BAC Information

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BAC

Clone NameB6Ng01-144D23
Chromosome11 (Build37)
Map Location 29,239,785 - 29,356,952
singlet/doubletdoublet
Overlap geneLOC672637, LOC100042985, A430106J12Rik
Upstream geneEG626571, Ccdc85a, Efemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104
Downstream gene2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144D23.bB6Ng01-144D23.g
ACCDH941975DH941976
length1,1441,133
definitionDH941975|Mus musculus domesticus DNA, BAC clone: B6Ng01-144D23, 5' end.DH941976|Mus musculus domesticus DNA, BAC clone: B6Ng01-144D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,355,785 - 29,356,952)(29,239,785 - 29,240,928)
sequence
gaattcacaaaactgaagttttactttagactatttgtatatttctaaaa
agctaaacatagtcttatgtataatttttatgttacacactaaatgaagc
tataatagaattatttgatacaactttaaacagaaaagggccgggattca
ggtttttaaaaaacccttcttcctgaacaagtaaaattgagttttaagtt
ataaaaaagtaaaacaagacattactttgtgagataataattttggagac
aactgtttctcttgtgggatcttagctagggaaaataaagaaatataaat
aatcttaatttatttattaatctacttaaaggaaacaaaattgagactac
cttcagcaagttcactagttctggatatctgttccagctcccagccaagg
tgtaatgactcatccatactttgtttctgtgccatttccagagtcatatt
ttcttccattaattcttcaatcttctttctatccatatctcgttcctttt
caattatacagaatagggaaagaaagctaagaaatcatgtaatttccatc
cattattcatttatttttactaattttaaagtgaaagctttttagctcct
taaaattttctcactgaaggcaatacttagttattgtagtcaccagtgat
caatattgatatccttttaaaacctgatatgatatccttttaaaatgatc
tttttaaaaacttagttctttgagaatttctacaacatgttctggctgtt
ttcactcctctttttttttttttttggtttttcgagacagggtttctctg
tgtatccctggctgtcctagaactcactttgtagaccaggctggcctcta
actcagaaatctgcctgcctcccgagtgctgggattaaaggtgtgtgcca
ccacgcctggctttactcctcttttaccttctcctaaatcccttccttct
taccactggcctaagactgtgtctttttctttctttttaaaaactatcaa
gttcaattggcacatacattcttggatataaataatctttaggacaaaat
ggaaatgttctcaactacattcagtcattaacaaaatagaatgcactgat
aagtttatgagaatacctataaatttgcatttaaagactgcttg
gaattcccaacagatgttagcaaaccaggcctgatgccctgaggctttat
atcagaagcaagagaaagactagacagcatccaacaccatgggtgtgcac
agaaataggaaggatcttgtactttctctagtccatgctcctgcctccat
ctcagagcagcaagtactagctccctcctccccagaaaacatttctcact
ggatattgcatacctgatgatcttaatcgtcttccctacctgcagacttc
atcaacccaattgtctgtacacaatccaagctttacatccacaaacatcc
gtaaagagttatttgagactatttcacccatgactacaccaatgtgcttg
gttgtggtttgtaccccaatgtctcatgtgatggagacttgttttttcat
catgaaaggtggtgagatctcccagagtaggtctcatggatggtggtacc
actgtcatttgaaaggattaatagaattttctcagaacctggttagttct
cagagctctggcttccctctcagagttcccatttctaccctgcatgatta
catcctttatcaaagaaagactttaccaaagccaataccagtgtcatatt
tatccattcagagtagtgagctgaacatgcctttacttataaagttccca
ccctcatgaattttggtatagcaacaaagaacagacaagacaatggtcac
acaagatcaccctactcttattatctacattctcaatccttccctgggtt
ctgtggacttgaaggccttcagtagtcactgataacacttgtaagtaaag
agatgatctggagcaagacctttttaaacatttcacttccacttgcccaa
cacttcatactcagatctacctgtgacatgtatgctttgatatgtgaatt
caatgaacacatttctgagtaggttttgagcagctgcctgtgaggatggt
tattctctctttgtagtgacatggtctataactacttcaaatgtgactag
tatgagcagttgtttgttataggaattttgtgtatcgtctaaatggggat
tattttcatgtaatattactatatttcctccccacccaggattttcttta
tgaagaaacaatttaaatggcgatgaaatgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_29355785_29356952
seq2: B6Ng01-144D23.b_42_1185 (reverse)

