BAC Information

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BAC

Clone NameB6Ng01-142E18
Chromosome11 (Build37)
Map Location 13,677,286 - 13,833,959
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC627244
Downstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142E18.bB6Ng01-142E18.g
ACCDH940528DH940529
length1,1011,186
definitionDH940528|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E18, 5' end.DH940529|Mus musculus domesticus DNA, BAC clone: B6Ng01-142E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,832,832 - 13,833,959)(13,677,286 - 13,678,490)
sequence
gaattctgcttattatgtactaagaggccatagtttcaatccctagtttt
accccaagcagaagcaagcaagtaagcaaacaaacaaacaagaacaccaa
aaacacaataaaaacgaaaggtgtaatgtacagctcagaggtgtgcccct
ataaatcagaaaaaattattatctaagatacatatagtcactgaaaatta
agactcaaaaaatcgaatttaaacagaagtgaacaggcattctgcataac
ttgtttttattacaatacatgaacaaaacccactcaaatactggtttaga
gccataaaaattgtaaaagaataaaaacataacattttagatgacagaga
ttttaaatcttatgaaagactgatgaaaacataaaaactctattaggaaa
acttcttttttttccccacaaggctcaaaccaccctatttatattttaca
acctgaaaaaaatttagcctgtaggcattcactttagatcaaggtttcac
aacaatggtaaataccattttgctgaaaaattctgatacagttactatat
attgttggatagttagtaatatatttgtcttttctcactagatgtgaata
acattctccaggggacaatctgaaacttttgcagagattatcaaatatca
agataaactttccacacagaaagtatcaaagttttataaatatttcaaag
tagtaaacatgacaccaagacaactttgttcctagcaatagcattactta
atacacttaaaacccaaaacaaaccaatcatctttatagattaaattaat
aatttcccaatataagaaaatgccaaatttaacaggctaaactataacta
cacttatcacattgttaatttttcagtaaatattattatctgaggaaagc
catagattatcttctaaattttgtaatatatatatatatatatatatgta
ccatacacacaatatatagtttcatgtatataattaatattaagtatgat
tatgtataatatcatagttgcagtatttcttattaaaaaacatagtctca
aaatcaatacttatatcaaatcatgaaaccacacagaagatgtctaaaat
t
gaattcaaccaagtaaagccagtattttcatgtatttcaatactccagtt
catgacctaatgaaagtttcccaatgtagagttgaaaagacttattttat
tggaaaataccttattctatattaatatttattccttattcgtacattgt
gtcatgtttaagtcctgaagtagtacatggcagcaaacagtatgtattgt
tcttttgcatatcttataattagtctgtttttagcagtaacagtactgta
tgattattacgagatacatttaagtgaagggcagatgtaggagaagtttg
ggttctgttttaagctcctcaatttcagagattatatttttcaagagcca
agtctgaaggtcaagagctcttctctgtgggctttctgtattttgcagaa
tatggggattccaaaaagaaaataaagccacattgtcatcatcagaaact
gtcagctatgaaaagaactctattttggaattcatcataaaataaatgag
ttttcatgaatgaataaacatccacttactcttcacattctaaggatact
gcaggaaggcacactgagcagttagttcacttctcaatgccattcataac
tgtttgtggagaggcacttatggatgggctgttcttaggcagacacctcc
tgttcctggcttggctgaagactccatcagtcaaaagtgctaactaaaaa
agagttgcataagtcttttgctcagtgcttctatcaaaccgcagagtgat
aaaagaaaaaatcctgtagctaaagactgctggctatgtgccccatgctt
atcattttatataagttaaatcaatggaaataagatgtagaccttgagca
tgactgagacgtatatgcttgttacaagttgcagctcacgttcccctgca
atacacttttcaatgctcatacactcagttgaacttaaatttcctctgag
aattttgctattttcagtaccttcagtctcctgtctctctgttgatatcc
actccagtctcccccttcattctgttcatatggctccgttcctttccact
cttatctccccctccccctctccaccttccatttttattcctaggcttct
aatcatttcttattgcttttttcggcccctcccaaaccatctgcttcaag
ttacatgtccaatcggtataaacgaagcctgaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_13832832_13833959
seq2: B6Ng01-142E18.b_49_1149 (reverse)

