BAC Information

Click to search

BAC

Clone NameB6Ng01-142H14
Chromosome11 (Build37)
Map Location 13,831,577 - 14,010,068
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC627244
Downstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673, LOC432537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142H14.bB6Ng01-142H14.g
ACCDH940664DH940665
length1,1441,103
definitionDH940664|Mus musculus domesticus DNA, BAC clone: B6Ng01-142H14, 5' end.DH940665|Mus musculus domesticus DNA, BAC clone: B6Ng01-142H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,008,906 - 14,010,068)(13,831,577 - 13,832,702)
sequence
gaattcttaattgttccattgttgttctgttatcttctccacagtcttgt
tctattttataattaaacatcaaaagcagaactgtcatggtacatgaact
gtaaaaaacactcagaagttcatttgtgttaattccccttaaaacttaaa
ttaacgaatgtgacataagtaagaaggtagcattataaggatctcatctc
cagctgagggccactttttattattggcatttagggccagctttgttctg
aagtcagttgctaatcgctcttccaaaggaagctgacctgaaatgggcaa
gcttctgatgaggtttagagaaagccaattagggtcctaccttcctggct
tgatttcagcttcaataaattaatacaatttaatccacaataacttttcc
tttcagtttctaagaggacagataattagggctggaacttgccctgtctg
aactgtgatattggtcaagatagtattatgttacattgtttatggagaat
gtggtcaattgtagcttaatgaaatttacttttgcaagaacttctaggat
aaagatgtgaacacttgtgttgtcaaaggacacactacaattgatttaac
tgttgttttaaaaacaaaatcctcaaagttctatttacctaatgaagact
ccagagcctgtcaccgtgatgctggaggaacactcagttgacttttctac
tcccctgatgtcccccaaagaaaaaaagatttttctccttgtccacactg
ttttagatacccttcaacttaaagatgctcctgtctttttctgggttttc
ttgtgtttgctccctatcagttggttgcttgctctgcctcttaacctatt
gttgactttatttaactcttgtttctggacaactcctgggttaaaggtgt
gtgctagggatgagccacactgtagtaaggtttttgcagttcacaatctt
ggagttcacaatgtgatctatatgctgcaacatttagcttcagattattc
ataactatgggccagtgcagctcactttataaaaccaaaacaggatctct
catgaggcagcgtcagtgagcctggagtaagaaactactctcttgtgata
ccaaggcagacagatcccacgctgacatgacttctgacggtcag
gaattccttctcagaaaataactatatttgattaaaatatataatctaag
aaagcttgatttgggaaaaagtactttagaagtgaatggatccctgaaaa
tttaggacaacttatttcatctctcagaagtcagtgagaaaatatttgga
gatgaaccgaggcatctttagtgtctgattaagtgaggaacaagggtctt
ctcacatgaacagtgcttcataactgtgactcgtgctgtctggtaatgaa
gcagaaagacttgggttcaatggcagtctgggttgctgtgacattacagg
ctgaattgtggctttttagagatcagaaatagcatctaggaaggacttgc
ttcagtcccaacatgaaaatccctgaaaaagcaacaacaaaaatatagta
aaggtacactgccaaaaaagaaagaaaaaaagtcagaagtcacatacaca
gagtttctctaattcctagagaaaacttagtcactttcttttttagaata
gacaatgttactttaactgtttttctatgtaaaattatataaattcagtc
tatatcagtgatttaatcagtgaaatatgcattcatatcttttagtatta
atagcattagtagctaattttattaatctcatgtatataaaattatataa
cccagataagtgtgtaatatcaaaggatttttctccatcaaaaattttaa
aaattaaaatactttttccctaaattactatatcatagatatgatgcact
ttaaattcaataatattgtgaccttcaccaactgcctcagatagcatttg
tataacagattattctctcatcacaaatgctgatcatctatgtattttgc
tttgtgtatggcatgaaaactcatagtggaagattgtgtttgcttcagat
cttaaatagtttgtgtgaatgattaagttctatggatatacgtgaggtgt
ttgtttttttgttttttagttttagacacagaagagattatttaaccaat
gatgacagttcttgttagacagccgtttctctacatctgcctctcttatc
tgttgtcttcagtttagaataaggtttgtctttggcatgatgcaatgctc
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_14008906_14010068
seq2: B6Ng01-142H14.b_45_1188 (reverse)