seq1  CAAGCATGTCTTTTAAAATGCAAAAATATTATAGCTA-TCTCATAAAATT  49
      |||||| ||||||  |||||||||    |||||| || |||||| ||| |
seq2  CAAGCA-GTCTTT--AAATGCAAA---TTTATAGGTATTCTCAT-AAACT  43

seq1  TATCAGTGGCCATTACTATTTTGTTAAATGACTGAAATTGTTAGTATGAA  99
      ||||||||  |||| |||||||||| ||||||||||  || |||| ||| 
seq2  TATCAGTG--CATT-CTATTTTGTT-AATGACTGAA--TG-TAGT-TGA-  84

seq1  GGAACATTTTCATTTTTGTCCCTAAAGATTATTTATATCCAAGAATGTAT  149
       |||||||| || |||||| ||||||||||||||||||||||||||||||
seq2  -GAACATTTCCA-TTTTGT-CCTAAAGATTATTTATATCCAAGAATGTAT  131

seq1  GTGCAAATTGAACTTGATAGGTTTTTTAAAAAAGAAAAGAAAAAGGACAC  199
      |||| |||||||||||||||  ||||||||||   ||||||||| |||||
seq2  GTGCCAATTGAACTTGATAG--TTTTTAAAAA--GAAAGAAAAA-GACAC  176

seq1  AGTCTTAGGCCAGTGGGTAAGAAGGAAGGGATTTAGGAGAAGGTAAAAGA  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTCTTAGGCCAGT-GGTAAGAAGGAAGGGATTTAGGAGAAGGTAAAAGA  225

seq1  GGAGTAAAGCCAGGCGTGGTGGCACACACCTTTAATCCCAGCACTCGGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAAAGCCAGGCGTGGTGGCACACACCTTTAATCCCAGCACTCGGGA  275

seq1  GGCAGGCAGATTTCTGAGTTAGAGGCCAGCCTGGTCTACAAAGTGAGTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCAGATTTCTGAGTTAGAGGCCAGCCTGGTCTACAAAGTGAGTTC  325

seq1  TAGGACAGCCAGGGATACACAGAGAAACCCTGTCTCGAAAAACCAAAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGCCAGGGATACACAGAGAAACCCTGTCTCGAAAAACCAAAAAA  375

seq1  AAAAAAAAAGAGGAGTGAAAACAGCCAGAACATGTTGTAGAAATTCTCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGAGGAGTGAAAACAGCCAGAACATGTTGTAGAAATTCTCAA  425

seq1  AGAACTAAGTTTTTAAAAAGATCATTTTAAAAGGATATCATATCAGGTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAAGTTTTTAAAAAGATCATTTTAAAAGGATATCATATCAGGTTT  475

seq1  TAAAAGGATATCAATATTGATCACTGGTGACTACAATAACTAAGTATTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGATATCAATATTGATCACTGGTGACTACAATAACTAAGTATTGC  525

seq1  CTTCAGTGAGAAAATTTTAAGGAGCTAAAAAGCTTTCACTTTAAAATTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTGAGAAAATTTTAAGGAGCTAAAAAGCTTTCACTTTAAAATTAG  575

seq1  TAAAAATAAATGAATAATGGATGGAAATTACATGATTTCTTAGCTTTCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAATGAATAATGGATGGAAATTACATGATTTCTTAGCTTTCTT  625

