BAC Information

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BAC

Clone NameB6Ng01-152M24
Chromosome11 (Build37)
Map Location 71,407,905 - 71,459,036
singlet/doubletdoublet
Overlap genenone
Upstream geneMink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
Downstream geneWscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152M24.bB6Ng01-152M24.g
ACCDH948295DH948296
length1,194809
definitionDH948295|Mus musculus domesticus DNA, BAC clone: B6Ng01-152M24, 5' end.DH948296|Mus musculus domesticus DNA, BAC clone: B6Ng01-152M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,457,845 - 71,459,036)(71,407,905 - 71,408,716)
sequence
gaattcacaatagaggacttgactcgattcagatagcaggcagccttcag
tcatgtgtctgtcaagttaaagacactcaggcttagaggttgtaagcctg
gaatacaggtctggtaccctcagagagataacctccattaacctctcaaa
gagagcatttgattctatcttctagccttcattcagcaggatacaagact
gatatcacctccaggaaggatagatcctgcctgtttccttctggtgttgg
tactctgaactacacagcaattgtgatacaggagtggcgtattgagaggc
tcagagtggcttattctccgcatattcttgagtcgagaaaaccaccaggg
tcttgtgccaagagacagggttggaggtctttcttcctttcctcctaagg
taatcaaacggctcatggacaaccataacagatggaagcataacctttaa
tgtggggaaagaactctagcaggcaggtttggtgaagatatgaaggctgt
gcgaagcttccagcagaatatctgctatgtaaattgaccatgccacttcc
cacttaaaaccttccagttatagacttttgtataattagaagacaattca
cactcttcacatgatctgtggacccccatcctgagctagcgtctgcctgc
ttctatggactctctggcttacttcccattctcttcttcctcctcagaca
cagagacagcattcccacccagtgtctcccaatactctgatctcttttgt
taagacgttttctcactcagctctctgaggtgtcaatgcatcagacgagc
acaggatggaagacaagctcactgtgcaactatactttgtgataactggg
ttctaaaactgtctcagtggttatcattcccacccatccctaaatggaaa
ctagacatatcctctgttttcctgcatgttcttgggtaatggacactcct
gtaaccacttccagtcagaagttgtaaagtgcctgggcccaaagtatcaa
ctagcactttaagaaaagaagaaacccctttcttcatctctacatatagg
tttgtacctgaaagaacctggtttttgaaaaatgaccccaattggggaac
gcccctctctctgcccattttttctctacattctggctgcaattcccttt
cctcaaagtagaacaagtcaggtcaaatggcatgctttctctaa
gaattctctacaatcatttaaatctgctccggttttcctctcatctccac
cacaccaccccacttctgagattaattcttcccttaaacaatggaagata
gatggatttcttgttccttcaactgattaaaatcacttcctctgttgaga
gtccattcatgcagaaagagtgcttccgaatgctagcccagcatccagct
tcgtgccctagaattgcagcctgtgatgtttaaacataccgcttcctccc
tagcaccatcacagagactgcaaatgccctgccaaggtctgggatgctcc
ccattcagccacagatggaggatggaccaactgctgagcccctctcggag
gcataagtcccattctacaacattcagaaacagggctggggcttaggagc
aagatgtcaataaaactaagtcatagagtcccagttgcacagacagaatt
tgaaccaaggcctggttcactacaaagcatattctagctgcttgattcca
tgaatgcttattaagtaactgcatatatgccaagtgcttggatccacaag
tgttaaggctccctgtttccataagcatccagaaatgataaatatatata
gtgaatgaaccagtcacgccttagcactatagcaggtgctcagagggaaa
aagacctgaatgtttataaagcacattagatttataaagtgccgcatgct
gtttgagttgccagaagctagcttttgaagggggggggggcgctacccca
ttttagaccccagcacatttctttcagtgacctcctaggcccctagccct
gggggatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71457845_71459036
seq2: B6Ng01-152M24.b_42_1235 (reverse)

seq1  TTAGAGAGAAGCATGCCACTTGA-CTGACCTTGTGTCTACCTTTGAGGGA  49
      ||||||| |||||||||| |||| |||| ||||| |||| |||||||| |
seq2  TTAGAGA-AAGCATGCCATTTGACCTGA-CTTGT-TCTA-CTTTGAGGAA  46

seq1  AGTGAAATAGCAGCCAGGAAGTGAGAGAGAAAATGAGCAGAGAGAGAGGG  99
      || | ||| |||||||| | || ||||| |||||| |||||||||| |||
seq2  AG-GGAATTGCAGCCAGAATGT-AGAGAAAAAATGGGCAGAGAGAG-GGG  93