seq1  CTGACCGTTTCAGGAAGATTCATGTCAGCGTGGGATCTGTCCTGTGCCTG  50
      |||||||  ||| ||||  ||||||||||||||||||||||   ||||| 
seq2  CTGACCG--TCA-GAAG--TCATGTCAGCGTGGGATCTGTC---TGCCTT  42

seq1  GGTAATTCACAAAGAGAGTTAAGTTTCTTTACT-CAGGCTCACTGTACCG  99
      ||||  |||| ||||||||  |||||| ||||| |||||||||||   ||
seq2  GGTA--TCAC-AAGAGAGT--AGTTTC-TTACTCCAGGCTCACTG--ACG  84

seq1  CTGCCTCATGAGAGATCCTGTTTT-GTTTTATAGAGTGGAGGCTGCCACT  148
      |||||||||||||||||||||||| |||||||| ||||   |||| ||||
seq2  CTGCCTCATGAGAGATCCTGTTTTGGTTTTATAAAGTG--AGCTG-CACT  131

seq1  GGCCCATAGGTTATGAATAATCTGAAGCTAAATGTTGCAGCATAATAGAT  198
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  GGCCCATA-GTTATGAATAATCTGAAGCTAAATGTTGCAGCAT-ATAGAT  179

seq1  CACATTGTGAACTCCAAGATTGTGAACTGCAAAAACCTTACTACAGTGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGTGAACTCCAAGATTGTGAACTGCAAAAACCTTACTACAGTGTG  229

seq1  GCTCATCCCTAGCACACACCTTTAACCCAGGAGTTGTCCAGAAACAAGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCCCTAGCACACACCTTTAACCCAGGAGTTGTCCAGAAACAAGAG  279

seq1  TTAAATAAAGTCAACAATAGGTTAAGAGGCAGAGCAAGCAACCAACTGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAAGTCAACAATAGGTTAAGAGGCAGAGCAAGCAACCAACTGAT  329

seq1  AGGGAGCAAACACAAGAAAACCCAGAAAAAGACAGGAGCATCTTTAAGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCAAACACAAGAAAACCCAGAAAAAGACAGGAGCATCTTTAAGTT  379

seq1  GAAGGGTATCTAAAACAGTGTGGACAAGGAGAAAAATCTTTTTTTCTTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTATCTAAAACAGTGTGGACAAGGAGAAAAATCTTTTTTTCTTTG  429

seq1  GGGGACATCAGGGGAGTAGAAAAGTCAACTGAGTGTTCCTCCAGCATCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACATCAGGGGAGTAGAAAAGTCAACTGAGTGTTCCTCCAGCATCAC  479

seq1  GGTGACAGGCTCTGGAGTCTTCATTAGGTAAATAGAACTTTGAGGATTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGGCTCTGGAGTCTTCATTAGGTAAATAGAACTTTGAGGATTTT  529

seq1  GTTTTTAAAACAACAGTTAAATCAATTGTAGTGTGTCCTTTGACAACACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAAAACAACAGTTAAATCAATTGTAGTGTGTCCTTTGACAACACA  579

seq1  AGTGTTCACATCTTTATCCTAGAAGTTCTTGCAAAAGTAAATTTCATTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCACATCTTTATCCTAGAAGTTCTTGCAAAAGTAAATTTCATTAA  629

seq1  GCTACAATTGACCACATTCTCCATAAACAATGTAACATAATACTATCTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAATTGACCACATTCTCCATAAACAATGTAACATAATACTATCTTG  679

