BAC Information

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BAC

Clone NameB6Ng01-138M06
Chromosome11 (Build37)
Map Location 3,783,315 - 3,937,095
singlet/doubletdoublet
Overlap gene4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920
Downstream geneSec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138M06.bB6Ng01-138M06.g
ACCDH937930DH937931
length1,089174
definitionDH937930|Mus musculus domesticus DNA, BAC clone: B6Ng01-138M06, 5' end.DH937931|Mus musculus domesticus DNA, BAC clone: B6Ng01-138M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,936,010 - 3,937,095)(3,783,315 - 3,783,488)
sequence
gaattctacaagtttttgttgatcccctgggatttttttttctttctgaa
aacctataactgtttttaaaataaagtttctaaaactggtttttaaaaag
cacagagagaactgaagcgaggagcagcctccgggacaggcttcctgcgt
gtaggcctcatggcctcatctttaactcagcatcttgaagacagagacca
tggccctgcccacaacacaggccagcttttcgccaggactgtgccagcac
atgtggagtggggactcacaagcctgtcttgctgacaactatttaaacca
ggcaccttgtgcccacattctggaatgacttacccaaaatacaaactcta
tcctgtgagctaaaatcatttccccatccaccaagccctgtgccatttct
ggtattacttctccagacttctgtgacttctacgagaagccccttctcta
ccattaacttcagctcattctttgtgtttgttcaatacccccaggggact
gaagttgaaaccaagttctaaagatagtgttcaaggccaagctggggagg
ccctggggtctgctgaagccaaagacactgcggtaaaagtattagaagac
tcggacagacaaagaacagactcattaaagaaaacacatggttagtagaa
acagaaggtgaacagctctgagagaggagcagttgtcccctgagaggaaa
caacgggagttaggttttcattagagataaggggagttacttagttgtcc
acctggcctccatatctggacagaacagcaggctacttacaaagtagcag
attttacagaaccagttggttttcttgagactgaccattaggagagggac
acatagttcctttggagttgggctctagtgtttgcataagaaaccacagt
cactgggggccaggctttaggttctcagggttctggactgacagattgga
ggaaaggtcagaactaggggagaatggctcagtgacgtgttgccacacaa
gcacaagactagttcatatcctagcacctctggtaatagctcacgtgtta
ttcccaaactttggggaggcagaaggcggaaggcggagg
aggagttgtgatttttttagaggagtcctcctgccttgctcttgggtttc
catgttgtggtttgtgctgtggctgatttgggtagctcttccgtcttcat
caggacatcttagggagcagctcgctctcaggggctaaatcaccatcacc
attggggtgcggggcggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3936010_3937095
seq2: B6Ng01-138M06.b_48_1136 (reverse)

seq1  CCTCCGCCTCCGCCTCCGCC-TCTGCCTCCC--AAGTTTTGGGATTACAC  47
      |||||||||     |||||| ||||||||||  |||||| || || ||||
seq2  CCTCCGCCT-----TCCGCCTTCTGCCTCCCCAAAGTTTGGGAATAACAC  45

seq1  GTGAGCTATTA-CAGAGGTGCTAGGATATGAACTAGTCTTTGTGCTTGTG  96
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  GTGAGCTATTACCAGAGGTGCTAGGATATGAACTAGTC-TTGTGCTTGTG  94

seq1  TGGCAACACGTCACTGAGCCA-TCT-CCCTAGTTCTGACCTTTCCT-CAA  143
      ||||||||||||||||||||| ||| |||||||||||||||||||| |||
seq2  TGGCAACACGTCACTGAGCCATTCTCCCCTAGTTCTGACCTTTCCTCCAA  144

seq1  TCTGTCAGT-CAGAA-CCTGAGAACCTGAAGCCTGG-CCCCAGTGACTTG  190
      ||||||||| ||||| ||||||||||| |||||||| |||||||||| ||
seq2  TCTGTCAGTCCAGAACCCTGAGAACCTAAAGCCTGGCCCCCAGTGAC-TG  193

seq1  TGGTTTCTTATGCAAACACTAGAGCCCAACTCCAAAGGAACTATGTGTCC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTTATGCAAACACTAGAGCCCAACTCCAAAGGAACTATGTGTCC  243

seq1  CTCTCCTAATGGTCAGTCTCAAGAAAACCAACTGGTTCTGTAAAATCTGC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTAATGGTCAGTCTCAAGAAAACCAACTGGTTCTGTAAAATCTGC  293

seq1  TACTTTGTAAGTAGCCTGCTGTTCTGTCCAGATATGGAGGCCAGGTGGAC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTAAGTAGCCTGCTGTTCTGTCCAGATATGGAGGCCAGGTGGAC  343

