BAC Information

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BAC

Clone NameB6Ng01-157L11
Chromosome11 (Build37)
Map Location 19,203,029 - 19,357,587
singlet/doubletdoublet
Overlap geneLOC635455
Upstream geneLOC627716, LOC665796, Meis1
Downstream geneLOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157L11.bB6Ng01-157L11.g
ACCDH951875DH951876
length1,2171,091
definitionDH951875|Mus musculus domesticus DNA, BAC clone: B6Ng01-157L11, 5' end.DH951876|Mus musculus domesticus DNA, BAC clone: B6Ng01-157L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,203,029 - 19,204,455)(19,356,479 - 19,357,587)
sequence
gaattctgccagaaagtgcttagttgtcacaatcctgcaaatcaccaagg
ttgtgctcctttctaaggtacatgccctgcccagcatggaagtataaagg
ttggccaggccccttccaccttaggacaactctgaagggtcaccccagct
tcagaaagctgacagcattgactgaggctttgttaaattgcacttaagct
cagctttcccctctgtgaggctaactgctttccctccccccttctcacta
ctgcactccataagggacttctgcacacggatctctgaccagagcctgct
tctgaggacatccagctagtgactggagcatggaggacaatctagagagc
ttagtggtggtgctagctaatgggagcagctcagctgcagtgaacctagc
agcagaagctggggctaggataatagagaaagtcttgggaagagctggtg
gacttaggagatatttgggaagtaaaaagtaataggaccaggtgatggaa
tgggtacttggaagagggaggaaaaagcataagatggccagatggctcct
tggtctctggcttgtatggctggggagttagtaaagggtcaggcgggaag
gaaacgtccaaaattccaatgggtgctgcagagttactgacacccacaca
agtggggttcggttgaaggacactgagcagattgtttcatgggagatgtg
tggctcctaaaaagagttgtgaatgtggaaagacggacccagagggagag
aaggagatgcatgcccatgttctcgctagttctcacactgtctttccaca
tcttcaagagccctagctgcagagatcataactctataagagtgagcagc
cagttggggaaggggaatcgggacatttctgtccttacgcaaagaatcat
ccaaggtgtccagtcacaatagcctccactctgggaaagtctttgtttca
taagtattagtttataggactttatcacacacacacaacacaacacacaa
cacaacacacacacactctacacaaagcatgtatgcatggctgaagaaaa
ggcttggaagaattgaaaagcctgaatgagctgattttaaaattcagcat
tgaagtcattgagactgtcgtgtcctttcctgaagaagtccgggtgctta
ccacgaaaaggtgatcttttcctctctgaacactaccatgattttcctca
ctgtacaaacacattta
gaattcatcactggggtagagtgtggtcagtatgttatgtgtttcacagc
agccctgatctttatccattgttcttgctttacctatccctaagttagga
cagccaaaaacattccaaagtgtgactgcactctgccattgacaaaggac
ctcagccgagaactacctgcttactagtgctccctgggttttaacatcat
taaagctgttttggattttgtcggtaccctcctgatcaactgaacgatga
gcttcatgttgtctaggaggacgtttttaaagcagcactcctgcaaacac
acacgtacaagaaagtgcttgcagagtttacctttatacctggcgcagta
tcatgggagatttctttaaagcattttaagaagtaaaacattagttattc
cccaacagcaatagagaggatgatatggctgaacgcatgtcatataatca
gatttttaaaactctaactcatcaattgatgatgataatatacttgggta
ctgcccatgttgttaacctcagcaatcaaaatgaggtaattatactaatt
acaagcgtctcaaaaccctactcagtgtccttgtgcatgagaggtaagct
gtaccacagccatgttgtaaggctccaaccccctgtaaaggacccagaag
cttattctcgggccagtagtcactgtgccagggaaaggagaggtagaggt
gagtccatgggcagactaatggcctttcattcaggaatggctatagatgc
tgcaagacttgcaagtggctggctgggcctgatggtctggaaccagtgat
ataaggagtcctgaagcccagtgagctgtgactgtacaagtgttctggat
gacatagttggtcatccagagcagctgaactgctgagaggacattaagaa
agactcaggaaggtcaccattacttggagactctctattgataactgagg
aacatttcaaggaactctgggagtcatatttatgcccaaatgtctgatct
acttagccggctaaggagtagatgtgtgactgtgagtctgtctatgaaaa
gagaagctagttctgaccggaaaggtgtgccttcaaggcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_19203029_19204455
seq2: B6Ng01-157L11.b_49_1265

seq1  GAATTCTGCCAGAAAGTGCTTAGTTGTCACAATCCTGCAAATCACCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCAGAAAGTGCTTAGTTGTCACAATCCTGCAAATCACCAAGG  50

seq1  TTGTGCTCCTTTCTAAGGTACATGCCCTGCCCAGCATGGAAGTATAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTCCTTTCTAAGGTACATGCCCTGCCCAGCATGGAAGTATAAAGG  100

