BAC Information

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BAC

Clone NameB6Ng01-144M10
Chromosome11 (Build37)
Map Location 66,238,538 - 66,328,289
singlet/doubletdoublet
Overlap geneGm879
Upstream geneMap2k4, Zkscan6, Dnahc9
Downstream geneLOC668323, A530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144M10.bB6Ng01-144M10.g
ACCDH942361DH942362
length1,1121,090
definitionDH942361|Mus musculus domesticus DNA, BAC clone: B6Ng01-144M10, 5' end.DH942362|Mus musculus domesticus DNA, BAC clone: B6Ng01-144M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,238,538 - 66,239,668)(66,327,178 - 66,328,289)
sequence
gaattccagatggagctggacaagaagatgaccatttctgggtcacccag
ctgcccaatgccctcgggtagctgcagcagcggggagggtaacctagttt
gcttaggaaatattgtggatgtcccagtttatcagttacagtcctagaaa
agtattggcactgtcctgtttctgcagcttggcctgcagttccacctgcc
agtcccctgctgccccttcagcctgagaaaccaaagcacagagcccagat
attctgctccacatttgggtcttggtttgccccccagtctctcatttccc
tttgggggggttcctagcctggatcaagggtaggctggcatgctagggtg
gtatgtgagaatgaggacatgtttctatttccagggacatttggcctttg
cataagaagctagagacacacattatactagaaattcagaggctgatcag
tttgcttgactgtgaggaccaagcaggcaggatgaagatgctgaagagag
tcaccaatgtagagaaggtactagaaattgaagagacaggagactggaga
gcctgccctagctgcactacaaactggccacttcccttcgggcagcttca
tcctctcttgagtgttctttatcctctcatctgaactgatgatgttcaac
cataatggaggttgtgggagtgacttgacataatcattttgagctttcga
agtcaacctagagtgcatacattgctgatctctagagtttagttctgggt
tctccaactcagtctttcagatgttcacagaaaaacgcccaggtaaagtg
tgaaaacacagtatggaagggtagagcaaaaggtgacacaatcaaccacg
ctccaatccctagggagaggcacaggtgtgtccccagcacatcctcctca
ccaccaaccaaagacacaacagactttcaggacaggaaatcttgtcatca
tcgggaaggtggacatttcattcactgtgagctctaggcagagtccctac
acacttgccttgcgtggcacagcacaggagaaattcaagaatgattgcag
ttgacaagaaaatatgagttctccttttcttcaagccagtacagatcatt
ctccctgtgggt
gaattccctccaggaactcttgcagatttttctctattgcttcttttttc
atttcattttctcatgttcttagaatccacaactttttcagctttgagaa
gtagtgtttgtttacgctgtcatagctgcaggatggccagctgacccttc
gaggaaagggtcccaagctttcagactgggacctacttaggacagcttgc
cctacttatgggggacagaggagctttgttccatttgagggtcttgctca
gtggccttgggtacataaatcgctgtcccaacaccactgttcagaggagg
cagcttcacggcttctgaaagccgtcagcaggcatccttgcctcttctag
ataaaggactttgacatcctccccttcatctgcttatgtgctctccaggg
acagataacagagctcttttctcttaatttgggggttgtcatccatcttc
tcctgctgtggaacattttctaaatgtcaagataaggagccacttccatc
actccatctccatgatcttggtgagtccttttgcccctctggtctattag
ctggaagtgcgataagggagaatacactgtagtggtaatgggcttctctg
gctcattctgaccccagtacacctggaaagtcaggacaacaggtccaggt
gacatcttcagctaaaagcgtagcatccctggggatggaggagaatgcac
ttttccttatacattcctgtatttgtaccttatggtccttgttgaaggac
aaaaatgtcctctgcaaatggcctcataagcatgcttggctttagcgtgt
tatcttatagatactcttggcagaaagggactcagaatgccctgttagtc
tcttctctctggtcatcagctcctctcgtcttagagtgtaagtgttcatt
catttatctattctgcagacagtctggtctactcttggatgcatttagta
cgtcatggggacccaaactggagtctcacttcacagactgcaaacatctc
tagccagcagtcacgcatcatctcttcggattcatcgtttgatcaaatca
atttgtggagtctccaatggacgggactttagcgtctagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_66238538_66239668
seq2: B6Ng01-144M10.b_46_1157

