BAC Information

Click to search

BAC

Clone NameB6Ng01-155N01
Chromosome11 (Build37)
Map Location 94,176,080 - 94,338,687
singlet/doubletdoublet
Overlap gene3300001P08Rik, Ankrd40, Abcc3, Cacna1g
Upstream geneCar10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2
Downstream geneSpata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155N01.bB6Ng01-155N01.g
ACCDH950493DH950494
length839664
definitionDH950493|Mus musculus domesticus DNA, BAC clone: B6Ng01-155N01, 5' end.DH950494|Mus musculus domesticus DNA, BAC clone: B6Ng01-155N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,176,080 - 94,177,355)(94,338,024 - 94,338,687)
sequence
gaattccactaacctgagctccatctatctctcttagtgaaaaccaaatc
taaggtcaaagctgtgtgtatgttgccaaaatatatccacacatactact
tttcttaagtcaactgctgaggcttgaaatgaaatgacccccttagctca
tgtttgtgaatacttgtctccaagtgtagggagatagactgaaaacttta
gaaggctgaggctcataggaagtatatctctgaaggcaggctatgaggct
taacagcctggggtcatttcctgttctttatcttcttctggctggccagt
aaagaaaaagctgctgaccagcctcatgctccttctactatggaaaacaa
gactgtgtcccttctgcaactgtaagccaatctaaaccctttccttaatt
gcttttgttatggtattttatcacaagacagaaatcaaaccaatagaaca
gaaatgtagtattttctttcagtatgtatttattatattatgcctatatt
tgcagtttggtgatacaggacatcttcaaaacttataaaactgcctcaaa
atatggtaagttcctgaaaccactcagacacactaatggatgtatctccc
accccaagcaataaaaactgacagacctttcagaccagagatgagttgca
aataatactctcagacaagacaagcaacaaagatgactctgaccagccaa
gcagcctaaacaaagtaaaaaccagcccagctgcctgagtcactctccaa
tctgttgagctgcctgcacgcatttaatattgagtagcagatatcatgga
ctacactgagtttgtttggtttttttggggggaaagagg
gaattctcccaggaaggctgggctttccaacttataggctgaacatgatc
cttactggatatggagttgattttaaaatcccacaatgtctcttcctctt
ggcaagtgccactttaccctcctcttctatgccccctcttctgtcagcag
gaccgtattgaggcagctagggcttagggtcacaatgctcatagcttctt
gatttgggaggtatttatcatttcgtttccctgaactctagattccttaa
ctgagaaatggcagtttcaatgcccagagatatggggtgaccaaatggaa
tggttgcagcaccccaagtaaagagcaccacagatgggtgatctattttg
ttcttaaggggaccagcacgggagggacaaaggccacaaagctgcagggt
cctggaggggcttgctaagcaaggcacatatgagatactctagcaaactt
ggaagaaagtttggaccacataggtctaacttggtggataaacagaggca
caaataaaggattttcccctccatctcccacttcctggtttgaaatactt
tttttttttttaaccaagtgcccactatgtatcaaacactaggctaggac
atgccacagggaacacagcatagggagagagagagagagagagagagaga
gagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_94176080_94177355
seq2: B6Ng01-155N01.b_46_884

seq1  GAATTCCACTAACCTGAGCTCCATCTATCTCTCTTAGTGAAAACCAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTAACCTGAGCTCCATCTATCTCTCTTAGTGAAAACCAAATC  50

seq1  TAAGGTCAAAGCTGTGTGTATGTTGCCAAAATATATCCACACATACTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCAAAGCTGTGTGTATGTTGCCAAAATATATCCACACATACTACT  100

seq1  TTTCTTAAGTCAACTGCTGAGGCTTGAAATGAAATGACCCCCTTAGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAGTCAACTGCTGAGGCTTGAAATGAAATGACCCCCTTAGCTCA  150

seq1  TGTTTGTGAATACTTGTCTCCAAGTGTAGGGAGATAGACTGAAAACTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGAATACTTGTCTCCAAGTGTAGGGAGATAGACTGAAAACTTTA  200

seq1  GAAGGCTGAGGCTCATAGGAAGTATATCTCTGAAGGCAGGCTATGAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTGAGGCTCATAGGAAGTATATCTCTGAAGGCAGGCTATGAGGCT  250

seq1  TAACAGCCTGGGGTCATTTCCTGTTCTTTATCTTCTTCTGGCTGGCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCCTGGGGTCATTTCCTGTTCTTTATCTTCTTCTGGCTGGCCAGT  300

seq1  AAAGAAAAAGCTGCTGACCAGCCTCATGCTCCTTCTACTATGGAAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGCTGCTGACCAGCCTCATGCTCCTTCTACTATGGAAAACAA  350

seq1  GACTGTGTCCCTTCTGCAACTGTAAGCCAATCTAAACCCTTTCCTTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGTCCCTTCTGCAACTGTAAGCCAATCTAAACCCTTTCCTTAATT  400

seq1  GCTTTTGTTATGGTATTTTATCACAAGACAGAAATCAAACCAATAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTTATGGTATTTTATCACAAGACAGAAATCAAACCAATAGAACA  450

seq1  GAAATGTAGTATTTTCTTTCAGTATGTATTTATTATATTATGCCTATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAGTATTTTCTTTCAGTATGTATTTATTATATTATGCCTATATT  500

seq1  TGCAGTTTGGTGATACAGGACATCTTCAAAACTTATAAAACTGCCTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTGGTGATACAGGACATCTTCAAAACTTATAAAACTGCCTCAAA  550

seq1  ATATGGTAAGTTCCTGAAACCACTCAGACACACTAATGGATGTATCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTAAGTTCCTGAAACCACTCAGACACACTAATGGATGTATCTCCC  600