seq1  AATTTTAGGACATTTCTTCTTGTGTGTGTTTTCATGATTTGTATATAAGG  50
      ||||||| ||||     |||| |||||| |||||||||||| |||||| |
seq2  AATTTTA-GACA-----TCTTCTGTGTGGTTTCATGATTTG-ATATAA-G  42

seq1  TATTGATATTTGAAGAACTATGTTTTATAATAAGAAATACTGCATACTAT  100
      ||||||| |||||   |||||||||| ||||||||||||||||| |||| 
seq2  TATTGAT-TTTGA--GACTATGTTTTTTAATAAGAAATACTGCA-ACTA-  87

seq1  TGATATTATACCATTAAATCATACTTAAATATAAATTATATACATTGAAA  150
      |||||||||| |||  |||||||||| ||||| ||||||||||||   ||
seq2  TGATATTATA-CAT--AATCATACTT-AATATTAATTATATACAT--GAA  131

seq1  ACTATATATTGTGTGTATGGTACAATTAATTATATATATA-ATATATATA  199
      ||||||||||||||||||||||||      |||||||||| |||||||||
seq2  ACTATATATTGTGTGTATGGTACA------TATATATATATATATATATA  175

seq1  TTACAAAAATATAGAAGATAATCTATGGCTTTCCTCAGATAATAATATTT  249
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTAC-AAAATTTAGAAGATAATCTATGGCTTTCCTCAGATAATAATATTT  224

seq1  ACTGAAAAAATTAACAATGTGATAAGTGTAGTTATAGTTTAGCCTGTTAA  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTG-AAAAATTAACAATGTGATAAGTGTAGTTATAGTTTAGCCTGTTAA  273

seq1  ATTTTGGCATTTTCTTATATTGGGAAATTATTAATTTAATCTATAAAGAT  349
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTGGCATTTTCTTATATTGGGAAATTATTAATTTAATCTATAAAGAT  322

seq1  GATTGGTTTGTTTTGGGTTTTAAGTGTATTAAGTAATGCTATTGCTAGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTTTGTTTTGGGTTTTAAGTGTATTAAGTAATGCTATTGCTAGGA  372

seq1  ACAAAGTTGTCTTGGTGTCATGTTTACTACTTTGAAATATTTATAAAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTGTCTTGGTGTCATGTTTACTACTTTGAAATATTTATAAAACT  422

seq1  TTGATACTTTCTGTGTGGAAAGTTTATCTTGATATTTGATAATCTCTGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACTTTCTGTGTGGAAAGTTTATCTTGATATTTGATAATCTCTGCA  472

seq1  AAAGTTTCAGATTGTCCCCTGGAGAATGTTATTCACATCTAGTGAGAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCAGATTGTCCCCTGGAGAATGTTATTCACATCTAGTGAGAAAA  522

seq1  GACAAATATATTACTAACTATCCAACAATATATAGTAACTGTATCAGAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATATATTACTAACTATCCAACAATATATAGTAACTGTATCAGAAT  572

seq1  TTTTCAGCAAAATGGTATTTACCATTGTTGTGAAACCTTGATCTAAAGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGCAAAATGGTATTTACCATTGTTGTGAAACCTTGATCTAAAGTG  622

seq1  AATGCCTACAGGCTAAATTTTTTTCAGGTTGTAAAATATAAATAGGGTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTACAGGCTAAATTTTTTTCAGGTTGTAAAATATAAATAGGGTGG  672

seq1  TTTGAGCCTTGTGGGGAAAAAAAAGAAGTTTTCCTAATAGAGTTTTTATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCCTTGTGGGGAAAAAAAAGAAGTTTTCCTAATAGAGTTTTTATG  722

