BAC Information

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BAC

Clone NameB6Ng01-138A01
Chromosome11 (Build37)
Map Location 61,647,748 - 61,702,946
singlet/doubletdoublet
Overlap geneUlk2, Akap10
Upstream geneDhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2
Downstream geneD630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138A01.bB6Ng01-138A01.g
ACCDH937374DH937375
length1,0901,100
definitionDH937374|Mus musculus domesticus DNA, BAC clone: B6Ng01-138A01, 5' end.DH937375|Mus musculus domesticus DNA, BAC clone: B6Ng01-138A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,647,748 - 61,648,865)(61,701,839 - 61,702,946)
sequence
gaattctctttactaatagcttcacacactgccagagcactaaaagcatc
agcaggggctgagtaagatcctttggacatctgtgtcagaatcagaactg
tagagtcacgatcatgctgcatcagttcccctatccagggaagcaggctt
tgcatttgacccttaatagacttaataaagagtcacatatctaaacagat
ctcaatgaatcccgtaacaatttcaaaatggcattaataaaacccattag
tctaacaagtctgaactaaaatgaggtaaaattactgtctcaaaaatgtc
ctttccggggctggagagatagctcagcagttaagagtaccaactgctct
tccggaggtcctgagttcaaatcccagcaaacatatggtggctcacaacc
atacgtaatgagatctgatgccctcttttggagtgtctagattcagccac
agtgtacttacatataataaacaaacaaacaaacaaatctttttttttaa
tgtcctttccatgaagcaagacatggttatttacctattttaatacgaat
accactgacattcgacttccttcgattggcataagacaacaggatattct
gtggtttgagatccctgtggattatccctttgctgtgcaggattcgcatg
gctgccgcaatctgatggagaaacactctgatagtatcttcactcagagt
tcctttagctggtagaaaaggaatcacatgaataattaaacagacaaaaa
tcaaataccttttcattccattaagataattgagctgttaaagagggtac
aaaataaaaacctgggattcacatgtatttcttttgtaaatttaacaagc
aaaatctaaaatgacaataaatttctaaaaaaaacccaaactgatctgtt
aaagaaaactgatttgtgctttatgtggtatctttcctttttctttcata
ttttactagtcaagtctacagtacagctctgacacaaagaggtgctcaac
aaatgaaatgcccttacagacaaaaatagtttgttgacattgtcatacta
ggaaaatgttcagttcatacagcagctcatgaacacacga
gaattcagtacatagatgaggttcacagggatctgccagcctcagcttcc
caaaggctgggatcagaggtatgtaccaccatcctggccattttagcttt
ttaaaagtcttgatcttaaaatcaaaaatagaatcaaacaaacaaacaaa
aaaaaagaattaaaaaaagatgctgagattacttgagtgttacatagtta
atacttaggaaactgagttatttctttgtatttgagaatgaactttgttc
ttttgagcctagaatgaaaagacaataaaatgttccactttctgaaatat
cttataaactgacttccttcttaagtgtatttgatgactacataaaccct
gctctgtgtgtgtattacccctactcttggtgtgtttgaacacataaatg
tgtgtagacttgatgacttaccctgtgctggacttgatcttagcagtgtg
ggaaagggatttcaccaggccttaatgcctttgtcagaaattaacagtgg
catttggatgactgagaagtctagggaaatccttgaaggaaaacaaaaac
tttatcacgttgtctttgaaagtacgtattggctgtgtcaactttgtaga
aacttttttttaattgtgtgtatgtgtgactatgtgtccctgtggtcaca
catgtcatggtacagtggtgttccaaaggttggactaccactttgttgaa
gtggttttgtcttctcgccattatctgggtttgaactctggtttccagac
ttgctgctaaaagtgcctttacgcaccgagccatcttgcctgtcgtgttt
agcagtcatagcgatctttttaaatggtagctaaagtgctcgctgtgcaa
gtgtgtggccctgagtggccatccagtctaaccgaatcaacaaacttaag
caaggttcatttagttttgaggttggctcaaaaggaaagtggatggggcc
gtgaaatggctcagtggggtaaggcattgctgccaagcctgaccactgga
gtgattcctgagacccacatggagaaaggagataaatggacttcgtggag
tattcttttgacttaccaggggtctggtttatggaccctctccctcccca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61647748_61648865
seq2: B6Ng01-138A01.b_45_1134

seq1  GAATTCTCTTTACTAATAGCTTCACACACTGCCAGAGCACTAAAAGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTACTAATAGCTTCACACACTGCCAGAGCACTAAAAGCATC  50

seq1  AGCAGGGGCTGAGTAAGATCCTTTGGACATCTGTGTCAGAATCAGAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGCTGAGTAAGATCCTTTGGACATCTGTGTCAGAATCAGAACTG  100

seq1  TAGAGTCACGATCATGCTGCATCAGTTCCCCTATCCAGGGAAGCAGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCACGATCATGCTGCATCAGTTCCCCTATCCAGGGAAGCAGGCTT  150

