatgcgtgcacacacatacacacgcacacacaatacacacac
acacatacacacacatacacacacatatacactacactgttagcataagg
atcatccaaaggaaggcctccctgttggcagtgggacaatatgaacaatg
cagcttataccagcgaccctcgcacaattcagccaccccagtacagcagc
atgctcttgccaagagaattagggaggcatgggggat
gaattctccacaaagaatgaacctgctcctgagctatgacaaagaatggt
cccatgaatacgggaggagaggaaggtgtcctccccagaaggagtggaaa
ttgtaaggtttggaggcaagcaggaccttgatctgggcgtggcaccaaag
gaggcaggattgatggacttgctggaaccagtaaatgatcaattatgaaa
tattttaggggaaatgcagtttcgctcctcttaagtagaaatgttaattg
caagaaggttaataaatatctgtagggagaaagccctagggaatttattt
tgatgaatagagaacacttgtaattatcataacgggattgtctgtaaata
aatgcttctaaaaatgcccaaattgacattttaaaaacagtttgttctct
tactcagcttagagacactctctccagaatgctaagaccttctgtatgca
ttcttagcctttctttccctcaccccctttcctcataaaagtcctgaaag
ctcttaggagtttggaattctccaggtcagtatcagacacatttttaact
gaattatcccaaaaattcaatttctggatttgggagtggggagtgacctt
atgctggttagtttgtttatttatttattcattcattcattcattgtcaa
tttaataggaagtagagtcattgggaagaggaaatctcagttgagaaaat
gactatcatattggcctataggcaagtctatggggggcagtttcttaatt
agggattgttgtggaaaagcttagctcactgtgggtggagccaccaatgg
gcatgtggtctttggatatataagaaatcaggctgagcaagccatgggga
acaaggcagtaagcagcatttctgtcacagtaagcagtgttccttcatgg
cctctgctttagttcttgccttcatttctaccccaactttcttcatgttg
cactgtatctggagcaaataatccctttcttctcagtttcttttggtccc
gtatttacttatagcataggaacccaggtaggcaggtagtcttaatgtaa
ctcattattgatgacaggatattccactttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_44052328_44053481
seq2: B6Ng01-136M05.b_48_1184 (reverse)

seq1  ATCCCCCATGCCCTCCCTACTTCTCCTTGGGCAAGAGCATGGCTTGCCTG  50
      |||||||||| |||||||| |||||  | ||||||||||| |||   |||
seq2  ATCCCCCATG-CCTCCCTAATTCTC--TTGGCAAGAGCAT-GCT--GCTG  44

seq1  TGACTGTGGGTGGCTGAATTTGTGCAGGGGTCGCTGGGATAAGCTGCCAT  100
      | |||| ||||||||||| ||||||  |||||||||| |||||||||  |
seq2  T-ACTG-GGGTGGCTGAA-TTGTGCGAGGGTCGCTGGTATAAGCTGCATT  91

seq1  GGTCACTAATGTCCCACTGGCAAACAGGGAGGCCCTTCCTTTGGATGATC  150
      | ||| || ||||||||| || |||||||||| |||||||||||||||| 
seq2  GTTCA-TATTGTCCCACT-GCCAACAGGGAGG-CCTTCCTTTGGATGAT-  137

seq1  CCTTATGCTAACAGTGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  200
      |||||||||||||||||||||| | ||||||||| ||||||||| |||||
seq2  CCTTATGCTAACAGTGTAGTGTATATGTGTGTGTATGTGTGTGTATGTGT  187

seq1  GTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGCACGCATGCGTGTGT  250
      |||||||| | ||||||||||||||| |||||||||||||||||||||||
seq2  GTGTGTGTAT-TGTGTGTGCGTGTGTATGTGTGTGCACGCATGCGTGTGT  236

seq1  ATGTTCTGTTTCTTGGTTTTGCTTTGTGGAAACAGTTTCATGTATCTCAA  300
      |||||||| ||||||| |||||||||| ||||||||||||||||||||||
seq2  ATGTTCTG-TTCTTGG-TTTGCTTTGT-GAAACAGTTTCATGTATCTCAA  283

seq1  GGTTAGCTTCAAACCTTGAGGAGGTTCCAAGGAAGGTTTGAATGAAGGAG  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTTAGCTTCAAACCTTGAGGAGGTTCCAAGAAAGGTTTGAATGAAGGAG  333

seq1  TAGCTGTGTCCTCTATGTCCCAAAAGCTGATGTTACCATCATGCATTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGTCCTCTATGTCCCAAAAGCTGATGTTACCATCATGCATTGCC  383

