BAC Information

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BAC

Clone NameB6Ng01-149P21
Chromosome11 (Build37)
Map Location 23,405,932 - 23,580,004
singlet/doubletdoublet
Overlap gene1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik
Upstream geneTmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202, Ahsa2
Downstream geneRel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149P21.bB6Ng01-149P21.g
ACCDH946184DH946185
length1,045553
definitionDH946184|Mus musculus domesticus DNA, BAC clone: B6Ng01-149P21, 5' end.DH946185|Mus musculus domesticus DNA, BAC clone: B6Ng01-149P21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,405,932 - 23,406,691)(23,579,441 - 23,580,004)
sequence
gaattctttatgtatatgaatacactgtagctgtcttcagacacaccaga
agaggacgtcagatcccattacggatggttgtgaaccatcatatggttgc
tgagatttgaactcaggacctctggaagagtagtcagtgctcttaaccac
agagctattgaaaaagttattgaaacataaaaactaggtctttagaccca
ggcttgagaatgtgacctttgtgactcaatgctccaaggcatgttaatca
taaaacagatatcgacattcctccacccaccctcttcctgggttcaggga
gtgtttgttcaaaatggaccaccctgaccattcatggaacctgctatgca
aatgtgctattattaagggctcatagaaactgtcttgagaaataactcgc
acaattaccaggtattccttgtgactcttgtgactttgcacttcttctgc
ttttctgctgctttgacccttttcctctgctttgacccttttcctctgtt
ttgacccttaactagtatttttggtattttccaacaatgccctccccacc
cccttgagttgtggtttcttcctttaaatacccccttacccagctacttg
gcgcgccatggtcctctacctctgtgtggtgtatgactgtgggcccgaga
gtgctcttgaaataaaagtcctcttgcagtttgcatcaagaccatttctt
gtgagtgattgggaatgtcacctctcctgagtcagaacatggggggagtc
ctcacattgtaggtctttcactatttctccagccccccccccccattact
taatggcaaagaagagtttaaaggatcagagtgagtacggtggctaaagg
gaattactggtgtcacaattattttgtccacagctctggtgctctcaaac
gtgcccatttcttctacttacagaagcctctgcttcaccagcaaggctta
ctccaacacttcttcctccttggggctggagagatggttagagcactggc
tgctctccagagattgagtttgatttccagatcacatggcaacca
gaattcattattttcttcagatcctaaatgagatcaacggatccaaattg
gtaagaccacaaattaaaaaaaaaaaaaaaaaaaaaaacctttaaaaatt
taattttttaaatttttttaaaaataaatttcttaaattaaaaaaaaaag
ggtgctgccaaattgggaatttttttctttcccaattccaaattttttat
ggcaaacctggaaaccaaaaaatttttttgaacccgggggggggggcccc
cccttttattcccgcccttgggggggcaaaggcgggcaatttttggattt
caagcccgcccgggcctccaagggggttcccggaacgcccggggtggtcc
aaaaaacccctgtttcagggaaaaaaaaaaaaaaagaaaagaaaaggaag
gaatttttttttaactgacaaaaaaccccctttcaaacttgacctttaaa
aacaggtgcttctataacagagtacatttttgatgcaaaaaactcattta
aggtccctagggtgaacaaagggtcatcatttctagccatagatggaaat
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_23405932_23406691
seq2: B6Ng01-149P21.b_337_1092

seq1  GGGTTCAGGGAGTGTTTGTTCAAAATGGACCACCCTGACCATTCATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAGGGAGTGTTTGTTCAAAATGGACCACCCTGACCATTCATGGAA  50

seq1  CCTGCTATGCAAATGTGCTATTATTAAGGGCTCATAGAAACTGTCTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTATGCAAATGTGCTATTATTAAGGGCTCATAGAAACTGTCTTGAG  100

seq1  AAATAACTCGCACAATTACCAGGTATTCCTTGTGACTCTTGTGACTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTCGCACAATTACCAGGTATTCCTTGTGACTCTTGTGACTTTGC  150

seq1  ACTTCTTCTGCTTTTCTGCTGCTTTGACCCTTTTCCTCTGCTTTGACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCTGCTTTTCTGCTGCTTTGACCCTTTTCCTCTGCTTTGACCCT  200

seq1  TTTCCTCTGTTTTGACCCTTAACTAGTATTTTTGGTATTTTCCAACAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTGTTTTGACCCTTAACTAGTATTTTTGGTATTTTCCAACAATG  250

seq1  CCCTCCCCACCCCCTTGAGTTGTGGTTTCTTCCTTTAAATACCCCCTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCACCCCCTTGAGTTGTGGTTTCTTCCTTTAAATACCCCCTTAC  300

seq1  CCAGCTACTTGGCGCGCCATGGTCCTCTACCTCTGTGTGGTGTATGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTACTTGGCGCGCCATGGTCCTCTACCTCTGTGTGGTGTATGACTG  350

seq1  TGGGCCCGAGAGTGCTCTTGAAATAAAAGTCCTCTTGCAGTTTGCATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCGAGAGTGCTCTTGAAATAAAAGTCCTCTTGCAGTTTGCATCAA  400

seq1  GACCATTTCTTGTGAGTGATTGGGAATGTCACCTCTCCTGAGTCAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTTCTTGTGAGTGATTGGGAATGTCACCTCTCCTGAGTCAGAACA  450

