BAC Information

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BAC

Clone NameB6Ng01-138I09
Chromosome11 (Build37)
Map Location 29,268,409 - 29,446,788
singlet/doubletdoublet
Overlap geneLOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a
Upstream geneCcdc85a, Efemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637
Downstream gene1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138I09.bB6Ng01-138I09.g
ACCDH937761DH937762
length1,1311,097
definitionDH937761|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I09, 5' end.DH937762|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,268,409 - 29,269,561)(29,445,690 - 29,446,788)
sequence
gaattctgtctctaggactcacatggtagaaggagataacctaattttat
aagttgtcctctgatacacacacacacacacacacacacacacacacaca
cacaccatctactaacacaaaataataagaggatgggtttttttgttttt
gtttttgtttttttgtagggtgagtcagggtcttattatgtagctctggc
tgacctggagcttgctttgtagaccaggctggcttcaaattcatagagat
ctgcctgcctctgactacagagttctgggattaaaaccatcacacctgat
aggatgaataggtacacacacacacacacacacacacacacacaccactt
cagatccatagggagtggcagtattaggagacatggccttgttggaagag
gtagaacttctgtaggtgggccttgaggtttcctatactcagattcagcc
caacgtggaagaaaccctcctcctggctggctgaagaggacagtctcctg
ttgctgcctttagatcaagatgtagaactctctcttccagcaccatgtct
acctggatgctgtcctacttctcaccatgatggtggactgaacctctgaa
actgtaagtcagccccaattaaatgtttcctaagagttgccttggtcata
gtgtctctttaaagaaatgaatcctttaactgagacagatgctctgatgg
agatgcctgttactgaaaagcaagacttaggagagcacaggttaagcaaa
gtggagccacttaggagaagagcatgaaccattcatgtgccaaacacatg
gcattagagcattttacagaaataaattgggggttagttactatgtgact
gcaaagagtgcttcattttcatagactgctttcggaaagagacttttgac
tcaggggtaaacaggagttccctggctaacagaagtgaaggcagcctgaa
gcatgcacagtggtacagtgcagggatgttatatgaatttgagacgttgc
tttggacaaaattaaggcatttggaagacgctgtactggaatgagagacc
gctcatttcctctctgcattttttttgtgcgccaaagttactgtgttaag
cagatagtgcgcagaattgaagccaggatgc
gaattcctcctgatcagcagaggctgatctttgctggtaagcagctggaa
gatggccggactttgtctgactacaacattcaaaaggtttgtttgaggga
aaacatgcagaaaaagggatgatattgaatccactaacacttgctgagca
ctgtagctgttccatgattttaaaatatgcgatggttggttgaccctttt
tgtagagagcagtctcctgtagctcagggccaacttgaactggattcctg
agcctccttaaaattcctagtgctggagtgacaggcccaacaccacccaa
ctttttgacaggctggagttagacttgttgatgctacagtgctgctgttt
catcttccactaacaggagtccacccttcatctggtgttgagacttcggg
gtggtgctaagaaaaggaagaagaagtcttacaccactcccaagaagaac
aagcataagaggaagaaggttaagttggctgtgctgaaatactataaggt
aagtgtggtgttagcaaaacatgggttccacttggaataagatctgagca
actaacttttggaagtacttttggagttgaaagtgaactcccctttgata
tttaagtgagtttatagaattggaaacaggatttttaatttggagaactg
acttaaaccactaaaaattggtactgtgagatcaatagcttgagtcactt
aaatcaggtttcagaatatgttttgtgaaatcatcttacagtaaattctt
gttttgcaggtggatgaaaatggcaaaattagccgacttcgtcgagagtg
ttcttctgatgaatgtggtgctggagttttcatgggaagccacttttgac
aggcattactgtggcagtgttgtctgattactgcttcaacaaacagaaga
caagtagttgttgtatgcgttaataaaaagaaggaactcgtacttagtat
tgtgctttattgtacatttaaaggatgtttctttggctgtgtgatgttgt
atggagctgagctgtcaaagccaatataaaactggcatcatggctatgca
tgaaggcaaggacctaaagtcaattcttttaaggggtgtgggaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_29268409_29269561
seq2: B6Ng01-138I09.b_44_1174

seq1  GAATTCTGTCTCTAGGACTCACATGGTAGAAGGAGATAACCTAATTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTCTAGGACTCACATGGTAGAAGGAGATAACCTAATTTTAT  50

seq1  AAGTTGTCCTCTGATACACACACACACACACACACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCCTCTGATACACACACACACACACACACACACACACACACACA  100

seq1  CACACCATCTACTAACACAAAATAATAAGAGGATGGGTTTTTTTGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCATCTACTAACACAAAATAATAAGAGGATGGGTTTTTTTGTTTTT  150

seq1  GTTTTTGTTTTTTTGTAGGGTGAGTCAGGGTCTTATTATGTAGCTCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTTTGTAGGGTGAGTCAGGGTCTTATTATGTAGCTCTGGC  200