seq1  ATCCAATTTATGCTGTGCTGAGGATGCCTCGCAGTCTGCGCATGTCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATTTATGCTGTGCTGAGGATGCCTCGCAGTCTGCGCATGTCAGGC  433

seq1  AAGCTCTCTACACGCTGAGTTACATTCCCAGTCTTCCATAGTTATTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTCTACACGCTGAGTTACATTCCCAGTCTTCCATAGTTATTCATG  483

seq1  TTGACAGCGAAGATTGAGACCATTACAACAAAAAGCAGAGAAGGAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGCGAAGATTGAGACCATTACAACAAAAAGCAGAGAAGGAGAGAG  533

seq1  AACTCCAGGCCTGGGGCCCAACTCAAAGAAGAAGTTTGGAGGTATGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGGCCTGGGGCCCAACTCAAAGAAGAAGTTTGGAGGTATGAGGG  583

seq1  ACTCTGCTGATAAAGAAGTGCCTAATAAGGAAAGAGGAAGGCTGAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCTGATAAAGAAGTGCCTAATAAGGAAAGAGGAAGGCTGAGAATT  633

seq1  TTAGGTTCCTCCTCCCCGGGCCCCACCCTCACTTACCAGGTACAGGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTCCTCCTCCCCGGGCCCCACCCTCACTTACCAGGTACAGGCTGA  683

seq1  AGTTTGGATAGCTCTACCCACTGGCCTATTGTGAAATGTGAATAGTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGATAGCTCTACCCACTGGCCTATTGTGAAATGTGAATAGTGCAT  733

seq1  AGTGGAAGTGCATAATGGAAGTGCCATTCACACCCATTCCTCTGAAACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGTGCATAATGGAAGTGCCATTCACACCCATTCCTCTGAAACCA  783

seq1  ATAGCAGATTTGCTTACCCATGAAGTCCTGTGAGCGTGGGAGTGTGGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGATTTGCTTACCCATGAAGTCCTGTGAGCGTGGGAGTGTGGTGT  833

seq1  TTCCAGATGCTTCGCTTCCCTTTTATTGAGTTTTAGCAAAAGCACCTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATGCTTCGCTTCCCTTTTATTGAGTTTTAGCAAAAGCACCTTAT  883

seq1  TTCTTTTCTTTCAGGTTTCCTCTTAACTTCTTATAGAAACAGATGGTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTCAGGTTTCCTCTTAACTTCTTATAGAAACAGATGGTCCC  933

seq1  TTGTGACTTTCTGATCTGCCCAAGCTAAGGGTAAGGCAATGACCACACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACTTTCTGATCTGCCCAAGCTAAGGGTAAGGCAATGACCACACTG  983

seq1  GGTCCTTAGACTTCTACAAATGCCTCCATAGGTGACCAAGCAGCTAAACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTAGACTTCTACAAATGCCTCCATAGGTGACCAAGCAGCTAAACT  1033

seq1  GCAGCACACATCTGACGTGGTGCTCATTCCTGTCCTTTGAGGCCTCAGAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACACATCTGACGTGGTGCTCATTCCTGTCCTTTGAGGCCTCAGAC  1083

seq1  TGCATGTATCAGACAACCATCATCATCATTCCTGCTTCTCATTCCAGAGA  1150
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  TGCATGTATCAGACAACCATCAAAATCATTCCTGCTTCTCATTCCAGAGA  1133

seq1  ATTC  1154
      ||||
seq2  ATTC  1137

seq1: chr11_43871504_43872601
seq2: B6Ng01-136M05.g_69_1150

seq1  GAATTCTCCACAAAGAATGAACCTGCTCCTGAGCTATGACAAAGAATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACAAAGAATGAACCTGCTCCTGAGCTATGACAAAGAATGGT  50

seq1  CCCATGAATACGGGAGGAGAGGAAGGTGTCCTCCCCAGAAGGAGTGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAATACGGGAGGAGAGGAAGGTGTCCTCCCCAGAAGGAGTGGAAA  100

seq1  TTGTAAGGTTTGGAGGCAAGCAGGACCTTGATCTGGGCGTGGCACCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGTTTGGAGGCAAGCAGGACCTTGATCTGGGCGTGGCACCAAAG  150

seq1  GAGGCAGGATTGATGGACTTGCTGGAACCAGTAAATGATCAATTATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGATTGATGGACTTGCTGGAACCAGTAAATGATCAATTATGAAA  200

