BAC Information

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BAC

Clone NameB6Ng01-154H05
Chromosome11 (Build37)
Map Location 115,293,586 - 115,294,649
singlet/doubletsinglet
Overlap genenone
Upstream geneRpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2
Downstream gene4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154H05.g
ACCDH949491
length1,087
definitionDH949491|Mus musculus domesticus DNA, BAC clone: B6Ng01-154H05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttaggagctcttgttcttctgctggggggagccaccttatcct
tgtgcttttctggaagacgacgactggtctggatctcttactgcctccat
gttcaagcatctgatgacccggctatggggtaagcaccacccgcatgtca
caaaactggctcactaaccaagcacatggaaatggttctcccacctgact
tttttgtaaatctccgtgtttttctttaaaattgacattgctgagtgggg
ggtgatcactggagccaggcattcacggccctcttgtcctggacggtggg
tcgttgcttccctagctttgcctagtgtggatttaacagtcctgtgctcc
aggcaacccatggggctcacagctttccttgaaccactctgcttctgaaa
acccggctagagagactggctgatcactgcagatagaggtccctgtcaca
tggcgatgtcccaagacctacatgcccctctgttctcaagactgtcaaat
ggaagtgtctttctgcgtttttctttgtcccaccccggtctctttcctct
ggtctccttggaggtgatggacccagcctacctgtcaagtgactccattt
ctcagttacttcttggctgtcataaacgtgtaggaagggagtgataatag
atgcaaaggacgtatgccatagggacacgcacaccttccggtaaggcctt
cgttccatgtctctgggaccatgccagtcactctcccatgcccttcgtaa
ctggctgatcatgtgtctgaacaaagtctgaagtgttgtgactttttgtc
aataaaataagcaacagcactgggccttggaccgtgtgtgcttttgctag
ctcctggctccagtggtcatcttgtgatgacctggctgctttcagcaaca
agtctcctgtacctgttctggagtacatcttagagccctgttagaactgc
cagagcgtgcagggccctcttcccttcctccctttcatctcattgagctg
aaagctcccaggagtgctgagatagagctggacgaatacggaagggcctc
ctgaataagtgaccaggtgcctatttttgtaccaggc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115293586_115294649
seq2: B6Ng01-154H05.g_97_1152

seq1  GGGGGAGCCCCCTTATCCCTCTGCTTTTCTGGAACCACACCAAGTGGTCT  50
      ||||||||| |||||||| | |||||||||||||  ||  | | ||||||
seq2  GGGGGAGCCACCTTATCCTTGTGCTTTTCTGGAA-GACGACGACTGGTCT  49

seq1  GGACGGATACACTGCCTCCATGTTC-AGCAAGGGGTGCAGAGGGTTAGGG  99
      |||    |  ||||||||||||||| ||||   | || |   || || ||
seq2  GGATCTCT-TACTGCCTCCATGTTCAAGCATCTGATG-ACCCGGCTATGG  97

seq1  GGCAGGCAGTACAGGCATGGGACAGACATGGGTCATCAGTCTTGCACCTG  149
      || | |||  ||  |||||  ||| |  ||| |||  |  |  |||| ||
seq2  GGTAAGCACCACCCGCATGTCACAAAACTGGCTCACTAACCAAGCACATG  147

seq1  GTAAGTGTTCTCGTCACTGAACATTCCAGAAAGCTCCAGCTAGTTCTGTA  199
      | ||  ||||||    ||||   ||    ||| ||||   |  |||| ||
seq2  GAAATGGTTCTCCCACCTGACTTTTTTGTAAATCTCCGTGTTTTTCTTTA  197

seq1  CAAAGGACACTGCTGAGCCTCAAGCCTAGACGC-AGAGCCAGGCATTCAC  248
       ||  |||| |||||||  |   |  |   | |  |||||||||||||||
seq2  AAATTGACATTGCTGAG--TGGGGGGTGATCACTGGAGCCAGGCATTCAC  245

seq1  GGCCCTCTTGTCCTGGACGGTGGGTCGTTGCTTCCCTAGCTTTGCCTAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCTTGTCCTGGACGGTGGGTCGTTGCTTCCCTAGCTTTGCCTAGT  295