seq1  GAATTCCAGATGGAGCTGGACAAGAAGATGACCATTTCTGGGTCACCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATGGAGCTGGACAAGAAGATGACCATTTCTGGGTCACCCAG  50

seq1  CTGCCCAATGCCCTCGGGTAGCTGCAGCAGCGGGGAGGGTAACCTAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAATGCCCTCGGGTAGCTGCAGCAGCGGGGAGGGTAACCTAGTTT  100

seq1  GCTTAGGAAATATTGTGGATGTCCCAGTTTATCAGTTACAGTCCTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGAAATATTGTGGATGTCCCAGTTTATCAGTTACAGTCCTAGAAA  150

seq1  AGTATTGGCACTGTCCTGTTTCTGCAGCTTGGCCTGCAGTTCCACCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGGCACTGTCCTGTTTCTGCAGCTTGGCCTGCAGTTCCACCTGCC  200

seq1  AGTCCCCTGCTGCCCCTTCAGCCTGAGAAACCAAAGCACAGAGCCCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCTGCTGCCCCTTCAGCCTGAGAAACCAAAGCACAGAGCCCAGAT  250

seq1  ATTCTGCTCCACATTTGGGTCTTGGTTTGCCCCCCAGTCTCTCATTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTCCACATTTGGGTCTTGGTTTGCCCCCCAGTCTCTCATTTCCC  300

seq1  TTTGGGGGGGTTCCTAGCCTGGATCAAGGGTAGGCTGGCATGCTAGGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGGGTTCCTAGCCTGGATCAAGGGTAGGCTGGCATGCTAGGGTG  350

seq1  GTATGTGAGAATGAGGACATGTTTCTATTTCCAGGGACATTTGGCCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGAGAATGAGGACATGTTTCTATTTCCAGGGACATTTGGCCTTTG  400

seq1  CATAAGAAGCTAGAGACACACATTATACTAGAAATTCAGAGGCTGATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAAGCTAGAGACACACATTATACTAGAAATTCAGAGGCTGATCAG  450

seq1  TTTGCTTGACTGTGAGGACCAAGCAGGCAGGATGAAGATGCTGAAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGACTGTGAGGACCAAGCAGGCAGGATGAAGATGCTGAAGAGAG  500

seq1  TCACCAATGTAGAGAAGGTACTAGAAATTGAAGAGACAGGAGACTGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAATGTAGAGAAGGTACTAGAAATTGAAGAGACAGGAGACTGGAGA  550

seq1  GCCTGCCCTAGCTGCACTACAAACTGGCCACTTCCCTTCGGGCAGCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCCTAGCTGCACTACAAACTGGCCACTTCCCTTCGGGCAGCTTCA  600

seq1  TCCTCTCTTGAGTGTTCTTTATCCTCTCATCTGAACTGATGATGTTCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTTGAGTGTTCTTTATCCTCTCATCTGAACTGATGATGTTCAAC  650

seq1  CATAATGGAGGTTGTGGGAGTGACTTGACATAATCATTTTGAGCTTTCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGGAGGTTGTGGGAGTGACTTGACATAATCATTTTGAGCTTTCGA  700

seq1  AGTCAACCTAGAGTGCATACATTGCTGATCTCTAGAGTTTAGTTCTGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACCTAGAGTGCATACATTGCTGATCTCTAGAGTTTAGTTCTGGGT  750