seq1  TATTTTAGGGGAAATGCAGTTTCGCTCCTCTTAAGTAGAAATGTTAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGGGGAAATGCAGTTTCGCTCCTCTTAAGTAGAAATGTTAATTG  250

seq1  CAAGAAGGTTAATAAATATCTGTAGGGAGAAAGCCCTAGGGAATTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGTTAATAAATATCTGTAGGGAGAAAGCCCTAGGGAATTTATTT  300

seq1  TGATGAATAGAGAACACTTGTAATTATCATAACGGGATTGTCTGTAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATAGAGAACACTTGTAATTATCATAACGGGATTGTCTGTAAATA  350

seq1  AATGCTTCTAAAAATGCCCAAATTGACATTTTAAAAACAGTTTGTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCTAAAAATGCCCAAATTGACATTTTAAAAACAGTTTGTTCTCT  400

seq1  TACTCAGCTTAGAGACACTCTCTCCAGAATGCTAAGACCTTCTGTATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGCTTAGAGACACTCTCTCCAGAATGCTAAGACCTTCTGTATGCA  450

seq1  TTCTTAGCCTTTCTTTCCCTCACCCCCTTTCCTCATAAAAGTCCTGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGCCTTTCTTTCCCTCACCCCCTTTCCTCATAAAAGTCCTGAAAG  500

seq1  CTCTTAGGAGTTTGGAATTCTCCAGGTCAGTATCAGACACATTTTTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGGAGTTTGGAATTCTCCAGGTCAGTATCAGACACATTTTTAACT  550

seq1  GAATTATCCCAAAAATTCAATTTCTGGATTTGGGAGTGGGGAGTGACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATCCCAAAAATTCAATTTCTGGATTTGGGAGTGGGGAGTGACCTT  600

seq1  ATGCTGGTTAGTTTGTTTATTTATTTATTCATTCATTCATTCATTGTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGTTAGTTTGTTTATTTATTTATTCATTCATTCATTCATTGTCAA  650

seq1  TTTAATAGGAAGTAGAGTCATTGGGAAGAGGAAATCTCAGTTGAGAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAGGAAGTAGAGTCATTGGGAAGAGGAAATCTCAGTTGAGAAAAT  700

seq1  GACTATCATATTGGCCTATAGGCAAGTCTATGGGGGGCAGTTTCTTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATCATATTGGCCTATAGGCAAGTCTATGGGGGGCAGTTTCTTAATT  750

seq1  AGGGATTGTTGTGGAAAAGCTTAGCTCACTGTGGGTGGAGCCACCAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTGTTGTGGAAAAGCTTAGCTCACTGTGGGTGGAGCCACCAATGG  800

seq1  GCATGTGGTCCTTGGATATATAAGAAATCAGGCTGAGCAAGCCATGGGGA  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGGTCTTTGGATATATAAGAAATCAGGCTGAGCAAGCCATGGGGA  850

seq1  ACAAGGCAGTAAGCAGCA-TTCTGTCACAGTAAGCAGTGTTCCTTCATGG  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACAAGGCAGTAAGCAGCATTTCTGTCACAGTAAGCAGTGTTCCTTCATGG  900

seq1  CCTCTGCTTTAGTTCCTGCCTTCAATTTCTACCCCAACCTTCCTTCATGG  949
      ||||||||||||||| ||||||| ||||||||||||| ||| ||||||| 
seq2  CCTCTGCTTTAGTTCTTGCCTTC-ATTTCTACCCCAA-CTTTCTTCATGT  948

seq1  TGCACTGTATCTTGGGAAGCAAAATAAACCCTTTCCTCTCCAGGTTTCTT  999
      ||||||||||||   | ||| |||||| ||||||| ||||   |||||||
seq2  TGCACTGTATCT---GGAGC-AAATAATCCCTTTCTTCTC--AGTTTCTT  992

seq1  TTGGTCCCCGTATTTAC-TATAGCAATAGGAACCCAAGTAGGACAAGGGT  1048
      ||||| ||||||||||| |||||| ||||||||||| ||||| ||  |||
seq2  TTGGT-CCCGTATTTACTTATAGC-ATAGGAACCCAGGTAGG-CA--GGT  1037

seq1  AGTCCTAGAATGATACTCATTATATGAATGACAGGAGTATTCCACTTTGC  1098
      |||| |  ||||  ||||||||| || ||||||||| |||||||||||||
seq2  AGTCTT--AATGTAACTCATTAT-TG-ATGACAGGA-TATTCCACTTTGC  1082