seq1  T-GGGGGAGTCCTCACATTGTAGGTCTTTCACTATTTCTCCAGCCCCCCC  499
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGAGTCCTCACATTGTAGGTCTTTCACTATTTCTCCAGCCCCCCC  500

seq1  CCCCCATTACTTAATGGCAAAGAAGAG-TTAAAGGATCAGAGTGAGTACG  548
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCCCCATTACTTAATGGCAAAGAAGAGTTTAAAGGATCAGAGTGAGTACG  550

seq1  GTGGCT-AAGGGAATTACTGGTGTCACAATTATTTTGTCCACAGCTCTGG  597
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAAAGGGAATTACTGGTGTCACAATTATTTTGTCCACAGCTCTGG  600

seq1  TGCTCTCAAACGTGCCCATTTCTTCTACTTACAGAAGCCTCTGCTTCACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCAAACGTGCCCATTTCTTCTACTTACAGAAGCCTCTGCTTCACC  650

seq1  AGCAAGGCTTTACTCCAACACTTCTTCCTCCTTGGGGCTGGAGAGATGGT  697
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGC-TTACTCCAACACTTCTTCCTCCTTGGGGCTGGAGAGATGGT  699

seq1  TAAGAGCACTGGCTGCTCTTCCAGAGGAATGAGTTTTGATTCCCAGGATT  747
      | |||||||||||||||| |||||| || |||| ||||||| ||||   |
seq2  T-AGAGCACTGGCTGCTC-TCCAGA-GATTGAG-TTTGATTTCCAG--AT  743

seq1  CACATGGCAACCA  760
      |||||||||||||
seq2  CACATGGCAACCA  756

seq1: chr11_23579441_23580004
seq2: B6Ng01-149P21.g_70_622 (reverse)

seq1  TTCATTTCCATCTTATGGCTAGTATATGATGACCCCTTTGTTCACCCTAG  50
      |||||||||||| ||||||||| | ||||||| |||||||||||||||||
seq2  TTCATTTCCATC-TATGGCTAG-AAATGATGA-CCCTTTGTTCACCCTAG  47

seq1  TGACCTTAAATGAGTTATATTGCATCATAAATGTTACTCTGATCATATGA  100
       ||||||||||||||| | |||||||| ||||| ||||||| | ||| ||
seq2  GGACCTTAAATGAGTT-TTTTGCATCAAAAATG-TACTCTG-TTATA-GA  93

seq1  AGCACCCTGTTTCTCAATGTTCAGTATGATATGGAGTTTTGTTTGTCAGA  150
      |||| ||||||| | || ||  ||| ||| | || ||||  |||||||| 
seq2  AGCA-CCTGTTTTTAAAGGTCAAGTTTGAAAGGGGGTTT--TTTGTCAGT  140

seq1  TCAAAATATATTTCTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTCCCTGA  200
      | |||| | ||| ||| ||||||||||| |||||||||||||||||||||
seq2  TAAAAAAAAATTCCTTCCTTTTCTTTTC-TTTTTTTTTTTTTTTCCCTGA  189

seq1  AACAGGGTTTCTCTGTA-CAGCCCTGGCTGTCCTGGAACTCACTTTGTAG  249
      ||||||| || | || | || ||| |||  ||| ||||| | | ||| ||
seq2  AACAGGGGTTTTTTGGACCACCCCGGGCGTTCCGGGAAC-CCCCTTGGAG  238

seq1  ACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTG-CCTCCCTAGT  298
       || ||  || |||||| ||  |||  |||| |||| || || ||| || 
seq2  GCCCGGGCGGGCTTGAAATCCAAAAATTGCCCGCCTTTGCCCCCCCAAGG  288

seq1  GCTGAGATTAAAGGCGTGCGCCACCACACCTGGCTCAAAATATATTTTTT  348
      || |  || ||||| | |  || || | || || |||||| |  ||||| 
seq2  GCGGGAATAAAAGGGGGGGCCCCCCCCCCCGGGTTCAAAAAAATTTTTTG  338

seq1  GTTTCCATGCTTTGCATTAAATAGTCTGAATTAGGTAAGAATAAAATTAC  398
      ||||||| | ||  ||| ||| | |  ||||| || ||||| |||||| |
seq2  GTTTCCAGGTTTGCCATAAAAAATTTGGAATTGGGAAAGAAAAAAATTCC  388

seq1  CAATTCTGCAGCAGCACTTTTTCTTTAATTTAAGAAATTATATTTTAAAA  448
      |||||  |||||| |  ||||| ||||||||||||||||   ||||||||
seq2  CAATTTGGCAGCACCCTTTTTTTTTTAATTTAAGAAATTTATTTTTAAAA  438

seq1  AAATTTCATAAATTAATATTTTAAATGTTTTTTTTTTTTTTTTTTTTTTT  498
      |||||| | ||||||| ||||| || | ||||||||||||||||||||||
seq2  AAATTTAAAAAATTAA-ATTTTTAAAGGTTTTTTTTTTTTTTTTTTTTTT  487

seq1  TAATTTGTGGTCTTACCAATTTGGATCCGTTGATCTCATTTAGGATCTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTGGTCTTACCAATTTGGATCCGTTGATCTCATTTAGGATCTGA  537

seq1  AGAAAATAATGAATTC  564
      ||||||||||||||||
seq2  AGAAAATAATGAATTC  553