seq1  GGGTCACCAATTGTGG-CATTCTTCAAAGA-CAGGGTC-TTCAGGTACAA  146
       | || ||||||| || |||| |||||| | |||| || |||||||||||
seq2  CGTTCCCCAATTGGGGTCATTTTTCAAAAACCAGGTTCTTTCAGGTACAA  143

seq1  ACCTATATGT-GAAGTGAAGAAGGGG---TCTTCTCTTCTTAAAGTGCTA  192
      |||||||||| ||  ||||||| |||   |||||| ||||||||||||||
seq2  ACCTATATGTAGAGATGAAGAAAGGGGTTTCTTCTTTTCTTAAAGTGCTA  193

seq1  GTTGATACTTTGGG-CCAGGCACTTTTACAACTTCTGACTGGAAGTGGTT  241
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  GTTGATACTTTGGGCCCAGGCAC-TTTACAACTTCTGACTGGAAGTGGTT  242

seq1  ACAGGAGTGTCCATTACCCAAGAACATGCAGGAAAACAGAGGATATGTCT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTGTCCATTACCCAAGAACATGCAGGAAAACAGAGGATATGTCT  292

seq1  AGTTTCCATTTAGGGATGGGTGGGAATGATAACCACTGAGACAGTTTTAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCATTTAGGGATGGGTGGGAATGATAACCACTGAGACAGTTTTAG  342

seq1  AACCCAGTTATCACAAAGTATAGTTGCACAGTGAGCTTGTCTTCCATCCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGTTATCACAAAGTATAGTTGCACAGTGAGCTTGTCTTCCATCCT  392

seq1  GTGCTCGTCTGATGCATTGACACCTCAGAGAGCTGAGTGAGAAAACGTCT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCGTCTGATGCATTGACACCTCAGAGAGCTGAGTGAGAAAACGTCT  442

seq1  TAAC-AAAGAGATCAGAGTATTGGGAGACACTGGGTGGGAATGCTGTCTC  490
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAAGAGATCAGAGTATTGGGAGACACTGGGTGGGAATGCTGTCTC  492

seq1  TGTGTCTGAGGAGGAAGAAGAGAATGGGAAGTAAGCCAGAGAGTCCATAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGAGGAGGAAGAAGAGAATGGGAAGTAAGCCAGAGAGTCCATAG  542

seq1  AAGCAGGCAGACGCTAGCTCAGGATGGGGGTCCACAGATCATGTGAAGAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCAGACGCTAGCTCAGGATGGGGGTCCACAGATCATGTGAAGAG  592

seq1  TGTGAATTGTCTTCTAATTATACAAAAGTCTATAACTGGAAGGTTTTAAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTGTCTTCTAATTATACAAAAGTCTATAACTGGAAGGTTTTAAG  642

seq1  TGGGAAGTGGCATGGTCAATTTACATAGCAGATATTCTGCTGGAAGCTTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTGGCATGGTCAATTTACATAGCAGATATTCTGCTGGAAGCTTC  692

seq1  GCACAGCCTTCATATCTTCACCAAACCTGCCTGCTAGAGTTCTTTCCCCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCCTTCATATCTTCACCAAACCTGCCTGCTAGAGTTCTTTCCCCA  742

seq1  CATTAAAGGTTATGCTTCCATCTGTTATGGTTGTCCATGAGCCGTTTGAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGGTTATGCTTCCATCTGTTATGGTTGTCCATGAGCCGTTTGAT  792

seq1  TACCTTAGGAGGAAAGGAAGAAAGACCTCCAACCCTGTCTCTTGGCACAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAGGAGGAAAGGAAGAAAGACCTCCAACCCTGTCTCTTGGCACAA  842

seq1  GACCCTGGTGGTTTTCTCGACTCAAGAATATGCGGAGAATAAGCCACTCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGGTGGTTTTCTCGACTCAAGAATATGCGGAGAATAAGCCACTCT  892

seq1  GAGCCTCTCAATACGCCACTCCTGTATCACAATTGCTGTGTAGTTCAGAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCTCAATACGCCACTCCTGTATCACAATTGCTGTGTAGTTCAGAG  942

seq1  TACCAACACCAGAAGGAAACAGGCAGGATCTATCCTTCCTGGAGGTGATA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACACCAGAAGGAAACAGGCAGGATCTATCCTTCCTGGAGGTGATA  992

seq1  TCAGTCTTGTATCCTGCTGAATGAAGGCTAGAAGATAGAATCAAATGCTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTGTATCCTGCTGAATGAAGGCTAGAAGATAGAATCAAATGCTC  1042

seq1  TCTTTGAGAGGTTAATGGAGGTTATCTCTCTGAGGGTACCAGACCTGTAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGAGGTTAATGGAGGTTATCTCTCTGAGGGTACCAGACCTGTAT  1092