seq1  TCCCTATTCTGTATAATTGAAAAGGAACGAGATATGGATAGAAAGAAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATTCTGTATAATTGAAAAGGAACGAGATATGGATAGAAAGAAGAT  675

seq1  TGAAGAATTAATGGAAGAAAATATGACTCTGGAAATGGCACAGAAACAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATTAATGGAAGAAAATATGACTCTGGAAATGGCACAGAAACAAA  725

seq1  GTATGGATGAGTCATTACACCTTGGCTGGGAGCTGGAACAGATATCCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGATGAGTCATTACACCTTGGCTGGGAGCTGGAACAGATATCCAGA  775

seq1  ACTAGTGAACTTGCTGAAGGTAGTCTCAATTTTGTTTCCTTTAAGTAGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGAACTTGCTGAAGGTAGTCTCAATTTTGTTTCCTTTAAGTAGAT  825

seq1  TAATAAATAAATTAAGATTATTTATATTTCTTTATTTTCCCTAGCTAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATAAATTAAGATTATTTATATTTCTTTATTTTCCCTAGCTAAGA  875

seq1  TCCCACAAGAGAAACAGTTGTCTCCAAAATTATTATCTCACAAAGTAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAAGAGAAACAGTTGTCTCCAAAATTATTATCTCACAAAGTAATG  925

seq1  TCTTGTTTTACTTTTTTATAACTTAAAACTCAATTTTACTTGTTCAGGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTTACTTTTTTATAACTTAAAACTCAATTTTACTTGTTCAGGAA  975

seq1  GAAGGGTTTTTTAAAAACCTGAATCCCGGCCCTTTTCTGTTTAAAGTTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTTTTTTAAAAACCTGAATCCCGGCCCTTTTCTGTTTAAAGTTGT  1025

seq1  ATCAAATAATTCTATTATAGCTTCATTTAGTGTGTAACATAAAAATTATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAATTCTATTATAGCTTCATTTAGTGTGTAACATAAAAATTATA  1075

seq1  CATAAGACTATGTTTAGCTTTTTAGAAATATACAAATAGTCTAAAGTAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGACTATGTTTAGCTTTTTAGAAATATACAAATAGTCTAAAGTAAA  1125

seq1  ACTTCAGTTTTGTGAATTC  1168
      |||||||||||||||||||
seq2  ACTTCAGTTTTGTGAATTC  1144

seq1: chr11_29239785_29240928
seq2: B6Ng01-144D23.g_67_1199

seq1  GAATTCCCAACAGATGTTAGCAAACCAGGCCTGATGCCCTGAGGCTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAACAGATGTTAGCAAACCAGGCCTGATGCCCTGAGGCTTTAT  50

seq1  ATCAGAAGCAAGAGAAAGACTAGACAGCATCCAACACCATGGGTGTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAGCAAGAGAAAGACTAGACAGCATCCAACACCATGGGTGTGCAC  100

seq1  AGAAATAGGAAGGATCTTGTACTTTCTCTAGTCCATGCTCCTGCCTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGGAAGGATCTTGTACTTTCTCTAGTCCATGCTCCTGCCTCCAT  150

seq1  CTCAGAGCAGCAAGTACTAGCTCCCTCCTCCCCAGAAAACATTTCTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGCAGCAAGTACTAGCTCCCTCCTCCCCAGAAAACATTTCTCACT  200

seq1  GGATATTGCATACCTGATGATCTTAATCGTCTTCCCTACCTGCAGACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTGCATACCTGATGATCTTAATCGTCTTCCCTACCTGCAGACTTC  250

seq1  ATCAACCCAATTGTCTGTACACAATCCAAGCTTTACATCCACAAACATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCCAATTGTCTGTACACAATCCAAGCTTTACATCCACAAACATCC  300

seq1  GTAAAGAGTTATTTGAGACTATTTCACCCATGACTACACCAATGTGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAGTTATTTGAGACTATTTCACCCATGACTACACCAATGTGCTTG  350

