BAC Information

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BAC

Clone NameB6Ng01-154H08
Chromosome11 (Build37)
Map Location 94,519,405 - 94,695,165
singlet/doubletdoublet
Overlap geneMrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174
Upstream geneUtp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1
Downstream geneLOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154H08.bB6Ng01-154H08.g
ACCDH949496DH949497
length1,064790
definitionDH949496|Mus musculus domesticus DNA, BAC clone: B6Ng01-154H08, 5' end.DH949497|Mus musculus domesticus DNA, BAC clone: B6Ng01-154H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,694,102 - 94,695,165)(94,519,405 - 94,520,190)
sequence
gaattcccagttagcaacaatttcactcaagaggcacaagtgagccgggc
gtggtggtgcacacttttaatcccagcacttgggaggcagaggcaggcgg
atttctgagttcgaggccagcctgacctacaaagtgagttccaggacagc
cagggctatacagagaaaccctatcttgaaaaaaaaaaaaaaaaaaggag
gcacaagtgtgagtgttgttgggaagttttagcactgtctcaagcagggt
ccacctcagcagggggaaagaggcttcagatgggctccattactaagtac
aggggtgttggcaagtggcatactccctcctactcccttttctctcccta
gactctgtcaccagagattgcaagtagagagggaattctcaggggccaca
tcccaattgcacttggcttggctctggaaggttctgttgctaagcgctaa
aaagggccaagggatagtgagaaacagaggcagaaagggggagagagacc
agaggacaattccttagaggacaatgagcaagctagggtccctgagccac
aggaatgcagggaccaaagcagtcaaggaaatgggggcaaaacaaaaaca
aaaactgacttcttccactggcagtggataatagggcaaaacaggaggaa
aaacagaagggctcaaatgagtgcctttggagaggcagtgaaacactgaa
attggaaaacagactggcaggaaaggcgaggcttggaagctcactcagta
tgacaggcaaaggggaaccagaaaccagaggaagtctccaagaagctgcc
tgattcccaggagccaagttagagtgggacaggtaacaggagctatgaga
tgcacctcacacttacaccagagcctccaaggcgacctttcctgtgtccc
cagaccaggacagcggattcatccactaccttcattgccgcccttttccc
ctagcttggctgctacttgacagcacatgcatccacctgtccaaggggtt
attcttacaggggtcccatagctcttaggtcaagtcccagtccctgtgca
cacttcgggctgtc
gaattcaggcaaaacacctatgtacataaaattaaaatcgtaaacatcaa
agacaagcatagtgcatgcctttcaacccagcactcagaagtcagaggca
ggcagttctccgagttcaagaccagccgactcaacatactgagtttcagg
ccagccagaactacatagtgagacaccccctctacacctccttgcccacc
acggtgggggggggggcattggatgtgaattctttactaaaataatgaca
gtagaagctggtttgagctaagtatgctccaagttcttcatgatccttta
gatgaccctgtgaagtcctgagtttattcccaatctgtagacacaagaaa
gtaactcacctaaatcacagggcatttagcagtggaaagtttcattttgt
tcctcttgctggccttgaatgcttcatcctcctgccacagcctcctgaat
gctgggagcacagcagtgtgccaccactgctggctttagactcatacttt
taatcagagagacaccaaacagtatgggactggttgtgtaagattgccac
atatcgtttgtttgtttgtttttgagacaaggtcttgctatgtacctctg
gctggcctggaactttccatgtatcccaaactggtcttaacagtgcagcg
atcccctttctgagttggcaaacattacaggcatgtgccatcatgcatag
cttttagaatacagcatagaaatgcatagatttctccttttttattttcc
ctttaaaaaaagagtgatggattgttcaaacctggaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_94694102_94695165
seq2: B6Ng01-154H08.b_46_1109 (reverse)

seq1  GACAGCGCCGAGGTGTGCACAGGGACCTGGGACTTGACCTAAGAGGCTCT  50
      |||||| |||| ||||||||||||| |||||||||||||||||| ||| |
seq2  GACAGC-CCGAAGTGTGCACAGGGA-CTGGGACTTGACCTAAGA-GCTAT  47

