BAC Information

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BAC

Clone NameB6Ng01-150G03
Chromosome11 (Build37)
Map Location 21,977,035 - 22,083,166
singlet/doubletdoublet
Overlap geneEhbp1
Upstream genePeli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1
Downstream geneLOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150G03.bB6Ng01-150G03.g
ACCDH946475DH946476
length1,1711,083
definitionDH946475|Mus musculus domesticus DNA, BAC clone: B6Ng01-150G03, 5' end.DH946476|Mus musculus domesticus DNA, BAC clone: B6Ng01-150G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,977,035 - 21,978,204)(22,082,077 - 22,083,166)
sequence
gaattcccagtagctactatctttctctaaaaaaataattattttaggat
tataaaagcaattatgttgtgtttttgaaaacttcaaactgcattagcag
aactaatggaaatagtttgggcctccaaaaagaggagcctttgataattt
aattcctctcctctttgtgaaactgataacttcttagtttaaaaaaatta
taagaaaaaaggaggaatggctgagtaagtatcacctcgtgctatatcca
aggcctcttgctggttgtctggctgctcttttgtaggcaaaaaggagctg
aacgctctctggctccttagatctggcccaacaaatgcactgccagtcat
gcacacggatctagcttaaacccagtgtgagcctaaaagaagccagtcag
actggcacccactcatgcagaaggagatagatttgtcatgacaggctgac
tattcaatgtaaagaaacagtttagcttttctaatctggtacaaatacat
ctttctcagcaaaaaaagtaaaaggtctaacagttcaagtatttaaagta
gagaaatcaacacaaaaatggaacagcaaagtaaaccataggtattggtg
ctaaagtattctgcgaaactgtcccgaggctccatgcagataagtaagac
ttagccttcagaagtacagcacagcatgtgtgtgtgtcacaataacggac
aataatactcgtatggtctttaactagagaaactgagaaggcaaacttat
ctactctctgtacattgtatgcctggcagatgttgatgtctctcgtcttc
tttcagatatgatatgccgctcttgcactggcataaaagaccctaggaca
attggcacctaatgacgctcaccttcatcttaaacagtgagtgacccttt
gtaacttctgttgctagcactgtgacttgtaaaccatctatttgtgactt
ataaactatctatgtgtgactagctttgtattaccccagaacaaggttcc
aaaaaaggtgaaatttaatactgacaacagtaatgaatggtggaatggag
cagaactggagaacatacgtttagccgttaagaaagcacagcgtactatt
atggatcatgccttctcgctcaaagccaaacatactctatgcctttaagc
ttggcgttgagactgcctcaa
gaattctttgttcagctctgagccccatcttttaagggggctatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttgttggtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaattctcgatcttaaagcacaagccattgctgtt
ctattcaggaatttttttccctgtgcccatatcttcgagacttttcaggc
tttattcttgattcatatgtacatcactcctgtgatttgacagtagttta
agtgtactagacaattaaaaatagaatattgttaatttcacaatttttat
ttgtattaaaataaatactaatagatacaatccacataggagaatctttt
tagagttcttgaatcatgtgcagtcttgagacaaaatcccttacaaacta
ttgatctaatctccagaaaaagcagtggaaaatagattgggttattttat
ctttatttatttatttatttatttctttatttatttctttatttttggta
gatatgctgtttacaagagacagtcctaaaatcagaggaggtgaaatgtc
aaacagaggggcagaaacccataagaaggtctgtggctcctggtttgaga
gcagtttgttaggtagttcacttccctcctaactgcaaacttccaggtcc
atgttggtagcatctgttttctgcagagtgctctgttgtatttctcgggg
gatggggtgttgatagcttatcgttgcagttcaacaccacctatgtgagt
cagtgcaggggtccatccctatcttgttctgtttatcctatgtctcagct
gtctaccgttgctgacctatctggctgggaacaaacctctgcctactcta
taactgctagtagttataaattgaaagctactctacatgggaagccatat
atccctcttctcttttagacgaggaatgcctttggtgagtaccttaatag
gtatgtgaaaaatcttaaacgaagaaactaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_21977035_21978204
seq2: B6Ng01-150G03.b_42_1212

seq1  GAATTCCCAGTAGCTACTATCTTTCTCTAAAAAAATAATTATTTTAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGTAGCTACTATCTTTCTCTAAAAAAATAATTATTTTAGGAT  50

seq1  TATAAAAGCAATTATGTTGTGTTTTTGAAAACTTCAAACTGCATTAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGCAATTATGTTGTGTTTTTGAAAACTTCAAACTGCATTAGCAG  100

seq1  AACTAATGGAAATAGTTTGGGCCTCCAAAAAGAGGAGCCTTTGATAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGGAAATAGTTTGGGCCTCCAAAAAGAGGAGCCTTTGATAATTT  150