seq1  TGCATTTGACCCTTAATAGACTTAATAAAGAGTCACATATCTAAACAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGACCCTTAATAGACTTAATAAAGAGTCACATATCTAAACAGAT  200

seq1  CTCAATGAATCCCGTAACAATTTCAAAATGGCATTAATAAAACCCATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGAATCCCGTAACAATTTCAAAATGGCATTAATAAAACCCATTAG  250

seq1  TCTAACAAGTCTGAACTAAAATGAGGTAAAATTACTGTCTCAAAAATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAAGTCTGAACTAAAATGAGGTAAAATTACTGTCTCAAAAATGTC  300

seq1  CTTTCCGGGGCTGGAGAGATAGCTCAGCAGTTAAGAGTACCAACTGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCGGGGCTGGAGAGATAGCTCAGCAGTTAAGAGTACCAACTGCTCT  350

seq1  TCCGGAGGTCCTGAGTTCAAATCCCAGCAAACATATGGTGGCTCACAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAGGTCCTGAGTTCAAATCCCAGCAAACATATGGTGGCTCACAACC  400

seq1  ATACGTAATGAGATCTGATGCCCTCTTTTGGAGTGTCTAGATTCAGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTAATGAGATCTGATGCCCTCTTTTGGAGTGTCTAGATTCAGCCAC  450

seq1  AGTGTACTTACATATAATAAACAAACAAACAAACAAATCTTTTTTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTTACATATAATAAACAAACAAACAAACAAATCTTTTTTTTTAA  500

seq1  TGTCCTTTCCATGAAGCAAGACATGGTTATTTACCTATTTTAATACGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTCCATGAAGCAAGACATGGTTATTTACCTATTTTAATACGAAT  550

seq1  ACCACTGACATTCGACTTCCTTCGATTGGCATAAGACAACAGGATATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGACATTCGACTTCCTTCGATTGGCATAAGACAACAGGATATTCT  600

seq1  GTGGTTTGAGATCCCTGTGGATTATCCCTTTGCTGTGCAGGATTCGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGAGATCCCTGTGGATTATCCCTTTGCTGTGCAGGATTCGCATG  650

seq1  GCTGCCGCAATCTGATGGAGAAACACTCTGATAGTATCTTCACTCAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCGCAATCTGATGGAGAAACACTCTGATAGTATCTTCACTCAGAGT  700

seq1  TCCTTTAGCTGGTAGAAAAGGAATCACATGAATAATTAAACAGACAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGCTGGTAGAAAAGGAATCACATGAATAATTAAACAGACAAAAA  750

seq1  TCAAATACCTTTTCATTCCATTAAGATAATTGAGCTGTTAAAGAGGGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACCTTTTCATTCCATTAAGATAATTGAGCTGTTAAAGAGGGTAC  800

seq1  AAAATAAAAACCTGGGATTCACATGTATTTCTTTTGTAAATTTAACAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAACCTGGGATTCACATGTATTTCTTTTGTAAATTTAACAAGC  850

seq1  AAAATCTAAAATGACAATAAATTTCTAAAAAAAAACCCAAACTGATCTGT  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAATCTAAAATGACAATAAATTTCT-AAAAAAAACCCAAACTGATCTGT  899

seq1  TAAAGAAAACTGATTTGTGCTTTTATTGTTGGTATCTTTTCCTTTTTTCT  950
      |||||||||||||||||||| |||||   ||||||||||  | |||||||
seq2  TAAAGAAAACTGATTTGTGC-TTTAT--GTGGTATCTTT--CCTTTTTCT  944

seq1  TTCATATTTTTACTAGTCAAGGTTCCTACAGTACAGCTCTGAACAACAAA  1000
      |||||| ||||||||||||||    |||||||||||||||| |||   ||
seq2  TTCATA-TTTTACTAGTCAAG---TCTACAGTACAGCTCTG-ACA--CAA  987

seq1  AGAGGTGCTCAACAAATGGAAATGCCCTTTACAGACCAAAAAATAAGTTT  1050
      ||||||||||||||||| ||||||||| ||||||||  |||||| |||||
seq2  AGAGGTGCTCAACAAAT-GAAATGCCC-TTACAGAC--AAAAAT-AGTTT  1032

seq1  TGTTTGACATTGGTCATACCTAGGAAAAAATGTTCAAGTTTCATACCAAG  1100
         |||||||| |||||| |||||  ||||||||||   |||||||  ||
seq2  --GTTGACATT-GTCATA-CTAGG--AAAATGTTCA--GTTCATAC--AG  1072

seq1  CAGCTCATGAACACACGA  1118
      ||||||||||||||||||
seq2  CAGCTCATGAACACACGA  1090

seq1: chr11_61701839_61702946
seq2: B6Ng01-138A01.g_64_1163 (reverse)

seq1  TGGGGAGTGAGAGGCT-CATAAACATGACCCCTGTGTAAGGTCAAAAGGA  49
      ||||||| |||||| | |||||||  |||||||| |||| ||||||| ||
seq2  TGGGGAGGGAGAGGGTCCATAAACCAGACCCCTG-GTAA-GTCAAAA-GA  47