seq1  TTTTCATCAGTCTTTCATAAGATTTAAAATCTCTGTCATCTAAAATGTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCAGTCTTTCATAAGATTTAAAATCTCTGTCATCTAAAATGTTA  772

seq1  TGTTTTTATTCTTTTACAATTTTTATGGCTCTAAACCAGTATTTGAGTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATTCTTTTACAATTTTTATGGCTCTAAACCAGTATTTGAGTGG  822

seq1  GTTTTGTTCATGTATTGTAATAAAAACAAGTTATGCAGAATGCCTGTTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTCATGTATTGTAATAAAAACAAGTTATGCAGAATGCCTGTTCA  872

seq1  CTTCTGTTTAAATTCGATTTTTTGAGTCTTAATTTTCAGTGACTATATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTTAAATTCGATTTTTTGAGTCTTAATTTTCAGTGACTATATGT  922

seq1  ATCTTAGATAATAATTTTTTCTGATTTATAGGGGCACACCTCTGAGCTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGATAATAATTTTTTCTGATTTATAGGGGCACACCTCTGAGCTGT  972

seq1  ACATTACACCTTTCGTTTTTATTGTGTTTTTGGTGTTCTTGTTTGTTTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACACCTTTCGTTTTTATTGTGTTTTTGGTGTTCTTGTTTGTTTGT  1022

seq1  TTGCTTACTTGCTTGCTTCTGCTTGGGGTAAAACTAGGGATTGAAACTAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTACTTGCTTGCTTCTGCTTGGGGTAAAACTAGGGATTGAAACTAT  1072

seq1  GGCCTCTTAGTACATAATAAGCAGAATTC  1128
      |||||||||||||||||||||||||||||
seq2  GGCCTCTTAGTACATAATAAGCAGAATTC  1101

seq1: chr11_13677286_13678490
seq2: B6Ng01-142E18.g_68_1253

seq1  GAATTCAACCAAGTAAAGCCAGTATTTTCATGTATTTCAATACTCCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCAAGTAAAGCCAGTATTTTCATGTATTTCAATACTCCAGTT  50

seq1  CATGACCTAATGAAAGTTTCCCAATGTAGAGTTGAAAAGACTTATTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTAATGAAAGTTTCCCAATGTAGAGTTGAAAAGACTTATTTTAT  100

seq1  TGGAAAATACCTTATTCTATATTAATATTTATTCCTTATTCGTACATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATACCTTATTCTATATTAATATTTATTCCTTATTCGTACATTGT  150

seq1  GTCATGTTTAAGTCCTGAAGTAGTACATGGCAGCAAACAGTATGTATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTTTAAGTCCTGAAGTAGTACATGGCAGCAAACAGTATGTATTGT  200

seq1  TCTTTTGCATATCTTATAATTAGTCTGTTTTTAGCAGTAACAGTACTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCATATCTTATAATTAGTCTGTTTTTAGCAGTAACAGTACTGTA  250

seq1  TGATTATTACGAGATACATTTAAGTGAAGGGCAGATGTAGGAGAAGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTACGAGATACATTTAAGTGAAGGGCAGATGTAGGAGAAGTTTG  300

seq1  GGTTCTGTTTTAAGCTCCTCAATTTCAGAGATTATATTTTTCAAGAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTTTTAAGCTCCTCAATTTCAGAGATTATATTTTTCAAGAGCCA  350

seq1  AGTCTGAAGGTCAAGAGCTCTTCTCTGTGGGCTTTCTGTATTTTGCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAAGGTCAAGAGCTCTTCTCTGTGGGCTTTCTGTATTTTGCAGAA  400

seq1  TATGGGGATTCCAAAAAGAAAATAAAGCCACATTGTCATCATCAGAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGATTCCAAAAAGAAAATAAAGCCACATTGTCATCATCAGAAACT  450