seq1  TGACCTGGAGCTTGCTTTGTAGACCAGGCTGGCTTCAAATTCATAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGGAGCTTGCTTTGTAGACCAGGCTGGCTTCAAATTCATAGAGAT  250

seq1  CTGCCTGCCTCTGACTACAGAGTTCTGGGATTAAAACCATCACACCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTCTGACTACAGAGTTCTGGGATTAAAACCATCACACCTGAT  300

seq1  AGGATGAATAGGTACACACACACACACACACACACACACACACACCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAATAGGTACACACACACACACACACACACACACACACACCACTT  350

seq1  CAGATCCATAGGGAGTGGCAGTATTAGGAGACATGGCCTTGTTGGAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCATAGGGAGTGGCAGTATTAGGAGACATGGCCTTGTTGGAAGAG  400

seq1  GTAGAACTTCTGTAGGTGGGCCTTGAGGTTTCCTATACTCAGATTCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTTCTGTAGGTGGGCCTTGAGGTTTCCTATACTCAGATTCAGCC  450

seq1  CAACGTGGAAGAAACCCTCCTCCTGGCTGGCTGAAGAGGACAGTCTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTGGAAGAAACCCTCCTCCTGGCTGGCTGAAGAGGACAGTCTCCTG  500

seq1  TTGCTGCCTTTAGATCAAGATGTAGAACTCTCTCTTCCAGCACCATGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCCTTTAGATCAAGATGTAGAACTCTCTCTTCCAGCACCATGTCT  550

seq1  ACCTGGATGCTGTCCTACTTCTCACCATGATGGTGGACTGAACCTCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGATGCTGTCCTACTTCTCACCATGATGGTGGACTGAACCTCTGAA  600

seq1  ACTGTAAGTCAGCCCCAATTAAATGTTTCCTAAGAGTTGCCTTGGTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGTCAGCCCCAATTAAATGTTTCCTAAGAGTTGCCTTGGTCATA  650

seq1  GTGTCTCTTTAAAGAAATGAATCC-TTAACTGAGACAGATGCTCTGATGG  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTGTCTCTTTAAAGAAATGAATCCTTTAACTGAGACAGATGCTCTGATGG  700

seq1  AGATGCCTGTTACTGAAAAGCAAGACTTAGGAGAGCACAGG-TAAGCAAA  748
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGATGCCTGTTACTGAAAAGCAAGACTTAGGAGAGCACAGGTTAAGCAAA  750

seq1  GTGGAGCCACTTAGGAGAAGAGCATGAACCATTCATGTGCCAAACACATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCCACTTAGGAGAAGAGCATGAACCATTCATGTGCCAAACACATG  800

seq1  GCATTTAGAGCATTTTACAGAAATAAATTGGGGGTTAGTTACTATGTGAC  848
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCA-TTAGAGCATTTTACAGAAATAAATTGGGGGTTAGTTACTATGTGAC  849

seq1  TGCAAAGAGTGCTTCA-TTTCATAGACTGCTTTCGGAAAGGAGACTTTTG  897
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  TGCAAAGAGTGCTTCATTTTCATAGACTGCTTTCGGAAA-GAGACTTTTG  898

seq1  ACCTCAGAGGGTAGACAGGAGTTTCCCTGGCTAACAGGAAGTGAAGGGCA  947
      | ||||| ||||| ||||||| |||||||||||||| |||||||| ||||
seq2  A-CTCAG-GGGTAAACAGGAG-TTCCCTGGCTAACA-GAAGTGAA-GGCA  943

seq1  GCCTGAAGCATGCACAGTGGTACAGGTGCAGGGGATGTTATAGTGAATTT  997
      |||||||||||||||||||||||| ||||| ||||||||||| |||||||
seq2  GCCTGAAGCATGCACAGTGGTACA-GTGCA-GGGATGTTATA-TGAATTT  990

seq1  GAGACTGTTTGCTTTGGACCAGAAAATTAGGGCATTTGGGAAGGACAGCT  1047
      |||||   |||||||||||   ||||||| |||||||||  | ||| |||
seq2  GAGAC--GTTGCTTTGGAC---AAAATTAAGGCATTTGG--AAGAC-GCT  1032

seq1  GTCACTGGATTGAGAGGACTGCTCATTTCTTCTCTGTCATTTTTTTGTTG  1097
      || |||||| ||||| ||| ||||||||| |||||| |||||||||  ||
seq2  GT-ACTGGAATGAGA-GACCGCTCATTTCCTCTCTG-CATTTTTTTTGTG  1079

seq1  CAGCAATAAGTTCATTGGGTTAAGCAGAT-GTGCGGCAGGATATGAAGCC  1146
      |  ||  ||||| | || ||||||||||| |||| |||| || |||||||
seq2  CGCCA--AAGTT-ACTGTGTTAAGCAGATAGTGC-GCAGAAT-TGAAGCC  1124

seq1  AGGATGC  1153
      |||||||
seq2  AGGATGC  1131

seq1: chr11_29445690_29446788
seq2: B6Ng01-138I09.g_66_1162 (reverse)

