BAC Information

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BAC

Clone NameB6Ng01-139E07
Chromosome11 (Build37)
Map Location 75,507,190 - 75,557,821
singlet/doubletdoublet
Overlap geneCrk, Ywhae
Upstream genePafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c
Downstream geneDoc2b, Rph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139E07.bB6Ng01-139E07.g
ACCDH938296DH938297
length1,113983
definitionDH938296|Mus musculus domesticus DNA, BAC clone: B6Ng01-139E07, 5' end.DH938297|Mus musculus domesticus DNA, BAC clone: B6Ng01-139E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,556,700 - 75,557,821)(75,507,190 - 75,508,172)
sequence
gaattcactatgtagaccaggctgagaaatccgcctgtctctgccttcca
agtgctgggattaaaggtgtgtgcctccactgcccggcccatttgtttat
ttttgagttgggtgattgggtagcctagaattttctatgcagccaaggat
gacaccgattcctgaccctttgcctccacctcctgggtcggcttttataa
agctttaagttcagccaacataatagcacaagtgaggcagaggtatcaga
attagcaagtccaaaaaaagaaagaaagaatttcaacctgggctaattaa
ttgaacctactagttcagtttccacaacccacatggaagaaggaaagacc
ttccacaagctgtcctgagttccctatgttcaccatcattattgtgagag
tattcatcatacacagattcacaaaaaaggaaaatgtttgattatcttta
atttttttttgtttttctagacagtttttctgtgtagccctgtctatcca
ggaacttactctgtagaccaggttagccttgaattcagagatctgcctga
ctctgcctcccaaaggcatgcactaccacccagctccaccttgggttttt
aaaacaacttctctaagtggtaaggttcaacaattaggctatgacaactg
gttagggagccccagggattcatcagtccctgcctcccaagagaggatta
caaacatgctggaatgacaagcaacaactgagttttttaactggatgctg
ggatttaaactcagtgtctgtgattgtatgacaagcacttgacagactga
tctatctccccaggcccccaaagcaatttccacattataaaattaaaaac
taagaatagagctttcagtgagaggaccagcagttcaaggctgactaggt
tatgaagcaagtccagggtagcctgagttgtgcctccatgagaccttgtc
ttgaacggattgaagggggaggaaaggactggtatttacatactgccaca
acatcaatgtgaagtgtacaccacacctgactaaatccagtattgtcctc
actaactccttatttatttttggcttaggtgtaagttttttaatacttat
ttactgtatgtat
gaattcagtacagaagctgatgcagaggtgacctgctcctgcgtatttca
gagcccgccaacagcctggcttgagtatagatgcgtagccagttctcaga
accatgcctgaagttatgtgcacacagtggcagagaggggaaggtgccct
tgggacttgctcttttttccctgtgggttgtgctcctgcagtaggggtag
gactgcctgtgagggagagtggcagtccacacgagccagactgatgctaa
tgcatttgaattttttaaaatttatttttatgtgatgggtgttttttctg
catacatgtctatgtgtcacatgtccacagtgaccagaaggcagcattgg
atgccctacaactgtggttacagactgccttgtgggtgctggcactcaaa
tgctggtactctggaagagcaggtcgtgttcctaaccactgagcaatctc
accagtcctgaaaattttcatttttagtctaattgagttgagtttcatag
gtttgactgaaaactgcattatttatttgttcgtttagattttttgaggt
agggtctaggtatgtagccctggctgtcctggaactcactctgtagacca
ggctggcctcagaaatccgcctgcctctgcctcccgagtgctgggagtaa
aggcgtgcgccaccactacccagcgagattaaggtcttaattctaaaata
ccatgtcttggcttttgagaaatggactgtgtgttatctgggtcacactg
cttggcagatgaagaaagcaagttgtgaggctgatgtgggtgaggaggtg
ctgctctatctaactgctctgtgcattatggacgggctcttagttgacaa
cagactggggtgtgaagcagcagtcctggccggcgaggagaagtgtgtca
gttccactttaaattggtacttcttgggccagtttttttgtttttgtttt
aagtttcttatttgaatgtatgaaaggttttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_75556700_75557821
seq2: B6Ng01-139E07.b_50_1162 (reverse)

seq1  ATACATACAGTAAATAAGTATTAAAAAAAACTTACACTTAAAGCCAAAAA  50
      ||||||||||||||||||||||  ||||||||||||| | ||||| ||||
seq2  ATACATACAGTAAATAAGTATT--AAAAAACTTACACCT-AAGCC-AAAA  46

seq1  ATAAATAAAAGAGTTAAGTGAGGACAAATTACTGTATTTAGTCAGGTGTG  100
      |||||| || ||||| |||||||||||  ||||| |||||||||||||||
seq2  ATAAAT-AAGGAGTT-AGTGAGGACAA--TACTGGATTTAGTCAGGTGTG  92

