BAC Information

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BAC

Clone NameB6Ng01-149E16
Chromosome4 (Build37)11 (Build37)
Map Location 35,610,406 - 35,610,74223,590,249 - 23,591,192
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream geneLingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149E16.bB6Ng01-149E16.g
ACCDH945667DH945668
length988945
definitionDH945667|Mus musculus domesticus DNA, BAC clone: B6Ng01-149E16, 5' end.DH945668|Mus musculus domesticus DNA, BAC clone: B6Ng01-149E16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,610,406 - 35,610,742)(23,590,249 - 23,591,192)
sequence
gaattcaaggcccatatctaaatacaataaaagcaacatacagcaaacca
gtagccaacatcaaactaaatggagagaaactttgagcaatcccactaaa
atcagggactagacaaggctgcccactctttccctacctattcaatatag
tactcaaagttctagctagagcaattagacaacaaaaggagattcaaagg
aatacaaattggaaaggaagaagtcaaaatattactacttgcagataata
tgatagtatatataagtgaccccaaaaattccaccagagaactcctaaac
ctgataaacagcttcagtgaagtagctggatataaaattaattaactcaa
acaaatcagtggcttttctctatacaaaggataaacaggctgagaaagaa
attagggaaacgacacccttcagaatagtcacaaataatataaaatacct
tgatgtgactaagcaagtgaaaggtctgtgtgataagaacttcaaggctc
tgaagaatgaaatcgaggatctcagaagatggaaagatttcccatactca
tggattggcaggattaatatagtaaacatggctatcttgctgaaagcaat
ctatagattcaatgcaattcccatcaaaattccagctcaattcttcacag
agatagaaagggcaatttgcaaattcatctggaataacaaaaaacctacg
atataaaaaactattgtcaacaataaaagaacctctggtggaatcaccat
gcctgacctcaagctgtactacagagcaattgtgatttaaaaaaaaaaca
aaaaacaaaaaacaaaactgcatggtactggtacagtgacagacaggcag
ataatggaatagaattgaagacacagaaatgaacccacatacctatggtc
acttgatctttgacaaaggaactaaaccatcccagtggaaaaaagacagc
atttttcaacaaatgggtgctggcacactggtgattat
gaattcactctgtagaccaggctggcctcgaacttagaaatctgcctgcc
cctgcctcccaagtgctgggatcaaaggtgtgtgccaccactgcctggcg
ctccttcaggtttgatgaccagtgaaatccgtagtgagggtaattgcacc
agcagctatctatctgttcttgtcagaaagatgtttacaatgagaaatgc
tggaccaaaggaaactcacatcttgaatatggtaaatgcttacaaactga
tctcctaaagaaggaacagtttacaggtgtgtgcacagcgtcatgcctct
aacagcctaggactgttgtaatttaaaatactttctaaccaacttgcaga
agttatcttgttttaatttattcttatttgatttttaaccaattttttaa
atattttcactaggtattttaattttttagctttgctttcttttttattt
tattttgttcttctttatttaagttatactccagattttattccccgccc
cccaacccaccctcccagtgttccacatcccatacctcctccccacaccc
ttgtctccatgaggatgttcccaccccctatccccaaccccacctgatct
ctaaactccctggggcctccagtctcttgagggttaggttcatcatctct
gattgaataaagacctggcagttctctgctgtatatgtgttggggacctc
aaatcagctggtgtatgctgcttggttggttgtccagtgtttgaaagata
tcagggtccagattaattgagactgctggtcctcctacagggtcgccctt
cttctcagcttctttcagccttccctaattcaaccacaggtgtcagaagc
ttctgtccattggttgggtgcaaacatctgcacctgatttctttcttctg
cttgttgggagtatagtcatgctagtccctttttgtgagcgttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35610406_35610742
seq2: B6Ng01-149E16.b_144_485 (reverse)

seq1  ATTATTTGTGACTATTGAGAAGGGTGTTGTTTCCCTAATTTCTTTCTCAG  50
      ||||||||||||||||  ||||||||| ||||||||||||||||||||||
seq2  ATTATTTGTGACTATTCTGAAGGGTGTCGTTTCCCTAATTTCTTTCTCAG  50

seq1  CCTGTTTATTCTTTGTGTAGAGAAAGGCCATTGACTTGTTTGAG----TT  96
      ||||||||| |||||| |||||||| |||| ||| |||||||||    ||
seq2  CCTGTTTATCCTTTGTATAGAGAAAAGCCACTGATTTGTTTGAGTTAATT  100

seq1  AATTTTATATCCAGCTACTTCACTGAAGCTGTTTATCAGGTTTAGGAGTT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATATCCAGCTACTTCACTGAAGCTGTTTATCAGGTTTAGGAGTT  150

seq1  CTCTGGTAGAATTTTTAGGGTCACTTATATATACTATCATATCATCTGCA  196
      ||||||| |||||||| ||||||||||||||||||||||||| |||||||
seq2  CTCTGGTGGAATTTTTGGGGTCACTTATATATACTATCATATTATCTGCA  200