seq1  ACCAATATCACAGTTCAGACAGGGCAAGTTCCAGCCCTAATTATCTGTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATATCACAGTTCAGACAGGGCAAGTTCCAGCCCTAATTATCTGTCC  729

seq1  TCTTAGAAACTGAAAGGAAAAGTTATTGTGGATTAAATTGTATTAATTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAAACTGAAAGGAAAAGTTATTGTGGATTAAATTGTATTAATTTA  779

seq1  TTGAAGCTGAAATCAAGCCAGGAAGGTAGGACCCTAATTGGCTTTCTCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCTGAAATCAAGCCAGGAAGGTAGGACCCTAATTGGCTTTCTCTA  829

seq1  AACCTCATCAGAAGCTTGCCCATTTCAGGTCAGCTTCCTTTGGAAGAGCG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCATCAGAAGCTTGCCCATTTCAGGTCAGCTTCCTTTGGAAGAGCG  879

seq1  ATTAGCAACTGACTTCAGAACAAAGCTGGCCCTAAATGCCAATAATAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAACTGACTTCAGAACAAAGCTGGCCCTAAATGCCAATAATAAAA  929

seq1  AGTGGCCCTCAGCTGGAGATGAGATCCTTATAATGCTACCTTCTTACTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCCTCAGCTGGAGATGAGATCCTTATAATGCTACCTTCTTACTTA  979

seq1  TGTCACATTCGTTAATTTAAGTTTTAAGGGGAATTAACACAAATGAACTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATTCGTTAATTTAAGTTTTAAGGGGAATTAACACAAATGAACTT  1029

seq1  CTGAGTGTTTTTTACAGTTCATGTACCATGACAGTTCTGCTTTTGATGTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTTTTTTACAGTTCATGTACCATGACAGTTCTGCTTTTGATGTT  1079

seq1  TAATTATAAAATAGAACAAGACTGTGGAGAAGATAACAGAACAACAATGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATAAAATAGAACAAGACTGTGGAGAAGATAACAGAACAACAATGG  1129

seq1  AACAATTAAGAATTC  1163
      |||||||||||||||
seq2  AACAATTAAGAATTC  1144

seq1: chr11_13831577_13832702
seq2: B6Ng01-142H14.g_68_1170

seq1  GAATTCCTTCTCAGAAAATAACTATATTTGATTAAAATATATAATCTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTCAGAAAATAACTATATTTGATTAAAATATATAATCTAAG  50

seq1  AAAGCTTGATTTGGGAAAAAGTACTTTAGAAGTGAATGGATCCCTGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGATTTGGGAAAAAGTACTTTAGAAGTGAATGGATCCCTGAAAA  100

seq1  TTTAGGACAACTTATTTCATCTCTCAGAAGTCAGTGAGAAAATATTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGACAACTTATTTCATCTCTCAGAAGTCAGTGAGAAAATATTTGGA  150

seq1  GATGAACCGAGGCATCTTTAGTGTCTGATTAAGTGAGGAACAAGGGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACCGAGGCATCTTTAGTGTCTGATTAAGTGAGGAACAAGGGTCTT  200

seq1  CTCACATGAACAGTGCTTCATAACTGTGACTCGTGCTGTCTGGTAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGAACAGTGCTTCATAACTGTGACTCGTGCTGTCTGGTAATGAA  250

seq1  GCAGAAAGACTTGGGTTCAATGGCAGTCTGGGTTGCTGTGACATTACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGACTTGGGTTCAATGGCAGTCTGGGTTGCTGTGACATTACAGG  300

seq1  CTGAATTGTGGCTTTTTAGAGATCAGAAATAGCATCTAGGAAGGACTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGTGGCTTTTTAGAGATCAGAAATAGCATCTAGGAAGGACTTGC  350