seq1  TCTCCAACTCAGTCTTTCAGATGTTCACAGAAAAACGCCCAGGTAAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAACTCAGTCTTTCAGATGTTCACAGAAAAACGCCCAGGTAAAGTG  800

seq1  TGAAAACACAGTATGGAAGGGTAGAGCAAAAGGTGACACAATCAACCACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACACAGTATGGAAGGGTAGAGCAAAAGGTGACACAATCAACCACG  850

seq1  CTCCAATCCCTAGGGAGAGGCACAGGTGTGTCCCCAGCACATCCTCCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATCCCTAGGGAGAGGCACAGGTGTGTCCCCAGCACATCCTCCTCA  900

seq1  CCAACCAACCAAAGACACAACAGACTTTCAGGACAGGAAAATCTTGTCAT  950
      || |||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CC-ACCAACCAAAGACACAACAGACTTTCAGGACAGG-AAATCTTGTCAT  948

seq1  CATCGGGAAGGTGGACATTTCATTCACTGTGAGCTCTAGGGCAGAGCCCC  1000
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  CATCGGGAAGGTGGACATTTCATTCACTGTGAGCTCTA-GGCAGAGTCCC  997

seq1  TAACCAACAACTTGCCTTGCGTGGCACAGCAACCAGGAGAAATTCAAGAA  1050
      ||  |    ||||||||||||||||||||||  |||||||||||||||||
seq2  TACAC----ACTTGCCTTGCGTGGCACAGCA--CAGGAGAAATTCAAGAA  1041

seq1  TGATTTGCCAGGTGGACAAGAAAATATGAGTTTCTTCTTTTTCCTTTCAT  1100
      ||| ||||   || |||||||||||||||| |||| |||||    |||| 
seq2  TGA-TTGC--AGTTGACAAGAAAATATGAG-TTCTCCTTTT---CTTCAA  1084

seq1  GCCAAATTCACAGATCATTCTCCCTGTGGGT  1131
      ||||     ||||||||||||||||||||||
seq2  GCCA---GTACAGATCATTCTCCCTGTGGGT  1112

seq1: chr11_66327178_66328289
seq2: B6Ng01-144M10.g_67_1156 (reverse)

seq1  GCTAGACAGACTTAAAGTCACGGTCCATGGGAAGACTCACAAATATGGAT  50
      |||||||     ||||||| | |||||| || |||||| || | || |||
seq2  GCTAGAC---GCTAAAGTC-CCGTCCATTGG-AGACTC-CACAAATTGAT  44

seq1  ATTGATTCAAACGATGGATTCTGAAGAGATGATGGCGTGACTGCTGGCTA  100
       |||| ||||||||| || || ||||||||||| ||||||||||||||||
seq2  -TTGA-TCAAACGAT-GAATCCGAAGAGATGAT-GCGTGACTGCTGGCTA  90

seq1  GGAGATGTTTTGCAGTCTTGTGAAGGTGAAGACT-CAGTTTGGGTTCCCC  149
       |||||| ||||||||| |||||| ||| ||||| ||||||||| |||||
seq2  -GAGATG-TTTGCAGTC-TGTGAA-GTG-AGACTCCAGTTTGGG-TCCCC  134

seq1  ATGAACGTTAACTAAAAATGCATTCCAAGAGTAGACCAGACTGTCTGCAG  199
      ||| ||||  |||  ||||||| |||||||||||||||||||||||||||
seq2  ATG-ACGT--ACT--AAATGCA-TCCAAGAGTAGACCAGACTGTCTGCAG  178

seq1  AATAGATAAATGAATGAACACTTACACTCTAAGACGAGAGGAGCTGATGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATAAATGAATGAACACTTACACTCTAAGACGAGAGGAGCTGATGA  228

seq1  CCAGAGAGAAGAGACTAACAGGGCATTCTGAGTCCCTTTCTGCCAAGAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGAAGAGACTAACAGGGCATTCTGAGTCCCTTTCTGCCAAGAGT  278

