BAC Information

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BAC

Clone NameB6Ng01-137G03
Chromosome11 (Build37)
Map Location 39,249,416 - 39,356,651
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137G03.bB6Ng01-137G03.g
ACCDH936915DH936916
length6901,051
definitionDH936915|Mus musculus domesticus DNA, BAC clone: B6Ng01-137G03, 5' end.DH936916|Mus musculus domesticus DNA, BAC clone: B6Ng01-137G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,355,962 - 39,356,651)(39,249,416 - 39,250,472)
sequence
gaattcataggatagaccaaaatgattagaatgcaagtgaattctaaaaa
aaaaaaaaacaggaaagaaaaataacacagtaaaagcatatgaaatcatt
taagaaaaagaagcccatattctcaaagacaatattatagtacttagaaa
ataaatatgaagacagaggtctgtgtacaaaataaaagatatcacacaca
atcatctcatgaataaaactcaatatatccttgtggcatgatgagaagat
atttatctctcagtgttaacatacataacatcttccacttgatatagtat
ttgcaagcttttatctaatagagtttgactactgggtatacactgcaaaa
gaaatttgtatattgtgcttgcaatatgatattatttttattatgtaccg
ctacaaaatgttaaaaggacaatatttactttctacatttggctctctct
atatctatctctctatgtagatatgtatgtgtgtttataaaaatatcaat
ttcttttttcttttttatgtttttagagctttattgtagaaaggcagggg
aaagagagagagagagagagagagagagagagaagacaggctaaagagta
agaaagagagtaagagggtgagagagtaaaagagtgagaagatgaggaga
ggacagaatgaggagagaggatgaggaggagaggagagaa
gaattctagaaggtaggactggggagggggacaacatatggaatgtaaac
aaaataaaactagttaaaaactaaaataaaaatgagtaaggacatataac
attacatttttataacatttaaatttacagaaagtaaactgtaagcacaa
taaaacatttatcaaaggaaatcagctgcactgtgggtcttttgtctgta
gtgaccaggacagaagtggtcactattatggttcttttctgccagaatcc
agactcagttcatctccttcttaatgcttatgtcaaagggattgtttcca
acaggtcaaactgtcaagctattaaatccacaattgatatcctcatcaca
tttctcataactgtgcataattaacatgccttggtgtagagctacacccc
acacttaagagagaagacagatttcttttcattaaacattattcctctca
aaaagttttttttctattctctactccccattttcacctatttttctcag
aaatgagatacctgacagatgtgaagatggtttagaaagccattttggtc
ttcataagaactgtaaatcttttcttgactgaattcacaaacagataatc
accaaaattttattatttcttaacttctattaaagtctttatgaaacacc
agcaaagtattttattggcaagatcatatgtgatattaaaatgttattta
attatattcaagaaaggttatttgtgggcaatgggctacgcacagacagc
ttggtctccagtcgagctgagatctttgaacccagtgaaacccggtggtg
atcatttttcacctacatgggaagaaaggccttccctcatgtctcctgga
cccctgcttcctgtgaagtactgcaaccaaaacagccctccttccccccc
tcccccagagaggcttgtggctagcagtctctacacaatgtcccagcttc
tggtcttctgggctagaactcctccccccagttacctagcaacagcagat
tacagctaatattaatgggcgctgcctggacccccttgcctctctctttt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39355962_39356651
seq2: B6Ng01-137G03.b_48_737 (reverse)

seq1  TTCTCTCCTCTCCTCCTCATCCTCTCTCCTCATTCTGTCCTCTCCTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCTCTCCTCCTCATCCTCTCTCCTCATTCTGTCCTCTCCTCATC  50

seq1  TTCTCACTCTTTTACTCTCTCACCCTCTTACTCTCTTTCTTACTCTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTCTTTTACTCTCTCACCCTCTTACTCTCTTTCTTACTCTTTAG  100

seq1  CCTGTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCCCTGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCCCTGCCTT  150

seq1  TCTACAATAAAGCTCTAAAAACATAAAAAAGAAAAAAGAAATTGATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAATAAAGCTCTAAAAACATAAAAAAGAAAAAAGAAATTGATATTT  200

seq1  TTATAAACACACATACATATCTACATAGAGAGATAGATATAGAGAGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACACACATACATATCTACATAGAGAGATAGATATAGAGAGAGCC  250

seq1  AAATGTAGAAAGTAAATATTGTCCTTTTAACATTTTGTAGCGGTACATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGAAAGTAAATATTGTCCTTTTAACATTTTGTAGCGGTACATAA  300

seq1  TAAAAATAATATCATATTGCAAGCACAATATACAAATTTCTTTTGCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAATATCATATTGCAAGCACAATATACAAATTTCTTTTGCAGTG  350

seq1  TATACCCAGTAGTCAAACTCTATTAGATAAAAGCTTGCAAATACTATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCAGTAGTCAAACTCTATTAGATAAAAGCTTGCAAATACTATATC  400

seq1  AAGTGGAAGATGTTATGTATGTTAACACTGAGAGATAAATATCTTCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAAGATGTTATGTATGTTAACACTGAGAGATAAATATCTTCTCAT  450

seq1  CATGCCACAAGGATATATTGAGTTTTATTCATGAGATGATTGTGTGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACAAGGATATATTGAGTTTTATTCATGAGATGATTGTGTGTGAT  500

seq1  ATCTTTTATTTTGTACACAGACCTCTGTCTTCATATTTATTTTCTAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTATTTTGTACACAGACCTCTGTCTTCATATTTATTTTCTAAGTA  550

seq1  CTATAATATTGTCTTTGAGAATATGGGCTTCTTTTTCTTAAATGATTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATATTGTCTTTGAGAATATGGGCTTCTTTTTCTTAAATGATTTCA  600