seq1  AAAAGTTATATTTTGACTTCATCTTTTCCAATTTGTATCCCCTTG-ATCC  245
      |  ||| ||||||||||||| || |||||||||||||| || ||| ||| 
seq2  AGTAGTAATATTTTGACTTCTTCCTTTCCAATTTGTATTCCTTTGAATCT  250

seq1  CCTTTTGTTGTCAAATTGCTCTGGCTAGGACTTCAAGTACAATGTTGAAT  295
      |||||||||||| ||||||||| ||||| ||||  ||||| || ||||||
seq2  CCTTTTGTTGTCTAATTGCTCTAGCTAGAACTTTGAGTACTATATTGAAT  300

seq1  AGATAGGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTT  337
      || |||||| | ||||||||||||||||||||||||||||||
seq2  AGGTAGGGAAAGAGTGGGCAGCCTTGTCTAGTCCCTGATTTT  342

seq1: chr11_23590249_23591192
seq2: B6Ng01-149E16.g_67_1007

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTTAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTTAGAAATCTGCCTGCC  50

seq1  CCTGCCTCCCAAGTGCTGGGATCAAAGGTGTGTGCCACCACTGCCTGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCCCAAGTGCTGGGATCAAAGGTGTGTGCCACCACTGCCTGGCG  100

seq1  CTCCTTCAGGTTTGATGACCAGTGAAATCCGTAGTGAGGGTAATTGCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCAGGTTTGATGACCAGTGAAATCCGTAGTGAGGGTAATTGCACC  150

seq1  AGCAGCTATCTATCTGTTCTTGTCAGAAAGATGTTTACAATGAGAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTATCTATCTGTTCTTGTCAGAAAGATGTTTACAATGAGAAATGC  200

seq1  TGGACCAAAGGAAACTCACATCTTGAATATGGTAAATGCTTACAAACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAAAGGAAACTCACATCTTGAATATGGTAAATGCTTACAAACTGA  250

seq1  TCTCCTAAAGAAGGAACAGTTTACAGGTGTGTGCACAGCGTCATGCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAAGAAGGAACAGTTTACAGGTGTGTGCACAGCGTCATGCCTCT  300

seq1  AACAGCCTAGGACTGTTGTAATTTAAAATACTTTCTAACCAACTTGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTAGGACTGTTGTAATTTAAAATACTTTCTAACCAACTTGCAGA  350

seq1  AGTTATCTTGTTTTAATTTATTCTTATTTGATTTTTAACCAATTTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCTTGTTTTAATTTATTCTTATTTGATTTTTAACCAATTTTTTAA  400

seq1  ATATTTTCACTAGGTATTTTAATTTTTTAGCTTTGCTTTCTTTTTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCACTAGGTATTTTAATTTTTTAGCTTTGCTTTCTTTTTTATTT  450

seq1  TATTTTGTTCTTCTTTATTTAAGTTATACTCCAGATTTTATTCCCCGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTCTTCTTTATTTAAGTTATACTCCAGATTTTATTCCCCGCCC  500

seq1  CCCAACCCACCCTCCCAGTGTTCCACATCCCATACCTCCTCCCCACACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCCACCCTCCCAGTGTTCCACATCCCATACCTCCTCCCCACACCC  550

seq1  TTGTCTCCATGAGGATGTTCCCACCCCCTATCCCCAACCCCACCTGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCCATGAGGATGTTCCCACCCCCTATCCCCAACCCCACCTGATCT  600

seq1  CTAAACTCCCTGGGGCCTCCAGTCTCTTGAGGGTTAGGTTCATCATCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTCCCTGGGGCCTCCAGTCTCTTGAGGGTTAGGTTCATCATCTCT  650

seq1  GATTGAATAAAGACCTGGCAGTTCTCTGCTGTATATGTGTTGGGGACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAATAAAGACCTGGCAGTTCTCTGCTGTATATGTGTTGGGGACCTC  700

seq1  AAATCAGCTGGTGTATGCTGCTTGGTTGGTTGTCCAGTGTTTGAAAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCTGGTGTATGCTGCTTGGTTGGTTGTCCAGTGTTTGAAAGATA  750

seq1  TCAGGGGTCCAGATTAATTGAGACTGCTGGTCCTCCTACAGGGTCGCCCT  800
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-GGGTCCAGATTAATTGAGACTGCTGGTCCTCCTACAGGGTCGCCCT  799

seq1  TCTTCTCAGCTTCTTTCAGCCTTCCCTAATTCAACCACAGGGGTCAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTTCTCAGCTTCTTTCAGCCTTCCCTAATTCAACCACAGGTGTCAGAAG  849

seq1  CTTCTGTCCATTGGTTGGGTGCAAACATCTGCACCTGATTTCTTTCGTCT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTCTGTCCATTGGTTGGGTGCAAACATCTGCACCTGATTTCTTTCTTCT  899

seq1  GCTTGTTGGGAGTATAGTCATGCTAGGTCCCTTTTTTGTGAGCG  944
      ||||||||||||||||||||||||| ||||| ||||||||||||
seq2  GCTTGTTGGGAGTATAGTCATGCTA-GTCCC-TTTTTGTGAGCG  941