seq1  GTTGTGGTTTGTACCCCAATGTCTCATGTGATGGAGACTTGTTTTTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTTTGTACCCCAATGTCTCATGTGATGGAGACTTGTTTTTTCAT  400

seq1  CATGAAAGGTGGTGAGATCTCCCAGAGTAGGTCTCATGGATGGTGGTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGGTGGTGAGATCTCCCAGAGTAGGTCTCATGGATGGTGGTACC  450

seq1  ACTGTCATTTGAAAGGATTAATAGAATTTTCTCAGAACCTGGTTAGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATTTGAAAGGATTAATAGAATTTTCTCAGAACCTGGTTAGTTCT  500

seq1  CAGAGCTCTGGCTTCCCTCTCAGAGTTCCCATTTCTACCCTGCATGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCTGGCTTCCCTCTCAGAGTTCCCATTTCTACCCTGCATGATTA  550

seq1  CATCCTTTATCAAAGAAAGACTTTACCAAAGCCAATACCAGTGTCATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTATCAAAGAAAGACTTTACCAAAGCCAATACCAGTGTCATATT  600

seq1  TATCCATTCAGAGTAGTGAGCTGAACATGCCTTTACTTATAAAGTTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATTCAGAGTAGTGAGCTGAACATGCCTTTACTTATAAAGTTCCCA  650

seq1  CCCTCATGAATTTTGGTATAGCAACAAAGAACAGACAAGACAATGGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATGAATTTTGGTATAGCAACAAAGAACAGACAAGACAATGGTCAC  700

seq1  ACAAGATCACCCTACTCTTATTATCTACATTCTCAATCCTTCCCTGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATCACCCTACTCTTATTATCTACATTCTCAATCCTTCCCTGGGTT  750

seq1  CTGTGGACTTGAAGGCCTTCAGTAGTCACTGATAACACTTGTAAGTAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGACTTGAAGGCCTTCAGTAGTCACTGATAACACTTGTAAGTAAAG  800

seq1  AGATGATCTGGAGCAAGACCTTTTTAAACATTTCACTTCCACTTGCCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATCTGGAGCAAGACCTTTTTAAACATTTCACTTCCACTTGCCCAA  850

seq1  CACTTCATACTCAGATCTACCTGTGACATGTATGCTTTGATATGTGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCATACTCAGATCTACCTGTGACATGTATGCTTTGATATGTGAATT  900

seq1  CAATGAACACATTTCTGAGTAGGTTTTGAGCAGCTGCCTGTGAGGATTGG  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAATGAACACATTTCTGAGTAGGTTTTGAGCAGCTGCCTGTGAGGA-TGG  949

seq1  TTATTCTCTCTTTGTAGTTGGACATGGTCTATTAACTACTTCAAATGTGA  1000
      ||||||||||||||||||  ||||||||||| ||||||||||||||||||
seq2  TTATTCTCTCTTTGTAGT--GACATGGTCTA-TAACTACTTCAAATGTGA  996

seq1  CTAGTATGAGCAGTTGTTTGTTATAGGAATTTTGTGTATCGTCTAAATAG  1050
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTAGTATGAGCAGTTGTTTGTTATAGGAATTTTGTGTATCGTCTAAAT-G  1045

seq1  TGGATTATTTTTCATGTAAATAATTTACTAATATTTCCT-CCCACCCAGG  1099
       |||||| ||||||||| ||||  ||||| ||||||||| ||||||||||
seq2  GGGATTA-TTTTCATGT-AATA--TTACT-ATATTTCCTCCCCACCCAGG  1090

seq1  AATTTTTCTTTATTGTAG-AACAATTTAAAATGCGATGAAATGCAG  1144
      |  ||||||||| || || |||||||||||  ||||||||||||||
seq2  A--TTTTCTTTA-TGAAGAAACAATTTAAATGGCGATGAAATGCAG  1133