seq1  GGGGCCCCTTGTAAGAAAAACCCC-TGGACAGGTGGATGCATGGTGACTG  99
      ||| |||| |||||||| |||||| ||||||||||||||||| ||| |||
seq2  GGGACCCC-TGTAAGAATAACCCCTTGGACAGGTGGATGCAT-GTG-CTG  94

seq1  TCAAGTGGCAGCCAAGCTAGGGGAAAAGGGC-GCAATG-AGGTAGTGGAT  147
      |||||| |||||||||||||||||||||||| |||||| |||||||||||
seq2  TCAAGTAGCAGCCAAGCTAGGGGAAAAGGGCGGCAATGAAGGTAGTGGAT  144

seq1  G-ATTCGCTGT-CTGGTCTGGGGACACAGG-AAGGTCGCCTTGGAGGCTC  194
      | || |||||| |||||||||||||||||| |||||||||||||||||||
seq2  GAATCCGCTGTCCTGGTCTGGGGACACAGGAAAGGTCGCCTTGGAGGCTC  194

seq1  TGGTGTTAGTGTGAGGTGCATCTCATAGCTCCTGTTACCTGT-CCACTCT  243
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGTGTAAGTGTGAGGTGCATCTCATAGCTCCTGTTACCTGTCCCACTCT  244

seq1  AACTTGGCTCCTGGGAATCAGGCAGCTTCTTGGAGACTTCCTCTGGTTTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGCTCCTGGGAATCAGGCAGCTTCTTGGAGACTTCCTCTGGTTTC  294

seq1  TGGTTCCCCTTTTCCCTGTCATACTGAGTGAGCTTCCAAGCCTCGCCTTT  343
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCCC-TTTGCCTGTCATACTGAGTGAGCTTCCAAGCCTCGCCTTT  343

seq1  CCTGCCAGTCTGTTTTCCAATTTCAGTGTTTCACTGCCTCTCCAAAGGCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGTCTGTTTTCCAATTTCAGTGTTTCACTGCCTCTCCAAAGGCA  393

seq1  CTCATTTGAGCCCTTCTGTTTTTCCTCCTGTTTTGCCCTATTATCCACTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGAGCCCTTCTGTTTTTCCTCCTGTTTTGCCCTATTATCCACTG  443

seq1  CCAGTGGAAGAAGTCAGTTTTTGTTTTTGTTTTGCCCCCATTTCCTTGAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGAAGAAGTCAGTTTTTGTTTTTGTTTTGCCCCCATTTCCTTGAC  493

seq1  TGCTTTGGTCCCTGCATTCCTGTGGCTCAGGGACCCTAGCTTGCTCATTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGTCCCTGCATTCCTGTGGCTCAGGGACCCTAGCTTGCTCATTG  543

seq1  TCCTCTAAGGAATTGTCCTCTGGTCTCTCTCCCCCTTTCTGCCTCTGTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAAGGAATTGTCCTCTGGTCTCTCTCCCCCTTTCTGCCTCTGTTT  593

seq1  CTCACTATCCCTTGGCCCTTTTTAGCGCTTAGCAACAGAACCTTCCAGAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATCCCTTGGCCCTTTTTAGCGCTTAGCAACAGAACCTTCCAGAG  643

seq1  CCAAGCCAAGTGCAATTGGGATGTGGCCCCTGAGAATTCCCTCTCTACTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCAAGTGCAATTGGGATGTGGCCCCTGAGAATTCCCTCTCTACTT  693

seq1  GCAATCTCTGGTGACAGAGTCTAGGGAGAGAAAAGGGAGTAGGAGGGAGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTCTGGTGACAGAGTCTAGGGAGAGAAAAGGGAGTAGGAGGGAGT  743

seq1  ATGCCACTTGCCAACACCCCTGTACTTAGTAATGGAGCCCATCTGAAGCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACTTGCCAACACCCCTGTACTTAGTAATGGAGCCCATCTGAAGCC  793

seq1  TCTTTCCCCCTGCTGAGGTGGACCCTGCTTGAGACAGTGCTAAAACTTCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCCCTGCTGAGGTGGACCCTGCTTGAGACAGTGCTAAAACTTCC  843

seq1  CAACAACACTCACACTTGTGCCTCCTTTTTTTTTTTTTTTTTTCAAGATA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACACTCACACTTGTGCCTCCTTTTTTTTTTTTTTTTTTCAAGATA  893