seq1  TTCAGTCCCAACATGAAAATCCCTGAAAAAGCAACAACAAAAATATAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCCAACATGAAAATCCCTGAAAAAGCAACAACAAAAATATAGTA  400

seq1  AAGGTACACTGCCAAAAAAGAAAGAAAAAAAGTCAGAAGTCACATACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACACTGCCAAAAAAGAAAGAAAAAAAGTCAGAAGTCACATACACA  450

seq1  GAGTTTCTCTAATTCCTAGAGAAAACTTAGTCACTTTCTTTTTTAGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTCTAATTCCTAGAGAAAACTTAGTCACTTTCTTTTTTAGAATA  500

seq1  GACAATGTTACTTTAACTGTTTTTCTATGTAAAATTATATAAATTCAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGTTACTTTAACTGTTTTTCTATGTAAAATTATATAAATTCAGTC  550

seq1  TATATCAGTGATTTAATCAGTGAAATATGCATTCATATCTTTTAGTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAGTGATTTAATCAGTGAAATATGCATTCATATCTTTTAGTATTA  600

seq1  ATAGCATTAGTAGCTAATTTTATTAATCTCATGTATATAAAATTATATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATTAGTAGCTAATTTTATTAATCTCATGTATATAAAATTATATAA  650

seq1  CCCAGATAAGTGTGTAATATCAAAGGATTTTTCTCCATCAAAAATTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATAAGTGTGTAATATCAAAGGATTTTTCTCCATCAAAAATTTTAA  700

seq1  AAATTAAAATACTTTTTCCCTAAATTACTATATCATAGATATGATGCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAATACTTTTTCCCTAAATTACTATATCATAGATATGATGCACT  750

seq1  TTAAATTCAATAATATTGTGACCTTCACCAACTGCCTCAGATAGCATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTCAATAATATTGTGACCTTCACCAACTGCCTCAGATAGCATTTG  800

seq1  TATAACAGATTATTCTCTCATCACAAATGCTGATCATCTATGTATTTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGATTATTCTCTCATCACAAATGCTGATCATCTATGTATTTTGC  850

seq1  TTTGTGTATGGCATGAAAACTCATAGTGGAAGATTGTGTTTGCTTCAAGA  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTGTGTATGGCATGAAAACTCATAGTGGAAGATTGTGTTTGCTTC-AGA  899

seq1  TCTTAAATAGTTTGTTGTGGATTGATTAAGTTCTATGGATATACGTTGAG  950
      |||||||||||||| ||| || ||||||||||||||||||||||| ||||
seq2  TCTTAAATAGTTTG-TGT-GAATGATTAAGTTCTATGGATATACG-TGAG  946

seq1  GTGTTTTGTTTTTTTTGTTTTTTTATGTTTTTTAGACACAGAAGAGAATT  1000
      ||||||   ||||||||||||||      ||||||||||||||||| |||
seq2  GTGTTT--GTTTTTTTGTTTTTT----AGTTTTAGACACAGAAGAG-ATT  989

seq1  ATTTTAAACCAATGGTTGACAGTTCCTTTGTTAGACAGGCCGTTTCTCTA  1050
      ||||  ||||||| | |||||||||  |||||||||| ||||||||||||
seq2  ATTT--AACCAAT-GATGACAGTTC--TTGTTAGACA-GCCGTTTCTCTA  1033

seq1  CATCCTTGCCTCTC-TATCTGTTTGTCTTCCAGTTTAGAATTAGTGTTTG  1099
      ||||  |||||||| |||||| ||||||| ||||||||||| || |||||
seq2  CATC--TGCCTCTCTTATCTG-TTGTCTT-CAGTTTAGAATAAG-GTTTG  1078

seq1  TCCTTTGGCATAGATGCAATGCTCGAA  1126
      | ||||||||| |||||||||||||||
seq2  T-CTTTGGCAT-GATGCAATGCTCGAA  1103