seq1  TATGCTTTTACTGTGTTATTTTTCTTTCCTGTTTTTTTTTTTTTTAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTTACTGTGTTATTTTTCTTTCCTGTTTTTTTTTTTTTTAGAAT  650

seq1  TCACTTGCATTCTAATCATTTTGGTCTATCCTATGAATTC  690
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGCATTCTAATCATTTTGGTCTATCCTATGAATTC  690

seq1: chr11_39249416_39250472
seq2: B6Ng01-137G03.g_69_1119

seq1  GAATTCTAGAAGGTAGGACTGGGGAGGGGGACAACATATGGAATGTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAGGTAGGACTGGGGAGGGGGACAACATATGGAATGTAAAC  50

seq1  AAAATAAAACTAGTTAAAAACTAAAATAAAAATGAGTAAGGACATATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAACTAGTTAAAAACTAAAATAAAAATGAGTAAGGACATATAAC  100

seq1  ATTACATTTTTATAACATTTAAATTTACAGAAAGTAAACTGTAAGCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTTTTATAACATTTAAATTTACAGAAAGTAAACTGTAAGCACAA  150

seq1  TAAAACATTTATCAAAGGAAATCAGCTGCACTGTGGGTCTTTTGTCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATTTATCAAAGGAAATCAGCTGCACTGTGGGTCTTTTGTCTGTA  200

seq1  GTGACCAGGACAGAAGTGGTCACTATTATGGTTCTTTTCTGCCAGAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAGGACAGAAGTGGTCACTATTATGGTTCTTTTCTGCCAGAATCC  250

seq1  AGACTCAGTTCATCTCCTTCTTAATGCTTATGTCAAAGGGATTGTTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGTTCATCTCCTTCTTAATGCTTATGTCAAAGGGATTGTTTCCA  300

seq1  ACAGGTCAAACTGTCAAGCTATTAAATCCACAATTGATATCCTCATCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCAAACTGTCAAGCTATTAAATCCACAATTGATATCCTCATCACA  350

seq1  TTTCTCATAACTGTGCATAATTAACATGCCTTGGTGTAGAGCTACACCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATAACTGTGCATAATTAACATGCCTTGGTGTAGAGCTACACCCC  400

seq1  ACACTTAAGAGAGAAGACAGATTTCTTTTCATTAAACATTATTCCTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAAGAGAGAAGACAGATTTCTTTTCATTAAACATTATTCCTCTCA  450

seq1  AAAAGTTTTTTTTCTATTCTCTACTCCCCATTTTCACCTATTTTTCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTTTTTTCTATTCTCTACTCCCCATTTTCACCTATTTTTCTCAG  500

seq1  AAATGAGATACCTGACAGATGTGAAGATGGTTTAGAAAGCCATTTTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGATACCTGACAGATGTGAAGATGGTTTAGAAAGCCATTTTGGTC  550

seq1  TTCATAAGAACTGTAAATCTTTTCTTGACTGAATTCACAAACAGATAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGAACTGTAAATCTTTTCTTGACTGAATTCACAAACAGATAATC  600

seq1  ACCAAAATTTTATTATTTCTTAACTTCTATTAAAGTCTTTATGAAACACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAATTTTATTATTTCTTAACTTCTATTAAAGTCTTTATGAAACACC  650

seq1  AGCAAAGTATTTTATTGGCAAGATCATATGTGATATTAAAATGTTATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTATTTTATTGGCAAGATCATATGTGATATTAAAATGTTATTTA  700

seq1  ATTATATTCAAGAAAGGTTATTTGTGGGCAATGGGCTACGCACAGACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTCAAGAAAGGTTATTTGTGGGCAATGGGCTACGCACAGACAGC  750

seq1  TTGGTCTCCAGTCGAGCTGAGATC-TTGAACCCAGTGAAACCCGGTGGTG  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGGTCTCCAGTCGAGCTGAGATCTTTGAACCCAGTGAAACCCGGTGGTG  800

seq1  ATCA-TTTTCACCTACATGGGAAGAAAGGCCTTCCCTCATGTCTCCTGGA  848
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTCACCTACATGGGAAGAAAGGCCTTCCCTCATGTCTCCTGGA  850

seq1  CCCCTGGCTCCTGTTGAAGTTACTGCAACCAAAACAGCCCTCCTTCCCCC  898
      ||||||  ||||| ||||| ||||||||||||||||||||||||||||||
seq2  CCCCTGCTTCCTG-TGAAG-TACTGCAACCAAAACAGCCCTCCTTCCCCC  898

seq1  CCTCCCCCCAAGGAGAGGCTTGTGGCTAGCAGTCTTCTACACAATGTCCC  948
      ||||||||    |||||||||||||||||||||| |||||||||||||||
seq2  CCTCCCCC---AGAGAGGCTTGTGGCTAGCAGTC-TCTACACAATGTCCC  944

seq1  AAGCTTCTGGTCTTCT-GGCTAG-ACTCCTCCCCACAGTTACCTAGCAAC  996
       ||||||||||||||| |||||| |||||||||| |||||||||||||||
seq2  -AGCTTCTGGTCTTCTGGGCTAGAACTCCTCCCCCCAGTTACCTAGCAAC  993

seq1  AGCAAGATAACAGCCCACTATAAGGGGCGCTGCTTGGCCCCTCCTTGCTC  1046
      ||| |||| |||||  |   ||| ||||||||| ||| ||| |||||| |
seq2  AGC-AGATTACAGCTAATATTAATGGGCGCTGCCTGGACCC-CCTTGC-C  1040

seq1  TCTCTCTTTTT  1057
      |||||||||||
seq2  TCTCTCTTTTT  1051