seq1  GGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGGTCAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGGTCAG  943

seq1  GCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGG  993

seq1  ATTAAAAGTGTGCACCACCACGCCCGGCTCACTTGTGCCTCTTGAGTGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGTGTGCACCACCACGCCCGGCTCACTTGTGCCTCTTGAGTGAA  1043

seq1  ATTGTTGCTAACTGGGAATTC  1064
      |||||||||||||||||||||
seq2  ATTGTTGCTAACTGGGAATTC  1064

seq1: chr11_94519405_94520190
seq2: B6Ng01-154H08.g_67_852

seq1  GAATTCAGGCAAAACACCTATGTACATAAAATTAAAATCGTAAACATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCAAAACACCTATGTACATAAAATTAAAATCGTAAACATCAA  50

seq1  AGACAAGCATAGTGCATGCCTTTCAACCCAGCACTCAGAAGTCAGAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGCATAGTGCATGCCTTTCAACCCAGCACTCAGAAGTCAGAGGCA  100

seq1  GGCAGTTCTCCGAGTTCAAGACCAGCCGACTCAACATACTGAGTTTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTCTCCGAGTTCAAGACCAGCCGACTCAACATACTGAGTTTCAGG  150

seq1  CCAGCCAGAACTACATAGTGAGACACCCCCTCTACACCTCCTTGCCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGAACTACATAGTGAGACACCCCCTCTACACCTCCTTGCCCACC  200

seq1  ACGGTGGGGGGGGGGGCATTGGATGTGAATTCTTTACTAAAATAATGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGGGGGGGGGGGCATTGGATGTGAATTCTTTACTAAAATAATGACA  250

seq1  GTAGAAGCTGGTTTGAGCTAAGTATGCTCCAAGTTCTTCATGATCCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGCTGGTTTGAGCTAAGTATGCTCCAAGTTCTTCATGATCCTTTA  300

seq1  GATGACCCTGTGAAGTCCTGAGTTTATTCCCAATCTGTAGACACAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCCTGTGAAGTCCTGAGTTTATTCCCAATCTGTAGACACAAGAAA  350

seq1  GTAACTCACCTAAATCACAGGGCATTTAGCAGTGGAAAGTTTCATTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCACCTAAATCACAGGGCATTTAGCAGTGGAAAGTTTCATTTTGT  400

seq1  TCCTCTTGCTGGCCTTGAATGCTTCATCCTCCTGCCACAGCCTCCTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTGCTGGCCTTGAATGCTTCATCCTCCTGCCACAGCCTCCTGAAT  450

seq1  GCTGGGAGCACAGCAGTGTGCCACCACTGCTGGCTTTAGACTCATACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGCACAGCAGTGTGCCACCACTGCTGGCTTTAGACTCATACTTT  500

seq1  TAATCAGAGAGACACCAAACAGTATGGGACTGGTTGTGTAAGATTGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGAGAGACACCAAACAGTATGGGACTGGTTGTGTAAGATTGCCAC  550

seq1  ATATCGTTTGTTTGTTTGTTTTTGAGACAAGGTCTTGCTATGTACCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGTTTGTTTGTTTGTTTTTGAGACAAGGTCTTGCTATGTACCTCTG  600

seq1  GCTGGCCTGGAACTTTCCATGTATCCCAAACTGGTCTTAACAGTGCAGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTGGAACTTTCCATGTATCCCAAACTGGTCTTAACAGTGCAGCG  650

seq1  ATCCCCTTTCTGAGTTTGGCAAACATTACAGGCATGTGCCATCATGCATA  700
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATCCCCTTTCTGAG-TTGGCAAACATTACAGGCATGTGCCATCATGCATA  699

seq1  GC-TTTAGAATACAGCATAGAAATGCATAGATTTCTCCTTTTTTATTTTT  749
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTTTTAGAATACAGCATAGAAATGCATAGATTTCTCCTTTTTTATTTTC  749

seq1  CCTTTAAAAAAAGAGTGTTGGATTGTTCAGACCTGGA  786
      ||||||||||||||||| ||||||||||| |||||||
seq2  CCTTTAAAAAAAGAGTGATGGATTGTTCAAACCTGGA  786