BAC Information

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BAC

Clone NameB6Ng01-153D22
Chromosome11 (Build37)
Map Location 117,307,461 - 117,307,855
singlet/doubletsinglet
Overlap genenone
Upstream geneQrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423
Downstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153D22.bB6Ng01-153D22.g
ACCDH948614DH948615
length2461,114
definitionDH948614|Mus musculus domesticus DNA, BAC clone: B6Ng01-153D22, 5' end.DH948615|Mus musculus domesticus DNA, BAC clone: B6Ng01-153D22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagtaaatgagggaacaacatacgaatacttgtgggacacaat
caaaacagtgctgagaagaaagttcattgcacaaaagtgccttcataaag
aaattggagaattcttttattgactaaaagctatggaaaaaaaagaaaga
agaaggaggaggaggaaggagaaggagaaggaagaaggaagaaggaagaa
ggaagaaaggaagaaggaagaaggaagaaggaggaggaggaggagg
gaattcatgaaattcttaggcaaatggatagaactagaaaatatcatcct
gagtgaagtaacccaattgcaaaagaacacacatggtatgcactcactga
taagtggatactagcccaaaagctacaaataaccaggatataattaacag
cacacatgaagctaaagaagaaagaagaccaaaggctggatacttcggtc
cttcttaaaagaagaacaaaatactcacaggagcaaatatggatataaag
tgtagagcagagactaaaggaatgaccacccagagactgtaccacctggg
gattcatcccatatacaattaccagacctaggcactattgtggatgccaa
gaattgcatgctgaaaggagcctgatatggctgtctcctgagaggccctg
ccagagcattacaaatacagaggcagatgttcacagccaaccattgactg
agcttgtggtccccaatagaggacttagagacatgactgaatgagctgaa
gtggttaacaaccccatagggagaacaatatcaaccaaacagacaaccca
taactcccaggaactaagccatctctaaaggagtgcacatggctccacct
gcatatgtagcagaggattgccttgttattcatcaatggatggagatgtc
cttgatcctatgaatgctcaataaatgccccagtgtaggggaaccaagag
tggggtggcaggagtgggtagcttggtggaggaacaccctactagaagca
ggggagagaggatgtgatagagtgtttctgggagggagggaaaccaggaa
aggagatatatttgaaatgcaataaagaaaatatcccattaaaaagatgg
aagcaagaaaaaataagaaggaaaagaatgaggacattctgagtttgcag
acaatgatgaagctagaaaatatcctgagtaaggtagtactcaatccaaa
ggacatgcctggtatatcctcgctaatagtgatattagccataaacaaca
aaactaacaaaaaaaaccatcacatcacaaaactggaatcccaggatagt
ccagactccaagttatcagctaaaggggtccaggtgatgatgcctcatat
ccacctgggatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_117307461_117307855
seq2: B6Ng01-153D22.b_236_290 (reverse)

seq1  CCTCCTCCCTCTTCCCTTTCTTCTTTCCCTCCCTCCTCCTTCCTCCCTTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGTCTTTCCCTCACTCCCTTTTTCCTTCCATCTCTCCCTCCCCTCCCTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCCTCCCTTCCTCCCTTCCTCCCTTCTTCCCTTCCTTCCTTCCTTTCC  150
                 |||||  ||||||  || |||  | ||||||||  ||||
seq2  -----------CCTCC--TCCTCC--TCCTCC--TTCTTCCTTC--TTCC  31

seq1  TCCTCCCTTCCTCCCTTCTTCCTTCCTTCTCTCCCTCCCCTCCTTCCCTC  200
      | || |||| || |||||||||||                          
seq2  TTCTTCCTTTCTTCCTTCTTCCTT--------------------------  55

seq1  CTCCCTCCCTCCCTTCTCCCTTCCATCTCTCCCTCCCCTCCTTCTCTCCC  250
                                                        
seq2  --------------------------------------------------  55

seq1  TTCCTCTGTCTCATCTCCCCCCACCCCTTCTTCCTCACCTCTCTGACACT  300
                                                        
seq2  --------------------------------------------------  55

seq1  GAATCTTATCGTTTTCTTCTCTTTCCTCTTTCTTCTCCTTAACTTCTCCA  350
                                                        
seq2  --------------------------------------------------  55

seq1  TGAACAGTTTCTACTATGTGAGGGGCAATTTCTTCCTTCTTCCTT  395
                                                   
seq2  ---------------------------------------------  55