seq1  ATATTCCACAACCCCTTAAAAAGAATTGACCTTA-GTGCCTGCCATCATG  49
      |||||||   ||||||| |||||||||||| ||| || | |||| |||||
seq2  ATATTCCCACACCCCTT-AAAAGAATTGACTTTAGGTCCTTGCCTTCATG  49

seq1  CCATGCCATGATGCCAAGTTTTATATTGGCTTTGACAGCTGCAGCT-CAT  98
      |   ||||||||||| |||||||||||||||||||||||| ||||| |||
seq2  CATAGCCATGATGCC-AGTTTTATATTGGCTTTGACAGCT-CAGCTCCAT  97

seq1  ACAACATCACACAGCCAAAGAAACATTCTTTAAATGTACAATAAAGCACA  148
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACAACATCACACAGCCAAAGAAACATCCTTTAAATGTACAATAAAGCACA  147

seq1  ATACTAAGTACGAGTTCCTTCTTTTTATTAACGCATAC-ACAACTACTTG  197
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATACTAAGTACGAGTTCCTTCTTTTTATTAACGCATACAACAACTACTTG  197

seq1  TCTTCTGGTTTGTTGAAGCAGTAAGTCAGACAACACTTGCCACAGTAATG  247
      |||||| ||||||||||||||||| ||||||||||| |||||||||||||
seq2  TCTTCT-GTTTGTTGAAGCAGTAA-TCAGACAACAC-TGCCACAGTAATG  244

seq1  CCTGTC-AAAGTGGCTTCCCATGAAAACTCCAGCACCACATTCATCAGAA  296
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAAAAGTGGCTTCCCATGAAAACTCCAGCACCACATTCATCAGAA  294

seq1  GGACACTCTCGACGAAGTCGGCTAATTTTGCCATTTTCATCCACCTGCAA  346
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTCTCGACGAAGTCGGCTAATTTTGCCATTTTCATCCACCTGCAA  344

seq1  AACAAGAATTTACTGTAAGATGATTTCACAAAACATATTCTGAAACCTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAATTTACTGTAAGATGATTTCACAAAACATATTCTGAAACCTGA  394

seq1  TTTAAGTGACTCAAGCTATTGATCTCACAGTACCAATTTTTAGTGGTTTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTGACTCAAGCTATTGATCTCACAGTACCAATTTTTAGTGGTTTA  444

seq1  AGTCAGTTCTCCAAATTAAAAATCCTGTTTCCAATTCTATAAACTCACTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTCTCCAAATTAAAAATCCTGTTTCCAATTCTATAAACTCACTT  494

seq1  AAATATCAAAGGGGAGTTCACTTTCAACTCCAAAAGTACTTCCAAAAGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAAAGGGGAGTTCACTTTCAACTCCAAAAGTACTTCCAAAAGTT  544

seq1  AGTTGCTCAGATCTTATTCCAAGTGGAACCCATGTTTTGCTAACACCACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTCAGATCTTATTCCAAGTGGAACCCATGTTTTGCTAACACCACA  594

seq1  CTTACCTTATAGTATTTCAGCACAGCCAACTTAACCTTCTTCCTCTTATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTTATAGTATTTCAGCACAGCCAACTTAACCTTCTTCCTCTTATG  644

seq1  CTTGTTCTTCTTGGGAGTGGTGTAAGACTTCTTCTTCCTTTTCTTAGCAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTTCTTGGGAGTGGTGTAAGACTTCTTCTTCCTTTTCTTAGCAC  694

seq1  CACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTGTTAGTGGAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTGTTAGTGGAAG  744

seq1  ATGAAACAGCAGCACTGTAGCATCAACAAGTCTAACTCCAGCCTGTCAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAGCAGCACTGTAGCATCAACAAGTCTAACTCCAGCCTGTCAAA  794

seq1  AAGTTGGGTGGTGTTGGGCCTGTCACTCCAGCACTAGGAATTTTAAGGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGGTGGTGTTGGGCCTGTCACTCCAGCACTAGGAATTTTAAGGAG  844

seq1  GCTCAGGAATCCAGTTCAAGTTGGCCCTGAGCTACAGGAGACTGCTCTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGAATCCAGTTCAAGTTGGCCCTGAGCTACAGGAGACTGCTCTCT  894

seq1  ACAAAAAGGGTCAACCAACCATCGCATATTTTAAAATCATGGAACAGCTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGGGTCAACCAACCATCGCATATTTTAAAATCATGGAACAGCTA  944

seq1  CAGTGCTCAGCAAGTGTTAGTGGATTCAATATCATCCCTTTTTCTGCATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCAGCAAGTGTTAGTGGATTCAATATCATCCCTTTTTCTGCATG  994

seq1  TTTTCCCTCAAACAAACCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTCAAACAAACCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCC  1044

seq1  ATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAA  1094

seq1  TTC  1099
      |||
seq2  TTC  1097