seq1  ACCCCAAGCAATAAAAACTGACAGACCTTTCAGACCAGAGATGAGTTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGCAATAAAAACTGACAGACCTTTCAGACCAGAGATGAGTTGCA  650

seq1  AATAATACTCTCAGACAAGACAAGCAACAAAGATGACTCTGACCAGCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACTCTCAGACAAGACAAGCAACAAAGATGACTCTGACCAGCCAA  700

seq1  GCAGCCTAAACAAAGTAAAAACCAGCCCAGCTGCCTGAGTCACTCTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTAAACAAAGTAAAAACCAGCCCAGCTGCCTGAGTCACTCTCCAA  750

seq1  TCTGTTGAGCTGCCTGCACGCATTTAATATTGAGTAGCAGATATCATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGAGCTGCCTGCACGCATTTAATATTGAGTAGCAGATATCATGGA  800

seq1  CTACACTGAGTTTGTTTGGTTTTTTTGGGGGGAGAGAGGGGGGACATGAC  850
      ||||||||||||||||||||||||||||||||| |||||           
seq2  CTACACTGAGTTTGTTTGGTTTTTTTGGGGGGAAAGAGG-----------  839

seq1  TATGCTATAGCACACATCTGGAGGTCAGAGAGCAACTTGTCTCTTTCCCA  900
                                                        
seq2  --------------------------------------------------  839

seq1  AATGAAGAAATGGCTCAGAGTAAGAATACTTACTTCCTGCTCCTGTGAAA  950
                                                        
seq2  --------------------------------------------------  839

seq1  GACCCAAATTTGGTTTCCAGAACCCATGTCAGATAGCGGCCCTTAATTCC  1000
                                                        
seq2  --------------------------------------------------  839

seq1  AGCTCCCTCCCAAGAATTCAATGCCCTCCTCTGCCCTCCCAGAGCACCTT  1050
                                                        
seq2  --------------------------------------------------  839

seq1  TACAGAGTGTAGCAATCGTTTTTAAAAACTTGTTTTGATATGGACAGTAT  1100
                                                        
seq2  --------------------------------------------------  839

seq1  CAATGACGTTCGTTACTATATTTGCTAACATCTCAAAAATTTTAGAAATG  1150
                                                        
seq2  --------------------------------------------------  839

seq1  TACATTTAGTTCAAGTCTCTTCATAAATTATTAACCTTTAATAAACAGGA  1200
                                                        
seq2  --------------------------------------------------  839

seq1  TATCCTTGAATTAAGGTATGTCAGAAAAACAACTGCAGTCAGTAGGATGT  1250
                                                        
seq2  --------------------------------------------------  839

seq1  GGGAGTGTACTCCTATATGCAAGAGG  1276
                                
seq2  --------------------------  839

seq1: chr11_94338024_94338687
seq2: B6Ng01-155N01.g_66_729 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTATGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTATGCTGT  50

seq1  GTTCCCTGTGGCATGTCCTAGCCTAGTGTTTGATACATAGTGGGCACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTGTGGCATGTCCTAGCCTAGTGTTTGATACATAGTGGGCACTTG  100

seq1  GTTAAAAAAAAAAAAAGTATTTCAAACCAGGAAGTGGGAGATGGAGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAAAAAAAAAGTATTTCAAACCAGGAAGTGGGAGATGGAGGGGA  150

seq1  AAATCCTTTATTTGTGCCTCTGTTTATCCACCAAGTTAGACCTATGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTTATTTGTGCCTCTGTTTATCCACCAAGTTAGACCTATGTGGT  200

seq1  CCAAACTTTCTTCCAAGTTTGCTAGAGTATCTCATATGTGCCTTGCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTTTCTTCCAAGTTTGCTAGAGTATCTCATATGTGCCTTGCTTAG  250

seq1  CAAGCCCCTCCAGGACCCTGCAGCTTTGTGGCCTTTGTCCCTCCCGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCCTCCAGGACCCTGCAGCTTTGTGGCCTTTGTCCCTCCCGTGCT  300

seq1  GGTCCCCTTAAGAACAAAATAGATCACCCATCTGTGGTGCTCTTTACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCTTAAGAACAAAATAGATCACCCATCTGTGGTGCTCTTTACTTG  350

seq1  GGGTGCTGCAACCATTCCATTTGGTCACCCCATATCTCTGGGCATTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGCAACCATTCCATTTGGTCACCCCATATCTCTGGGCATTGAAA  400

seq1  CTGCCATTTCTCAGTTAAGGAATCTAGAGTTCAGGGAAACGAAATGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTTCTCAGTTAAGGAATCTAGAGTTCAGGGAAACGAAATGATAA  450

seq1  ATACCTCCCAAATCAAGAAGCTATGAGCATTGTGACCCTAAGCCCTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCCCAAATCAAGAAGCTATGAGCATTGTGACCCTAAGCCCTAGCT  500

seq1  GCCTCAATACGGTCCTGCTGACAGAAGAGGGGGCATAGAAGAGGAGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAATACGGTCCTGCTGACAGAAGAGGGGGCATAGAAGAGGAGGGTA  550

seq1  AAGTGGCACTTGCCAAGAGGAAGAGACATTGTGGGATTTTAAAATCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCACTTGCCAAGAGGAAGAGACATTGTGGGATTTTAAAATCAACT  600

seq1  CCATATCCAGTAAGGATCATGTTCAGCCTATAAGTTGGAAAGCCCAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCCAGTAAGGATCATGTTCAGCCTATAAGTTGGAAAGCCCAGCCT  650

seq1  TCCTGGGAGAATTC  664
      ||||||||||||||
seq2  TCCTGGGAGAATTC  664