seq1  AATTCCTCTCCTCTTTGTGAAACTGATAACTTCTTAGTTTAAAAAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTCTCCTCTTTGTGAAACTGATAACTTCTTAGTTTAAAAAAATTA  200

seq1  TAAGAAAAAAGGAGGAATGGCTGAGTAAGTATCACCTCGTGCTATATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAAAGGAGGAATGGCTGAGTAAGTATCACCTCGTGCTATATCCA  250

seq1  AGGCCTCTTGCTGGTTGTCTGGCTGCTCTTTTGTAGGCAAAAAGGAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCTTGCTGGTTGTCTGGCTGCTCTTTTGTAGGCAAAAAGGAGCTG  300

seq1  AACGCTCTCTGGCTCCTTAGATCTGGCCCAACAAATGCACTGCCAGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTCTCTGGCTCCTTAGATCTGGCCCAACAAATGCACTGCCAGTCAT  350

seq1  GCACACGGATCTAGCTTAAACCCAGTGTGAGCCTAAAAGAAGCCAGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGGATCTAGCTTAAACCCAGTGTGAGCCTAAAAGAAGCCAGTCAG  400

seq1  ACTGGCACCCACTCATGCAGAAGGAGATAGATTTGTCATGACAGGCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCACCCACTCATGCAGAAGGAGATAGATTTGTCATGACAGGCTGAC  450

seq1  TATTCAATGTAAAGAAACAGTTTAGCTTTTCTAATCTGGTACAAATACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATGTAAAGAAACAGTTTAGCTTTTCTAATCTGGTACAAATACAT  500

seq1  CTTTCTCAGCAAAAAAAGTAAAAGGTCTAACAGTTCAAGTATTTAAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAGCAAAAAAAGTAAAAGGTCTAACAGTTCAAGTATTTAAAGTA  550

seq1  GAGAAATCAACACAAAAATGGAACAGCAAAGTAAACCATAGGTATTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATCAACACAAAAATGGAACAGCAAAGTAAACCATAGGTATTGGTG  600

seq1  CTAAAGTATTCTGCGAAACTGTCCCGAGGCTCCATGCAGATAAGTAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTATTCTGCGAAACTGTCCCGAGGCTCCATGCAGATAAGTAAGAC  650

seq1  TTAGCCTTCAGAAGTACAGCACAGCATGTGTGTGTGTCACAATAACGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTTCAGAAGTACAGCACAGCATGTGTGTGTGTCACAATAACGGAC  700

seq1  AATAATACTCGTATGGTCTTTAACTAGAGAAACTGAGAAGGCAAACTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACTCGTATGGTCTTTAACTAGAGAAACTGAGAAGGCAAACTTAT  750

seq1  CTACTCTCTGTACATTGTATGCCTGGCAGATGTTGATGTCTCTCGTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTCTGTACATTGTATGCCTGGCAGATGTTGATGTCTCTCGTCTTC  800

seq1  TTTCAGATATGATATGCCGCTCTTGCACTGGCATAAAAGACCCTAGGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATATGATATGCCGCTCTTGCACTGGCATAAAAGACCCTAGGACA  850

seq1  ATTGGCACCTAATGACGCTCACCTTCATCTTAAACAGTGAGTGACCCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCACCTAATGACGCTCACCTTCATCTTAAACAGTGAGTGACCCTTT  900

seq1  GTAACTTCTGTTGCTAGCACTGTGACTTGTAAACCATCTATTTGTGACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTCTGTTGCTAGCACTGTGACTTGTAAACCATCTATTTGTGACTT  950

seq1  ATAAACTATCTATGTGTGACTAGCTTTGTATTACCCCAGAACAAGGTTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTATCTATGTGTGACTAGCTTTGTATTACCCCAGAACAAGGTTCC  1000

seq1  AAAAAAGGTGAAATTTAATACTGACAACAGTAATGAAT-GTGGAAT-GAG  1048
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  AAAAAAGGTGAAATTTAATACTGACAACAGTAATGAATGGTGGAATGGAG  1050

seq1  CAGAACT-GAG-ACATACG-TTAGCGTTTAAAGAAAGCACAGCGTACCTA  1095
      ||||||| ||| ||||||| |||||  || |||||||||||||||| |||
seq2  CAGAACTGGAGAACATACGTTTAGCCGTT-AAGAAAGCACAGCGTA-CTA  1098

seq1  TTATGATCCATG-CTTCT-GCTCAAAGCACAACATACTCTATGCCTTTTA  1143
      |||||   |||| ||||| |||||||||  ||||||||||||||||||  
seq2  TTATGGATCATGCCTTCTCGCTCAAAGCCAAACATACTCTATGCCTTT--  1146

