BAC Information

Click to search

BAC

Clone NameB6Ng01-137O11
Chromosome11 (Build37)19 (Build37)
Map Location 70,334,790 - 70,335,73629,904,773 - 29,904,823
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik
Downstream genePsmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137O11.bB6Ng01-137O11.g
ACCDH937298DH937299
length946146
definitionDH937298|Mus musculus domesticus DNA, BAC clone: B6Ng01-137O11, 5' end.DH937299|Mus musculus domesticus DNA, BAC clone: B6Ng01-137O11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(70,334,790 - 70,335,736)(29,904,773 - 29,904,823)
sequence
gaattcttttgtttgtttgtttgtttctttttgtttttttcgagacaggg
tttttctgtgtagccctggaactcactctgtagaccaggctggccgagaa
ctcagagatctgcctgcctctgcctcccaagtgctgggattaaaggcctg
tgccatcactgccaggcaggaattcaatttttccaggttcttagatccaa
aatcttgttaacgtgactttccccataccaacattgaatctatgaaaatc
tgactactccccacatttcccaagtttctttgtctaaatcagctttatgt
atcatctggactatctttgcctttcttacagttgtacggtcactaaacta
taaaaggtcattcttttgtttgtttgctcagttctttgtttttgtttttg
agaccaggttttttgtttgtttgtttgtttgtttgttttccttgcgtagc
cctggtatcctggaacttgctttgcagaccaggttggtcttgaactcaca
gagatctgcctgcctctgcctcctgagtgctgagattaaaggcatgtgct
acaactgaccagcaaaaggtgattctttaaaatgtcagtattgggggcta
gagaaatggcttagccagtaaagtacttgaggtgaaaaacagggttagga
tcccttatcacctatataaaagcagtgtgggcacctgatgtggtggctca
tgcctttaatcccagcactcgaaggcagaagcagtcagatctctgtgagt
cccaggccagtcagagttatgtagtgagttccttgtctggaaaacaaaac
aaacaaaaagcagggtatgcatagcaacctaccagcaaaatgaaggtaga
gggaggaggatcaggagttcaaagccaacctgggcgggctacgtaccaac
ttggagacttcatgagtccctatctttaaaaaaaaaaaggggctgg
caggacagccagtgaaattctgtcttaaagaaacaaacaaacaaaacaga
agaatagaggatggcccggcatggcgaagcacatctttagtcccagcact
ttggagacagaggcaggcatatctctgtgagttcaaagccagcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70334790_70335736
seq2: B6Ng01-137O11.b_49_994

seq1  GAATTCTTTTGTTTGTTTGTTTGTTTGTTTTTGTTTTTTTCGAGACAGGG  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAATTCTTTTGTTTGTTTGTTTGTTTCTTTTTGTTTTTTTCGAGACAGGG  50

seq1  TTTTTCTGTGTAGCCCTGGAACTCACTCTGTAGACCAGGCTGGCCGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTGTAGCCCTGGAACTCACTCTGTAGACCAGGCTGGCCGAGAA  100

seq1  CTCAGAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCCTG  150

seq1  TGCCATCACTGCCAGGCAGGAATTCAATTTTTCCAGGTTCTTAGATCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCACTGCCAGGCAGGAATTCAATTTTTCCAGGTTCTTAGATCCAA  200

seq1  AATCTTGTTAACGTGACTTTCCCCATACCAACATTGAATCTATGAAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTTAACGTGACTTTCCCCATACCAACATTGAATCTATGAAAATC  250

seq1  TGACTACTCCCCACATTTCCCAAGTTTCTTTGTCTAAATCAGCTTTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACTCCCCACATTTCCCAAGTTTCTTTGTCTAAATCAGCTTTATGT  300

seq1  ATCATCTGGACTATCTTTGCCTTTCTTACAGTTGTACGGTCACTAAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTGGACTATCTTTGCCTTTCTTACAGTTGTACGGTCACTAAACTA  350

seq1  TAAAAGGTCATTCTTTTGTTTGTTTGCTCAGTTCTTTGTTTTTGTTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTCATTCTTTTGTTTGTTTGCTCAGTTCTTTGTTTTTGTTTTTG  400

seq1  AGACCAGGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTCCTTGCGTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTCCTTGCGTAGC  450

seq1  CCTGGTATCCTGGAACTTGCTTTGCAGACCAGGTTGGTCTTGAACTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTATCCTGGAACTTGCTTTGCAGACCAGGTTGGTCTTGAACTCACA  500

seq1  GAGATCTGCCTGCCTCTGCCTCCTGAGTGCTGAGATTAAAGGCATGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGCCTGCCTCTGCCTCCTGAGTGCTGAGATTAAAGGCATGTGCT  550

seq1  ACAACTGACCAGCAAAAGGTGATTCTTTAAAATGTCAGTATTGGGGGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGACCAGCAAAAGGTGATTCTTTAAAATGTCAGTATTGGGGGCTA  600

seq1  GAGAAATGGCTTAGCCAGTAAAGTACTTGAGGTGAAAAACAGGGTTAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGGCTTAGCCAGTAAAGTACTTGAGGTGAAAAACAGGGTTAGGA  650

seq1  TCCCTTATCACCTATATAAAAGCAGTGTGGGCACCTGATGTGGTGGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTATCACCTATATAAAAGCAGTGTGGGCACCTGATGTGGTGGCTCA  700

seq1  TGCCTTTAATCCCAGCACTCGAAGGCAGAAGCAGTCAGATCTCTGTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAATCCCAGCACTCGAAGGCAGAAGCAGTCAGATCTCTGTGAGT  750

seq1  CCCAGGCCAGTCAGAGTTATGTAGTGAG-TCCTTGTCTGGAAAACAAAAC  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCAGGCCAGTCAGAGTTATGTAGTGAGTTCCTTGTCTGGAAAACAAAAC  800

seq1  AAACAAAAAGCAGGGTATGCATAGCAACCTACCAGCAAAAGGAAGGTAGA  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAACAAAAAGCAGGGTATGCATAGCAACCTACCAGCAAAATGAAGGTAGA  850

seq1  GGGAGGAGGATCAGGAGTTCAAAGCCAACCTGGGCGGGCTACGTAGCAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGAGGAGGATCAGGAGTTCAAAGCCAACCTGGGCGGGCTACGTACCAAC  900

seq1  TTGGAGACTTCATGAGATCCTATCTTTAAAAAAAAAAAAAGGGGCTGG  947
      ||||||||||||||||  |||||||||  |||||||||||||||||||
seq2  TTGGAGACTTCATGAGTCCCTATCTTT--AAAAAAAAAAAGGGGCTGG  946

seq1: chr19_29904773_29904823
seq2: B6Ng01-137O11.g_169_221 (reverse)

seq1  CAGGCTGGCTTTGAACTCACAGAGATCTGCC--CATCTGCCTCATGAGTG  48
      |||||||||||||||||||||||||| ||||  | |||| |||   ||||
seq2  CAGGCTGGCTTTGAACTCACAGAGATATGCCTGCCTCTGTCTCCAAAGTG  50

seq1  CTG  51
      |||
seq2  CTG  53