seq1  CAACTCACAGAAGT-CAGTTATCTCCTTCTACCATGTGGGTCTCAGGGAT  98
        ||||   ||||| || ||||||||||   |||||||||||||||| ||
seq2  ATACTCCACGAAGTCCATTTATCTCCTTTCTCCATGTGGGTCTCAGGAAT  97

seq1  TCAACTCAGGTGGTCAGGCTTGGCAGCAATTGCCTTTACCCACTGAGCCA  148
         ||||  |||||||||||||||||||| ||||||  ||||||||||||
seq2  --CACTCCAGTGGTCAGGCTTGGCAGCAA-TGCCTTACCCCACTGAGCCA  144

seq1  TTTCACTGGCCCCATCCACTTTACTTTTTGAGCCAAGCCTCAAAACTGAA  198
      |||||| ||||||||||||||| | ||||||||||| |||||||||| ||
seq2  TTTCAC-GGCCCCATCCACTTT-CCTTTTGAGCCAA-CCTCAAAACT-AA  190

seq1  CTGAACCTTGCTTGAGTTTGTTGATTCGGTTAGACTGGATGGCCACTCAG  248
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGAACCTTGCTTAAGTTTGTTGATTCGGTTAGACTGGATGGCCACTCAG  240

seq1  GGCCACACACTTGCACAGCGAGCACTTTAGCTACCATTTTAAAAGATCGC  298
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGCCACACACTTGCACAGCGAGCACTTTAGCTACCATTTAAAAAGATCGC  290

seq1  TATGACTGCTAAACACGACAGGCAAGATGGCTCGGTGCGTAAAGGCACTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTGCTAAACACGACAGGCAAGATGGCTCGGTGCGTAAAGGCACTT  340

seq1  TTAGCAGCAAGTCTGGAAACCAGAGTTCAAACCCAGATAATGGCGAGAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGCAAGTCTGGAAACCAGAGTTCAAACCCAGATAATGGCGAGAAG  390

seq1  ACAAAACCACTTCAACAAAGTGGTAGTCCAACCTTTGGAACACCACTGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCACTTCAACAAAGTGGTAGTCCAACCTTTGGAACACCACTGTA  440

seq1  CCATGACATGTGTGACCACAGGGACACATAGTCACACATACACACAATTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACATGTGTGACCACAGGGACACATAGTCACACATACACACAATTA  490

seq1  AAAAAAAGTTTCTACAAAGTTGACACAGCCAATACGTACTTTCAAAGACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTTTCTACAAAGTTGACACAGCCAATACGTACTTTCAAAGACA  540

seq1  ACGTGATAAAGTTTTTGTTTTCCTTCAAGGATTTCCCTAGACTTCTCAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGATAAAGTTTTTGTTTTCCTTCAAGGATTTCCCTAGACTTCTCAGT  590

seq1  CATCCAAATGCCACTGTTAATTTCTGACAAAGGCATTAAGGCCTGGTGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAATGCCACTGTTAATTTCTGACAAAGGCATTAAGGCCTGGTGAA  640

seq1  ATCCCTTTCCCACACTGCTAAGATCAAGTCCAGCACAGGGTAAGTCATCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTCCCACACTGCTAAGATCAAGTCCAGCACAGGGTAAGTCATCA  690

seq1  AGTCTACACACATTTATGTGTTCAAACACACCAAGAGTAGGGGTAATACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACACACATTTATGTGTTCAAACACACCAAGAGTAGGGGTAATACA  740

seq1  CACACAGAGCAGGGTTTATGTAGTCATCAAATACACTTAAGAAGGAAGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGCAGGGTTTATGTAGTCATCAAATACACTTAAGAAGGAAGTC  790

seq1  AGTTTATAAGATATTTCAGAAAGTGGAACATTTTATTGTCTTTTCATTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATAAGATATTTCAGAAAGTGGAACATTTTATTGTCTTTTCATTCT  840

seq1  AGGCTCAAAAGAACAAAGTTCATTCTCAAATACAAAGAAATAACTCAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAAAAGAACAAAGTTCATTCTCAAATACAAAGAAATAACTCAGTT  890

seq1  TCCTAAGTATTAACTATGTAACACTCAAGTAATCTCAGCATCTTTTTTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGTATTAACTATGTAACACTCAAGTAATCTCAGCATCTTTTTTTA  940

seq1  ATTCTTTTTTTTTGTTTGTTTGTTTGATTCTATTTTTGATTTTAAGATCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTTTTTGTTTGTTTGTTTGATTCTATTTTTGATTTTAAGATCA  990

seq1  AGACTTTTAAAAAGCTAAAATGGCCAGGATGGTGGTACATACCTCTGATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTAAAAAGCTAAAATGGCCAGGATGGTGGTACATACCTCTGATC  1040

seq1  CCAGCCTTTGGGAAGCTGAGGCTGGCAGATCCCTGTGAACCTCATCTATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTTGGGAAGCTGAGGCTGGCAGATCCCTGTGAACCTCATCTATG  1090

seq1  TACTGAATTC  1108
      ||||||||||
seq2  TACTGAATTC  1100