BAC Information

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BAC

Clone NameB6Ng01-138M16
Chromosome11 (Build37)3 (Build37)
Map Location 14,988,495 - 14,988,82883,481,380 - 83,482,574
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673, LOC432537
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138M16.bB6Ng01-138M16.g
ACCDH937950DH937951
length1,0491,202
definitionDH937950|Mus musculus domesticus DNA, BAC clone: B6Ng01-138M16, 5' end.DH937951|Mus musculus domesticus DNA, BAC clone: B6Ng01-138M16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,988,495 - 14,988,828)(83,481,380 - 83,482,574)
sequence
gaattctgatatagtttagccttcgccaacttcctagaaagaccttgaag
ccgacaacttggaattcagtaggaattcagtaaggaagttacctattcag
taactaattagcattacaaaagatagagccaatagctcagggcaggtctg
cagactgtttattaggacagtaaggacagtcttaaccaaataagggttta
ccatgagaaaagttagggaatcccactgagacaggtttcttcactaggcc
caaagaattcaggcagaactatagagcataaataaaatttatgcctcagt
ccagcctttcttttttatattaataacagggaggagatgtagcctccata
agactgaagcaggctgaggcaggcttgactttgttgccactaaggagatc
acctggggtggagcctgcctccctggatcactctattgttctgccactgc
cgcagctgctacctgttgcctagctgttccggagcctacacgtggtcacc
tgcagctgggctccaaggatgatttggcgggaatgggctttcccctctct
tttataaagcatgtccgccattaaaaatttgaaccttgagcagactagtt
gtcttggttccattatttctcaacccacctagatctcctcttttcttcca
ggttccaagatgccttccaggctcgagcccggacatgagaaccacaggct
ggccccaacaaccacacacatatacataatcataaattttttaaaagtaa
aacataggaaaaatctaccatgattattgccaagtcttcaatttcattac
atataagaaataagatatgatccatggaataaattaaagaaagaaataac
agattttaacataaaatgagtatttctgaatctataaaataagtaaacaa
aaattccttcaagcttaattgtatcatgagaaataaacaagtttagcatt
ttcaccaaacttatagagtacgtctggagttttttttgtttttttttttt
tttgtttttttttaaaagaaagggaagtcctttctttctttcttctttt
gaattcaactcattctcttaatctgcacagctccagtgcctcttttctaa
acaattgttttaatttgaaaaaaaaaaacccacataataaaccaggacca
tgttccatatcccatgtttctttctgtgaccacaaatgtttctaatcgtc
agaaatgcatgtagccacatagcagggcattgtctgctccactactctgc
actcactccgtggacctaattttcttatagagtaggcttcaaagagttat
gccagcctacagctctcactcagaccacagtctgcactccagcagcagca
gctgtttcaacaagacagtcattacactgaaagaaagcagagggtgaaga
catggtcatcaccagtccccggaccatcatcatgagatggtgcaccaggt
gtcctgcagcactggctgaaaagaaccaagaaccatggccttttatattt
aactccattggtattgtcttttcttcctctaactacttcataatctactt
caaacacccttgggatgaagcaagccttgttcgggcagagacaagaagac
ccttcacctactaagacccaggagacaactgaaaggtaggctcattttat
ttgttttgcctaagatatgagacatgaaaagcatttagatattttaacta
gtaaatataatcctataactaaaaagccaaaataaagatattttttaaat
tgcaaattcaggtaaaatacaggtcattcattttttgttaataccaccaa
tgaatataatcctaatttctataactaggaaatataaaagaaaaaagtca
aaatacataacagtgactgtatggaaagtattattgagagcagttatact
gatatattgagagttgggaattaagagttctttcttttcttttttatctt
ctaccatggtttctacactaagcacctgttgttactttatggtctaggaa
aagaacacatgtattcttttttgaaaaagagatgctcataaaggaaaata
atcatcccactagtcatgcatgcctaaataattcctggtagcaatttact
aaatctgctatgcacttaaattcaatatacatgtcctcaggtactactgg
aaacagcaatatcagaataccagaagtgcacacaaaaccacacctggtca
agagtgtctctctagagttaagatgataagaaacaagtgttacctataat
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_14988495_14988828
seq2: B6Ng01-138M16.b_46_380 (reverse)