seq1  AACTAAGTAACTCCCCTTATCTCTAATGAAAACCTAACTCCCGTTGTTTC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGTAACTCCCCTTATCTCTAATGAAAACCTAACTCCCGTTGTTTC  393

seq1  CTCTCAGGGGACAACTGCTCCTCTCTCAGAGCTGTTCACCTTCTGTTTCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGGGACAACTGCTCCTCTCTCAGAGCTGTTCACCTTCTGTTTCT  443

seq1  ACTAACCATGTGTTTTCTTTAATGAGTCTGTTCTTTGTCTGTCCGAGTCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCATGTGTTTTCTTTAATGAGTCTGTTCTTTGTCTGTCCGAGTCT  493

seq1  TCTAATACTTTTACCGCAGTGTCTTTGGCTTCAGCAGACCCCAGGGCCTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATACTTTTACCGCAGTGTCTTTGGCTTCAGCAGACCCCAGGGCCTC  543

seq1  CCCAGCTTGGCCTTGAACACTATCTTTAGAACTTGGTTTCAACTTCAGTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTGGCCTTGAACACTATCTTTAGAACTTGGTTTCAACTTCAGTC  593

seq1  CCCTGGGGGTATTGAACAAACACAAAGAATGAGCTGAAGTTAATGGTAGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGGTATTGAACAAACACAAAGAATGAGCTGAAGTTAATGGTAGA  643

seq1  GAAGGGGCTTCTCGTAGAAGTCACAGAAGTCTGGAGAAGTAATACCAGAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGCTTCTCGTAGAAGTCACAGAAGTCTGGAGAAGTAATACCAGAA  693

seq1  ATGGCACAGGGCTTGGTGGATGGGGAAATGATTTTAGCTCACAGGATAGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACAGGGCTTGGTGGATGGGGAAATGATTTTAGCTCACAGGATAGA  743

seq1  GTTTGTATTTTGGGTAAGTCATTCCAGAATGTGGGCACAAGGTGCCTGGT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATTTTGGGTAAGTCATTCCAGAATGTGGGCACAAGGTGCCTGGT  793

seq1  TTAAATAGTTGTCAGCAAGACAGGCTTGTGAGTCCCCACTCCACACGTGC  840
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTAAATAGTTGTCAGCAAGACAGGCTTGTGAGTCCCCACTCCACATGTGC  843

seq1  TGGCACAGTCCTGGCGAAAAGCTGGCCTGTGTTGTGGGCAGGGCCATGGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAGTCCTGGCGAAAAGCTGGCCTGTGTTGTGGGCAGGGCCATGGT  893

seq1  CTCTGTCTTCAAGATGCTGAGTTAAAGATGAGGCCATGAGGCCTACACGC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTTCAAGATGCTGAGTTAAAGATGAGGCCATGAGGCCTACACGC  943

seq1  AGGAAGCCTGTCCCGGAGGCTGCTCCTCGCTTCAGTTCTCTCTGTGCTTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCTGTCCCGGAGGCTGCTCCTCGCTTCAGTTCTCTCTGTGCTTT  993

seq1  TTAAAAACCAGTTTTAGAAACTTTATTTTAAAAACAGTTATAGGTTTTCA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACCAGTTTTAGAAACTTTATTTTAAAAACAGTTATAGGTTTTCA  1043

seq1  GAAAGAAAAAAAAATCCCAGGGGATCAACAAAAACTTGTAGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAAAAAATCCCAGGGGATCAACAAAAACTTGTAGAATTC  1089

seq1: chr11_3783315_3783488
seq2: B6Ng01-138M06.g_74_247

seq1  AGGAGTTGTGATTTTTTTAGAGGAGTCCTCCTGCCTTGCTCTTGGGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGTGATTTTTTTAGAGGAGTCCTCCTGCCTTGCTCTTGGGTTTC  50

seq1  CATGTTGTGGTTTGTGCTGTGGCTGATTTGGGTAGCTCTTCCGTCTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGTGGTTTGTGCTGTGGCTGATTTGGGTAGCTCTTCCGTCTTCAT  100

seq1  CAGGACATCTTAGGGAGCAGCTCGCTCTCAGGGGCTAAATCACCATCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATCTTAGGGAGCAGCTCGCTCTCAGGGGCTAAATCACCATCACC  150

seq1  ATTGGGGTGCGGGGCGGGGGGGGG  174
      ||||||||||||||||||||||||
seq2  ATTGGGGTGCGGGGCGGGGGGGGG  174