seq1  ATCTATAAGATAAACACGCTAAAGCCAAGCATGCTTATGAGGCCATTTGC  349
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAAGAT-AACACGCTAAAGCCAAGCATGCTTATGAGGCCATTTGC  327

seq1  AGAGGACATTTTTGTCCTTCAACAAGGACCATAAGGTACAAATACAGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACATTTTTGTCCTTCAACAAGGACCATAAGGTACAAATACAGGAA  377

seq1  TGTATAAGGAAAAGTGCATTCTCCTCCATCCCCAGGGATGCTACGCTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAGGAAAAGTGCATTCTCCTCCATCCCCAGGGATGCTACGCTTTT  427

seq1  AGCTGAAGATGTCACCTGGACCTGTTGTCCTGACTTTCCAGGTGTACTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGATGTCACCTGGACCTGTTGTCCTGACTTTCCAGGTGTACTGG  477

seq1  GGTCAGAATGAGCCAGAGAAGCCCATTACCACTACAGTGTATTCTCCCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAATGAGCCAGAGAAGCCCATTACCACTACAGTGTATTCTCCCTT  527

seq1  ATCGCACTTCCAGCTAATAGACCAGAGGGGCAAAAGGACTCACCAAGATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCACTTCCAGCTAATAGACCAGAGGGGCAAAAGGACTCACCAAGATC  577

seq1  ATGGAGATGGAGTGATGGAAGTGGCTCCTTATCTTGACATTTAGAAAATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATGGAGTGATGGAAGTGGCTCCTTATCTTGACATTTAGAAAATG  627

seq1  TTCCACAGCAGGAGAAGATGGATGACAACCCCCAAATTAAGAGAAAAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGCAGGAGAAGATGGATGACAACCCCCAAATTAAGAGAAAAGAG  677

seq1  CTCTGTTATCTGTCCCTGGAGAGCACATAAGCAGATGAAGGGGAGGATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTATCTGTCCCTGGAGAGCACATAAGCAGATGAAGGGGAGGATGT  727

seq1  CAAAGTCCTTTATCTAGAAGAGGCAAGGATGCCTGCTGACGGCTTTCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCCTTTATCTAGAAGAGGCAAGGATGCCTGCTGACGGCTTTCAGA  777

seq1  AGCCGTGAAGCTGCCTCCTCTGAACAGTGGTGTTGGGACAGCGATTTATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTGAAGCTGCCTCCTCTGAACAGTGGTGTTGGGACAGCGATTTATG  827

seq1  TACCCAAGGCCACTGAGCAAGACCCTCAAATGGAACAAAGCTCCTCTGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAGGCCACTGAGCAAGACCCTCAAATGGAACAAAGCTCCTCTGTC  877

seq1  CCCCATAAGTAGGGCAAGCTGTCCTAAGTAGGTCCCAGTCTGAAAGCTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAAGTAGGGCAAGCTGTCCTAAGTAGGTCCCAGTCTGAAAGCTTG  927

seq1  GGACCCTTTCCTCGAAGGGTCAGCTGGCCATCCTGCAGCTATGACAGCGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTTTCCTCGAAGGGTCAGCTGGCCATCCTGCAGCTATGACAGCGT  977

seq1  AAACAAACACTACTTCTCAAAGCTGAAAAAGTTGTGGATTCTAAGAACAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACACTACTTCTCAAAGCTGAAAAAGTTGTGGATTCTAAGAACAT  1027

seq1  GAGAAAATGAAATGAAAAAAGAAGCAATAGAGAAAAATCTGCAAGAGTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATGAAATGAAAAAAGAAGCAATAGAGAAAAATCTGCAAGAGTTC  1077

seq1  CTGGAGGGAATTC  1112
      |||||||||||||
seq2  CTGGAGGGAATTC  1090