seq1  AAAGCTATGCTGTGAAGACTGCCTCAA  1170
       ||||| ||  ||  ||||||||||||
seq2  -AAGCT-TGGCGTTGAGACTGCCTCAA  1171

seq1: chr11_22082077_22083166
seq2: B6Ng01-150G03.g_65_1147 (reverse)

seq1  TATTAGTTTCTTCTGTTTAAGATTTTTTTCACATACCTA-TAAGGTACCT  49
      ||||||||||||| ||||||||  ||||||||||||||| ||||||||  
seq2  TATTAGTTTCTTC-GTTTAAGA--TTTTTCACATACCTATTAAGGTAC--  45

seq1  TCA-CAAAGGCATTCCTCGTCTTAAAAGAGGAAGAGGGATATATGGCTTC  98
      ||| ||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  TCACCAAAGGCATTCCTCGTC-TAAAAGA-GAAGAGGGATATATGGCTTC  93

seq1  CCATGGTAGAGTAGCTTTCAATTTATAACCTACTAGCAGTTATAGAGGTA  148
      |||| ||||||||||||||||||||||| ||||||||||||||||| |||
seq2  CCAT-GTAGAGTAGCTTTCAATTTATAA-CTACTAGCAGTTATAGA-GTA  140

seq1  GGCAGAGGTTTGTT-CCAGCCAGATAGGTCAGCAACGGTAGACAGCTGAG  197
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGTTTGTTCCCAGCCAGATAGGTCAGCAACGGTAGACAGCTGAG  190

seq1  ACATAGGATAAACAGAACAAGATAGGGATGGACCCCTGCACTGACTCACA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGATAAACAGAACAAGATAGGGATGGACCCCTGCACTGACTCACA  240

seq1  TAGGTGGTGTTGAACTGCAACGATAAGCTATCAACACCCCATCCCCCGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGTGTTGAACTGCAACGATAAGCTATCAACACCCCATCCCCCGAG  290

seq1  AAATACAACAGAGCACTCTGCAGAAAACAGATGCTACCAACATGGACCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAACAGAGCACTCTGCAGAAAACAGATGCTACCAACATGGACCTG  340

seq1  GAAGTTTGCAGTTAGGAGGGAAGTGAACTACCTAACAAACTGCTCTCAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTGCAGTTAGGAGGGAAGTGAACTACCTAACAAACTGCTCTCAAA  390

seq1  CCAGGAGCCACAGACCTTCTTATGGGTTTCTGCCCCTCTGTTTGACATTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCCACAGACCTTCTTATGGGTTTCTGCCCCTCTGTTTGACATTT  440

seq1  CACCTCCTCTGATTTTAGGACTGTCTCTTGTAAACAGCATATCTACCAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTCTGATTTTAGGACTGTCTCTTGTAAACAGCATATCTACCAAA  490

seq1  AATAAAGAAATAAATAAAGAAATAAATAAATAAATAAATAAAGATAAAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAAATAAATAAAGAAATAAATAAATAAATAAATAAAGATAAAAT  540

seq1  AACCCAATCTATTTTCCACTGCTTTTTCTGGAGATTAGATCAATAGTTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAATCTATTTTCCACTGCTTTTTCTGGAGATTAGATCAATAGTTTG  590

seq1  TAAGGGATTTTGTCTCAAGACTGCACATGATTCAAGAACTCTAAAAAGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGATTTTGTCTCAAGACTGCACATGATTCAAGAACTCTAAAAAGAT  640

seq1  TCTCCTATGTGGATTGTATCTATTAGTATTTATTTTAATACAAATAAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTATGTGGATTGTATCTATTAGTATTTATTTTAATACAAATAAAAA  690

seq1  TTGTGAAATTAACAATATTCTATTTTTAATTGTCTAGTACACTTAAACTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAATTAACAATATTCTATTTTTAATTGTCTAGTACACTTAAACTA  740

seq1  CTGTCAAATCACAGGAGTGATGTACATATGAATCAAGAATAAAGCCTGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAATCACAGGAGTGATGTACATATGAATCAAGAATAAAGCCTGAA  790

seq1  AAGTCTCGAAGATATGGGCACAGGGAAAAAAATTCCTGAATAGAACAGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCGAAGATATGGGCACAGGGAAAAAAATTCCTGAATAGAACAGCA  840

seq1  ATGGCTTGTGCTTTAAGATCGAGAATTGACAAATGGGACCTCATGAAACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGTGCTTTAAGATCGAGAATTGACAAATGGGACCTCATGAAACT  890

seq1  GCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAA  940

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  990

seq1  ATATCCAATATATATAAAGAACTCAAGAGGGTGGACTCCAGAAAATCAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAATATATATAAAGAACTCAAGAGGGTGGACTCCAGAAAATCAAA  1040

seq1  TAGCCCCCTTAAAAGATGGGGCTCAGAGCTGAACAAAGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCCTTAAAAGATGGGGCTCAGAGCTGAACAAAGAATTC  1083