seq1  TCCTCCCTGTTATTAATATTAAAACAAAATTTAAAAAACCTGGACTGAGG  50
      ||||||||||||||||||| ||||        | |||  |||||||||||
seq2  TCCTCCCTGTTATTAATATAAAAA--------AGAAAGGCTGGACTGAGG  42

seq1  CATAAAATTTTATTTATGCTCCATAGTTCTGCCTGATTTCTTTGGGCCTA  100
      ||| ||||||||||||||||| |||||||||||||| |||||||||||||
seq2  CAT-AAATTTTATTTATGCTCTATAGTTCTGCCTGAATTCTTTGGGCCTA  91

seq1  GTGAAGAAACCTGTCTCAGTGGTATTCCCTAACTTTTCTCATGGT--ACC  148
      |||||||||||||||||||||| ||||||||||||||||||||||  |||
seq2  GTGAAGAAACCTGTCTCAGTGGGATTCCCTAACTTTTCTCATGGTAAACC  141

seq1  CTTGTTTGGTTAAGACTGTCCTTACTGTTCTAGGAAACACTATGTAGACA  198
      ||| |||||||||||||||||||||||| |||  ||||| | || |||| 
seq2  CTTATTTGGTTAAGACTGTCCTTACTGTCCTAATAAACAGTCTGCAGACC  191

seq1  AGCCCTGAGCTGCTGGCTC--------------CT--TTAGTTACTGAAT  232
       ||||||||||  ||||||              ||  |||||||||||||
seq2  TGCCCTGAGCTATTGGCTCTATCTTTTGTAATGCTAATTAGTTACTGAAT  241

seq1  AGGTAACTTCCTTACTGAATTCCTACTGAATTCCAAGTAGTCGGCATCAA  282
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  AGGTAACTTCCTTACTGAATTCCTACTGAATTCCAAGTTGTCGGCTTCAA  291

seq1  GGTCTTTCTAGGACATTGGAACACTGGCAAAGGCTTAACTATATCAGAAT  332
      |||||||||||||  |        |||| |||||| ||||||||||||||
seq2  GGTCTTTCTAGGAAGT--------TGGCGAAGGCTAAACTATATCAGAAT  333

seq1  TC  334
      ||
seq2  TC  335

seq1: chr3_83481380_83482574
seq2: B6Ng01-138M16.g_69_1270

seq1  GAATTCAACTCATTCTCTTAATCTGCACAGCTCCAGTGCCTCTTTTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCATTCTCTTAATCTGCACAGCTCCAGTGCCTCTTTTCTAA  50

seq1  ACAATTGTTTTAATTTGAAAAAAAAAAACCCACATAATAAACCAGGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTTTTAATTTGAAAAAAAAAAACCCACATAATAAACCAGGACCA  100

seq1  TGTTCCATATCCCATGTTTCTTTCTGTGACCACAAATGTTTCTAATCGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATATCCCATGTTTCTTTCTGTGACCACAAATGTTTCTAATCGTC  150

seq1  AGAAATGCATGTAGCCACATAGCAGGGCATTGTCTGCTCCACTACTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCATGTAGCCACATAGCAGGGCATTGTCTGCTCCACTACTCTGC  200

seq1  ACTCACTCCGTGGACCTAATTTTCTTATAGAGTAGGCTTCAAAGAGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCCGTGGACCTAATTTTCTTATAGAGTAGGCTTCAAAGAGTTAT  250

seq1  GCCAGCCTACAGCTCTCACTCAGACCACAGTCTGCACTCCAGCAGCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTACAGCTCTCACTCAGACCACAGTCTGCACTCCAGCAGCAGCA  300

seq1  GCTGTTTCAACAAGACAGTCATTACACTGAAAGAAAGCAGAGGGTGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCAACAAGACAGTCATTACACTGAAAGAAAGCAGAGGGTGAAGA  350

seq1  CATGGTCATCACCAGTCCCCGGACCATCATCATGAGATGGTGCACCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCATCACCAGTCCCCGGACCATCATCATGAGATGGTGCACCAGGT  400