seq1  TTGTACCACTTCACATTTGATGTTTGTGCAGTATTGTAAATACCAGTCCT  150
       |||| ||||||||| ||||||||   |||||| ||||||||||||||||
seq2  GTGTA-CACTTCACA-TTGATGTTGTGGCAGTA-TGTAAATACCAGTCCT  139

seq1  TTCCTTCCCCCTTCACTCCGTTCAAGACAAGGTCTCATGGA-GCAC-ACT  198
      |||| |||||||||| ||||||||||||||||||||||||| |||| |||
seq2  TTCC-TCCCCCTTCAATCCGTTCAAGACAAGGTCTCATGGAGGCACAACT  188

seq1  CAGGCTACCCTTGAACTTGCTTCATAACCTAGTCAGCCTTGAACTGCTGG  248
      |||||||||| || ||||||||||||||||||||||||||||||||||||
seq2  CAGGCTACCC-TGGACTTGCTTCATAACCTAGTCAGCCTTGAACTGCTGG  237

seq1  TCCTCTCACTG-AAGCTCTATTCTTAGTTTTTAATTTTATAATGTGGAAA  297
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCACTGAAAGCTCTATTCTTAGTTTTTAATTTTATAATGTGGAAA  287

seq1  TTGCTTTGGGGGCCTGGGGAGATAGATCAGTCTGTCAAGTGCTTGTCATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGGGGGCCTGGGGAGATAGATCAGTCTGTCAAGTGCTTGTCATA  337

seq1  CAATCACAGACACTGAGTTTAAATCCCAGCATCCAGTT-AAAAACTCAGT  396
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAATCACAGACACTGAGTTTAAATCCCAGCATCCAGTTAAAAAACTCAGT  387

seq1  TGTTGCTTGTCATTCCAGCATGTTTGTAATCCTCTCTTGGGAGGCAGGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTGTCATTCCAGCATGTTTGTAATCCTCTCTTGGGAGGCAGGGA  437

seq1  CTGATGAATCCCTGGGGCTCCCTAACCAGTTGTCATAGCCTAATTGTTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAATCCCTGGGGCTCCCTAACCAGTTGTCATAGCCTAATTGTTGA  487

seq1  ACCTTACCACTTAGAGAAGTTGTTTTAAAAACCCAAGGTGGAGCTGGGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACCACTTAGAGAAGTTGTTTTAAAAACCCAAGGTGGAGCTGGGTG  537

seq1  GTAGTGCATGCCTTTGGGAGGCAGAGTCAGGCAGATCTCTGAATTCAAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCATGCCTTTGGGAGGCAGAGTCAGGCAGATCTCTGAATTCAAGG  587

seq1  CTAACCTGGTCTACAGAGTAAGTTCCTGGATAGACAGGGCTACACAGAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTGGTCTACAGAGTAAGTTCCTGGATAGACAGGGCTACACAGAAA  637

seq1  AACTGTCTAGAAAAACAAAAAAAAATTAAAGATAATCAAACATTTTCCTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCTAGAAAAACAAAAAAAAATTAAAGATAATCAAACATTTTCCTT  687

seq1  TTTTGTGAATCTGTGTATGATGAATACTCTCACAATAATGATGGTGAACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGAATCTGTGTATGATGAATACTCTCACAATAATGATGGTGAACA  737

seq1  TAGGGAACTCAGGACAGCTTGTGGAAGGTCTTTCCTTCTTCCATGTGGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAACTCAGGACAGCTTGTGGAAGGTCTTTCCTTCTTCCATGTGGGT  787

seq1  TGTGGAAACTGAACTAGTAGGTTCAATTAATTAGCCCAGGTTGAAATTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAACTGAACTAGTAGGTTCAATTAATTAGCCCAGGTTGAAATTCT  837

seq1  TTCTTTCTTTTTTTGGACTTGCTAATTCTGATACCTCTGCCTCACTTGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTTTTTGGACTTGCTAATTCTGATACCTCTGCCTCACTTGTG  887

seq1  CTATTATGTTGGCTGAACTTAAAGCTTTATAAAAGCCGACCCAGGAGGTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATGTTGGCTGAACTTAAAGCTTTATAAAAGCCGACCCAGGAGGTG  937

seq1  GAGGCAAAGGGTCAGGAATCGGTGTCATCCTTGGCTGCATAGAAAATTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAAGGGTCAGGAATCGGTGTCATCCTTGGCTGCATAGAAAATTCT  987

seq1  AGGCTACCCAATCACCCAACTCAAAAATAAACAAATGGGCCGGGCAGTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACCCAATCACCCAACTCAAAAATAAACAAATGGGCCGGGCAGTGG  1037