seq1  GTCAGCTATGAAAAGAACTCTATTTTGGAATTCATCATAAAATAAATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTATGAAAAGAACTCTATTTTGGAATTCATCATAAAATAAATGAG  500

seq1  TTTTCATGAATGAATAAACATCCACTTACTCTTCACATTCTAAGGATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGAATGAATAAACATCCACTTACTCTTCACATTCTAAGGATACT  550

seq1  GCAGGAAGGCACACTGAGCAGTTAGTTCACTTCTCAATGCCATTCATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGGCACACTGAGCAGTTAGTTCACTTCTCAATGCCATTCATAAC  600

seq1  TGTTTGTGGAGAGGCACTTATGGATGGGCTGTTCTTAGGCAGACACCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGGAGAGGCACTTATGGATGGGCTGTTCTTAGGCAGACACCTCC  650

seq1  TGTTCCTGGCTTGGCTGAAGACTCCATCAGTCAAAAGTGCTAACTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGGCTTGGCTGAAGACTCCATCAGTCAAAAGTGCTAACTAAAAA  700

seq1  AGAGTTGCATAAGTCTTTTGCTCAGTGCTTCTATCAAACCGCAGAGTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGCATAAGTCTTTTGCTCAGTGCTTCTATCAAACCGCAGAGTGAT  750

seq1  AAAAGAAAAAATCCTGTAGCTAAAGACTGCTGGCTATGTGCCCCATGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAATCCTGTAGCTAAAGACTGCTGGCTATGTGCCCCATGCTT  800

seq1  ATCATTTTATATAAGTTAAATCAATGGGAAATAAGATGTAGACCTTGAGC  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATCATTTTATATAAGTTAAATCAAT-GGAAATAAGATGTAGACCTTGAGC  849

seq1  ATGACTGAGACGTATATGCTTGTTACAAGTTGCAGCTCACGTTCCCCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGAGACGTATATGCTTGTTACAAGTTGCAGCTCACGTTCCCCTGC  899

seq1  AATACACTTTTCAATGCTCATACACTCAAGTTGAACTTAAATTT-CTCTG  949
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  AATACACTTTTCAATGCTCATACACTC-AGTTGAACTTAAATTTCCTCTG  948

seq1  AGATTTTTGCTATTTTCAGTTACCTTCAGTCTCCTGTCTCCTCTGTTGAT  999
      ||| ||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  AGAATTTTGCTATTTTCAG-TACCTTCAGTCTCCTGTCT-CTCTGTTGAT  996

seq1  TATCACTCCAGTCT-CCTCTCTATTCTGTTCATTATTGCTCCGGTTCCTT  1048
         ||||||||||| || ||  |||||||||| ||| ||||| |||||||
seq2  ATCCACTCCAGTCTCCCCCTTCATTCTGTTCA-TATGGCTCC-GTTCCTT  1044

seq1  TTCA-TCTTATCTCCTCCTCCTCCTTCTCCACCTTCCTTTTTTATTCTTA  1097
      | || |||||||||| ||||| || |||||||||||| ||||||||| ||
seq2  TCCACTCTTATCTCCCCCTCC-CCCTCTCCACCTTCCATTTTTATTCCTA  1093

seq1  GTCTTCTTACTCTATTTCTTTATTTGCTTTTTTCTGCCCCTCCCCAAACC  1147
      | |||| || || |||||||   ||||||||||| |||||| ||||||||
seq2  GGCTTC-TAATC-ATTTCTT--ATTGCTTTTTTCGGCCCCT-CCCAAACC  1138

seq1  ATTCTGCTTCTCAATGTTCATTGTCCCCAATCAGTTAATAAAAGCAGAGC  1197
      | ||||||||   | |||   |||  |||||| ||  |||||  |  |||
seq2  A-TCTGCTTC---AAGTTACATGT--CCAATCGGT--ATAAA--CGAAGC  1178

seq1  CTGAATGG  1205
      ||||||||
seq2  CTGAATGG  1186