seq1  GTCCTGCAGCACTGGCTGAAAAGAACCAAGAACCATGGCCTTTTATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCAGCACTGGCTGAAAAGAACCAAGAACCATGGCCTTTTATATTT  450

seq1  AACTCCATTGGTATTGTCTTTTCTTCCTCTAACTACTTCATAATCTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATTGGTATTGTCTTTTCTTCCTCTAACTACTTCATAATCTACTT  500

seq1  CAAACACCCTTGGGATGAAGCAAGCCTTGTTCGGGCAGAGACAAGAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACCCTTGGGATGAAGCAAGCCTTGTTCGGGCAGAGACAAGAAGAC  550

seq1  CCTTCACCTACTAAGACCCAGGAGACAACTGAAAGGTAGGCTCATTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACCTACTAAGACCCAGGAGACAACTGAAAGGTAGGCTCATTTTAT  600

seq1  TTGTTTTGCCTAAGATATGAGACATGAAAAGCATTTAGATATTTTAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCCTAAGATATGAGACATGAAAAGCATTTAGATATTTTAACTA  650

seq1  GTAAATATAATCCTATAACTAAAAAGCCAAAATAAAGATATTTTTTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATAATCCTATAACTAAAAAGCCAAAATAAAGATATTTTTTAAAT  700

seq1  TGCAAATTCAGGTAAAATACAGGTCATTCA-TTTTTGTTAATACCACCAA  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGCAAATTCAGGTAAAATACAGGTCATTCATTTTTTGTTAATACCACCAA  750

seq1  TGAATATAATCCTAATTTCTATAACTAGGAAATATAAAAGAAAAAAGTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATAATCCTAATTTCTATAACTAGGAAATATAAAAGAAAAAAGTCA  800

seq1  AAATACATAACAGTGACTGTATGGAAAGTA-TATTGAGAGCAGTTATACT  848
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAATACATAACAGTGACTGTATGGAAAGTATTATTGAGAGCAGTTATACT  850

seq1  GATATATTGAGAGTT-GGAATTAAGAGTTCTTTTCTTTTCTTTTTTTATC  897
      ||||||||||||||| |||||||||||||| ||||||||| |||||||||
seq2  GATATATTGAGAGTTGGGAATTAAGAGTTC-TTTCTTTTC-TTTTTTATC  898

seq1  TTCTTACCATGGTTTTCTACACTAAGCACCTGTTGTTACCTTTATGGTCT  947
      ||| |||||||| ||||||||||||||||||||||||| |||||||||||
seq2  TTC-TACCATGG-TTTCTACACTAAGCACCTGTTGTTA-CTTTATGGTCT  945

seq1  AGGAAAAGAACACATGTATTCTTTTTTGAGAAAGAGATGCTCATAAAGGA  997
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGAAAAGAACACATGTATTCTTTTTTGAAAAAGAGATGCTCATAAAGGA  995

seq1  AAATAAATCATCCCACTAGTCATGCATGCCTAAATTATTCCTGGTAGCAA  1047
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAT-AATCATCCCACTAGTCATGCATGCCTAAATAATTCCTGGTAGCAA  1044

seq1  TTTACTAAATCTGCTATGCAC-TAAATTCAATATACATGT-CTCAGGTAC  1095
      ||||||||||||||||||||| |||||||||||||||||| |||||||| 
seq2  TTTACTAAATCTGCTATGCACTTAAATTCAATATACATGTCCTCAGGTA-  1093

seq1  CTACTTTGAACACAGC-ATA-CAGAATACCA-AGATGCACACAA---CAC  1139
      ||||  || | ||||| ||| |||||||||| |  |||||||||   |||
seq2  CTAC--TGGAAACAGCAATATCAGAATACCAGAAGTGCACACAAAACCAC  1141

seq1  AACCTGTCAAAGATGTCATCATAGAGTTAAG-TAGTAAGACA----TGTT  1184
      | |  |||||   ||||    |||||||||| |  ||||| |    ||||
seq2  ACCTGGTCAAGAGTGTCTCTCTAGAGTTAAGATGATAAGAAACAAGTGTT  1191

seq1  ACCTATAATGC  1195
      |||||||||||
seq2  ACCTATAATGC  1202