seq1  AGGCACACACCTTTAATCCCAGCACTTGGAAGGCAGAGACAGGCGGATTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACACACCTTTAATCCCAGCACTTGGAAGGCAGAGACAGGCGGATTT  1087

seq1  CTCAGCCTGGTCTACATAGTGAATTC  1122
      ||||||||||||||||||||||||||
seq2  CTCAGCCTGGTCTACATAGTGAATTC  1113

seq1: chr11_75507190_75508172
seq2: B6Ng01-139E07.g_69_1051

seq1  GAATTCAGTACAGAAGCTGATGCAGAGGTGACCTGCTCCTGCGTATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACAGAAGCTGATGCAGAGGTGACCTGCTCCTGCGTATTTCA  50

seq1  GAGCCCGCCAACAGCCTGGCTTGAGTATAGATGCGTAGCCAGTTCTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCGCCAACAGCCTGGCTTGAGTATAGATGCGTAGCCAGTTCTCAGA  100

seq1  ACCATGCCTGAAGTTATGTGCACACAGTGGCAGAGAGGGGAAGGTGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCTGAAGTTATGTGCACACAGTGGCAGAGAGGGGAAGGTGCCCT  150

seq1  TGGGACTTGCTCTTTTTTCCCTGTGGGTTGTGCTCCTGCAGTAGGGGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTTGCTCTTTTTTCCCTGTGGGTTGTGCTCCTGCAGTAGGGGTAG  200

seq1  GACTGCCTGTGAGGGAGAGTGGCAGTCCACACGAGCCAGACTGATGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCTGTGAGGGAGAGTGGCAGTCCACACGAGCCAGACTGATGCTAA  250

seq1  TGCATTTGAATTTTTTAAAATTTATTTTTATGTGATGGGTGTTTTTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGAATTTTTTAAAATTTATTTTTATGTGATGGGTGTTTTTTCTG  300

seq1  CATACATGTCTATGTGTCACATGTCCACAGTGACCAGAAGGCAGCATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGTCTATGTGTCACATGTCCACAGTGACCAGAAGGCAGCATTGG  350

seq1  ATGCCCTACAACTGTGGTTACAGACTGCCTTGTGGGTGCTGGCACTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTACAACTGTGGTTACAGACTGCCTTGTGGGTGCTGGCACTCAAA  400

seq1  TGCTGGTACTCTGGAAGAGCAGGTCGTGTTCCTAACCACTGAGCAATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTACTCTGGAAGAGCAGGTCGTGTTCCTAACCACTGAGCAATCTC  450

seq1  ACCAGTCCTGAAAATTTTCATTTTTAGTCTAATTGAGTTGAGTTTCATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCCTGAAAATTTTCATTTTTAGTCTAATTGAGTTGAGTTTCATAG  500

seq1  GTTTGACTGAAAACTGCATTATTTATTTGTTCGTTTAGATTTTTTGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACTGAAAACTGCATTATTTATTTGTTCGTTTAGATTTTTTGAGGT  550

seq1  AGGGTCTAGGTATGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTAGGTATGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCA  600

seq1  GGCTGGCCTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGAGTAA  650

seq1  AGGCGTGCGCCACCACTACCCAGCGAGATTAA-GTCTTAATTCTAAAATA  699
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGCGTGCGCCACCACTACCCAGCGAGATTAAGGTCTTAATTCTAAAATA  700

seq1  CCATGTCTTGGC-TTTGAGAAATGGACTGTGTGTTATCTGGGTCACACTG  748
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTTGGCTTTTGAGAAATGGACTGTGTGTTATCTGGGTCACACTG  750

seq1  CTTGGCAGATGAAGAAAGCAAGTTGTGAGGCTGATGTGGGTGAGGAGGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAGATGAAGAAAGCAAGTTGTGAGGCTGATGTGGGTGAGGAGGTG  800

seq1  CTGCTCTATCTAACTGCTCTGTGCATTATGGACGGGCTCTTAG-TGACAA  847
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGCTCTATCTAACTGCTCTGTGCATTATGGACGGGCTCTTAGTTGACAA  850

seq1  CAGACTGGGGTGTGAGGCAGCAGTCCTGGCCGGCGAGGAG-AGTGTGTCA  896
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  CAGACTGGGGTGTGAAGCAGCAGTCCTGGCCGGCGAGGAGAAGTGTGTCA  900

seq1  GTTCCACTTTAAATTGGTACTTCTT-GGCCAGGTTTTTTGTTTTTGTTTT  945
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  GTTCCACTTTAAATTGGTACTTCTTGGGCCAGTTTTTTTGTTTTTGTTTT  950

seq1  TAAAGATTTCTTTTATTTGACATGTATG-AATGTTTTGC  983
        ||| ||||  |||||||| ||||||| || |||||||
seq2  --AAG-TTTC--TTATTTGA-ATGTATGAAAGGTTTTGC  983