seq1  TCCAGGCTTACAACCTCTAAGCCTGAGTGTCTTTAACTTGACAGACACAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTTACAACCTCTAAGCCTGAGTGTCTTTAACTTGACAGACACAT  1142

seq1  GACTGAAGGCTGCCTGCTATCTGAATCGAGTCAAGTCCTCTATTGTGAAT  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAGGCTGCCTGCTATCTGAATCGAGTCAAGTCCTCTATTGTGAAT  1192

seq1  TC  1192
      ||
seq2  TC  1194

seq1: chr11_71407905_71408716
seq2: B6Ng01-152M24.g_62_870

seq1  GAATTCTCTCCTTATCATTTAAATCTGCTCCGGTTTTCCTCTCATCTCCA  50
      ||||||||| |  |||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAC-AATCATTTAAATCTGCTCCGGTTTTCCTCTCATCTCCA  49

seq1  CCCTCACCACCCCACTTCTGAGATTAATTCTTCCCTTAAACAATGGAAGA  100
       || ||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CCACACCACCCCACTTCTGAGATTAATTCTTCCCTTAAACAATGGAAGA  98

seq1  TAGATGGATTTCTTGTTCCTTCAACTGATTAAAATCACTTCCTCTGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGATTTCTTGTTCCTTCAACTGATTAAAATCACTTCCTCTGTTGA  148

seq1  GAGTCCATTCATGCAGAAAGAGTGCTTCCGAATGCTAGCCCAGCATCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCATTCATGCAGAAAGAGTGCTTCCGAATGCTAGCCCAGCATCCAG  198

seq1  CTTCGTGCCCTAGAATTGCAGCCTGTGATGTTTAAACATACCGCTTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTGCCCTAGAATTGCAGCCTGTGATGTTTAAACATACCGCTTCCTC  248

seq1  CCTAGCACCATCACAGAGACTGCAAATGCCCTGCCAAGGTCTGGGATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACCATCACAGAGACTGCAAATGCCCTGCCAAGGTCTGGGATGCT  298

seq1  CCCCATTCAGCCACAGATGGAGGATGGACCAACTGCTGAGCCCCTCTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTCAGCCACAGATGGAGGATGGACCAACTGCTGAGCCCCTCTCGG  348

seq1  AGGCATAAGTCCCATTCTACAACATTCAGAAACAGGGCTGGGGCTTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAAGTCCCATTCTACAACATTCAGAAACAGGGCTGGGGCTTAGGA  398

seq1  GCAAGATGTCAATAAAACTAAGTCATAGAGTCCCAGTTGCACAGACAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATGTCAATAAAACTAAGTCATAGAGTCCCAGTTGCACAGACAGAA  448

seq1  TTTGAACCAAGGCCTGGTTCACTACAAAGCATATTCTAGCTGCTTGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACCAAGGCCTGGTTCACTACAAAGCATATTCTAGCTGCTTGATTC  498

seq1  CATGAATGCTTATTAAGTAACTGCATATATGCCAAGTGCTTGGATCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGCTTATTAAGTAACTGCATATATGCCAAGTGCTTGGATCCACA  548

seq1  AGTGTTAAGGCTCCCTGTTTCCATAAGCATCCAGAAATGATAAATATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAAGGCTCCCTGTTTCCATAAGCATCCAGAAATGATAAATATATA  598

seq1  TAGTGAATGAACCAGTCACGCCTTAGGCACAATAGCAGGTGCTCAGAGGG  650
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  TAGTGAATGAACCAGTCACGCCTTA-GCACTATAGCAGGTGCTCAGAGGG  647

seq1  AAAAAGACCTGAATGTTTATAAAGCACATTAGATTGATAAAGTGCCGCAT  700
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAAAGACCTGAATGTTTATAAAGCACATTAGATTTATAAAGTGCCGCAT  697

seq1  GCTGTTTGAGGTTGCCAAGAAGCTAGCTTTTGAATGGGGGTGGGGCGCTA  750
      ||||||||| |||||| ||||||||||||||||| ||||| |||||||||
seq2  GCTGTTTGA-GTTGCC-AGAAGCTAGCTTTTGAAGGGGGGGGGGGCGCTA  745

seq1  CCCCATTTCAGACCCGAGCACATTTCTTTCAGTGTCCTCCTAGGCCCCTA  800
      |||||||| |||||| |||||||||||||||||| |||||||||||||||
seq2  CCCCATTTTAGACCCCAGCACATTTCTTTCAGTGACCTCCTAGGCCCCTA  795

seq1  GCC--TGGGGATGT  812
      |||   ||||||||
seq2  GCCCTGGGGGATGT  809