seq1  GTGGTTTTAACAGTCCTGTGCTCCAGGCAACAGAGGGGGCTCACAGCTTT  348
      |||| ||||||||||||||||||||||||||  | |||||||||||||||
seq2  GTGGATTTAACAGTCCTGTGCTCCAGGCAACCCATGGGGCTCACAGCTTT  345

seq1  CCTTGAACCACTCTGCTTCTGAAAACCCGGCTAGAGAGTCTGGCTGATCA  398
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTTGAACCACTCTGCTTCTGAAAACCCGGCTAGAGAGACTGGCTGATCA  395

seq1  CTGCAGATAGAGGTCCCTGTCACATGGCGATGTCCCAAGACCTACATGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGATAGAGGTCCCTGTCACATGGCGATGTCCCAAGACCTACATGCC  445

seq1  CCTCTGTTCTCAGGACTGTCAAATGGAAGTGTCTTTCTGCATTTTTCTTT  498
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  CCTCTGTTCTCAAGACTGTCAAATGGAAGTGTCTTTCTGCGTTTTTCTTT  495

seq1  GTCCCACCCAGGTCTTTTTCCTCTGGTCTCCTTGGTGGTGATGGACCCAG  548
      ||||||||| ||||| ||||||||||||||||||| ||||||||||||||
seq2  GTCCCACCCCGGTCTCTTTCCTCTGGTCTCCTTGGAGGTGATGGACCCAG  545

seq1  CCTACCTGTCAAGTGACTCCATTTCTCAGTTACTTCTTGGCTGTCAGAAA  598
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTACCTGTCAAGTGACTCCATTTCTCAGTTACTTCTTGGCTGTCATAAA  595

seq1  GGTGTAGGAAGGGAGTGATAAGAGATGCAAAGGAAGTAGGCCAAAGGGAC  648
       |||||||||||||||||||| |||||||||||| ||| |||| ||||||
seq2  CGTGTAGGAAGGGAGTGATAATAGATGCAAAGGACGTATGCCATAGGGAC  645

seq1  ACCCACACCTTCCAGTAAGGCCTTCGTTCCATGTCTCTGGGACCATGCCA  698
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACGCACACCTTCCGGTAAGGCCTTCGTTCCATGTCTCTGGGACCATGCCA  695

seq1  GTCACTCTCCCATGCCCTTCGTAACTGGCTGATCATGTGTCTGAACAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCTCCCATGCCCTTCGTAACTGGCTGATCATGTGTCTGAACAAAG  745

seq1  TCTGAAGTGTTGTGACTTTTTGTCAATAAAGATAAGCAACAGCACTGGGC  798
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTGAAGTGTTGTGACTTTTTGTCAATAAA-ATAAGCAACAGCACTGGGC  794

seq1  CTTGGACCGTGTGTGCTTTTGCTAGCTCCTGGCTCCAGTGGTCATCTTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACCGTGTGTGCTTTTGCTAGCTCCTGGCTCCAGTGGTCATCTTGT  844

seq1  GATGACCTGGCTGCTTTCAGCAAACAAGTCTCCTGTACCTGTTCTGGAGT  898
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATGACCTGGCTGCTTTCAGC-AACAAGTCTCCTGTACCTGTTCTGGAGT  893

seq1  ACATCTTAGAGCCCTGTTAGAACTGCCAGAGGCGTGCAGGGCCCTCT--C  946
      |||||||||||||||||||||||||||||| ||||||||||||||||  |
seq2  ACATCTTAGAGCCCTGTTAGAACTGCCAGA-GCGTGCAGGGCCCTCTTCC  942

seq1  CCTCCTCCCTTTCATCTCATTGGAGCTGAAAAGCCCCCAGGAGTGCTGAG  996
      | ||||||||||||||||||| |||||| ||||| |||||||||||||| 
seq2  CTTCCTCCCTTTCATCTCATT-GAGCTG-AAAGCTCCCAGGAGTGCTGA-  989

seq1  GATAGAGCTGGACGAATAAGGGAGGGGCTCCTGAAGAGAAGTGACCAGGT  1046
      |||||||||||||||||| || |||| |||||||  | ||||||||||||
seq2  GATAGAGCTGGACGAATACGGAAGGGCCTCCTGA--ATAAGTGACCAGGT  1037

seq1  GCCTA-TTTTGTACCAGGC  1064
      ||||| |||||||||||||
seq2  GCCTATTTTTGTACCAGGC  1056