seq1  TTGGCCAGGCCCCTTCCACCTTAGGACAACTCTGAAGGGTCACCCCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCAGGCCCCTTCCACCTTAGGACAACTCTGAAGGGTCACCCCAGCT  150

seq1  TCAGAAAGCTGACAGCATTGACTGAGGCTTTGTTAAATTGCACTTAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGCTGACAGCATTGACTGAGGCTTTGTTAAATTGCACTTAAGCT  200

seq1  CAGCTTTCCCCTCTGTGAGGCTAACTGCTTTCCCTCCCCCCTTCTCACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTCCCCTCTGTGAGGCTAACTGCTTTCCCTCCCCCCTTCTCACTA  250

seq1  CTGCACTCCATAAGGGACTTCTGCACACGGATCTCTGACCAGAGCCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTCCATAAGGGACTTCTGCACACGGATCTCTGACCAGAGCCTGCT  300

seq1  TCTGAGGACATCCAGCTAGTGACTGGAGCATGGAGGACAATCTAGAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGACATCCAGCTAGTGACTGGAGCATGGAGGACAATCTAGAGAGC  350

seq1  TTAGTGGTGGTGCTAGCTAATGGGAGCAGCTCAGCTGCAGTGAACCTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGTGGTGCTAGCTAATGGGAGCAGCTCAGCTGCAGTGAACCTAGC  400

seq1  AGCAGAAGCTGGGGCTAGGATAATAGAGAAAGTCTTGGGAAGAGCTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGCTGGGGCTAGGATAATAGAGAAAGTCTTGGGAAGAGCTGGTG  450

seq1  GACTTAGGAGATATTTGGGAAGTAAAAAGTAATAGGACCAGGTGATGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGGAGATATTTGGGAAGTAAAAAGTAATAGGACCAGGTGATGGAA  500

seq1  TGGGTACTTGGAAGAGGGAGGAAAAAGCATAAGATGGCCAGATGGCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACTTGGAAGAGGGAGGAAAAAGCATAAGATGGCCAGATGGCTCCT  550

seq1  TGGTCTCTGGCTTGTATGGCTGGGGAGTTAGTAAAGGGTCAGGCGGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTGGCTTGTATGGCTGGGGAGTTAGTAAAGGGTCAGGCGGGAAG  600

seq1  GAAACGTCCAAAATTCCAATGGGTGCTGCAGAGTTACTGACACCCACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGTCCAAAATTCCAATGGGTGCTGCAGAGTTACTGACACCCACACA  650

seq1  AGTGGGGTTCGGTTGAAGGACACTGAGCAGATTGTTTCATGGGAGATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGTTCGGTTGAAGGACACTGAGCAGATTGTTTCATGGGAGATGTG  700

seq1  TGGCTCCTAAAAAGAGTTGTGAATGTGGAAAGACGGACCCAGAGGGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTAAAAAGAGTTGTGAATGTGGAAAGACGGACCCAGAGGGAGAG  750

seq1  AAGGAGATGCATGCCCATGTTCTCGCTAGTTCTCACACTGTCTTTCCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATGCATGCCCATGTTCTCGCTAGTTCTCACACTGTCTTTCCACA  800

seq1  TCTTCAAGAGCCCTAGCTGCAGAGATCATAACTCTATAAGAGTGAGCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAGAGCCCTAGCTGCAGAGATCATAACTCTATAAGAGTGAGCAGC  850

seq1  CAGTTGGGGAAGGGGAATCGGAACATTTCTGTCCTTACGCAAATGAATCA  900
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  CAGTTGGGGAAGGGGAATCGGGACATTTCTGTCCTTACGCAAA-GAATCA  899

seq1  TCCAAGGTGTCCAGTCACAATAGCCTCCACTCTAGGGAAAGTCTTTGTTT  950
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  TCCAAGGTGTCCAGTCACAATAGCCTCCACTCT-GGGAAAGTCTTTG-TT  947

seq1  TCATAAAAGTATTAGTTTATAGAACTTTATACAACACACACACACACACA  1000
      ||||  |||||||||||||||| |||||||    |||||||||||| |||
seq2  TCAT--AAGTATTAGTTTATAGGACTTTAT----CACACACACACA-ACA  990

seq1  CACACACACACACACACACACACACAC-CCCTACACGAAGGCATGTATGC  1049
      || ||||||| ||||| |||||||||| | |||||| || ||||||||||
seq2  CA-ACACACA-ACACA-ACACACACACACTCTACAC-AAAGCATGTATGC  1036

seq1  AATGGCTGAAGGAAGAAAGGCTTGGAAGGAGTTGAAAGAGCATGAAGTGA  1099
       ||||||||||    |||||||||||| || |||||| ||| |||| |||
seq2  -ATGGCTGAAG---AAAAGGCTTGGAA-GAATTGAAA-AGCCTGAA-TGA  1079

seq1  GCCTGATTTATAAATCCAGCATTGGATGCTCATTGAGATCTGCTCTGCCC  1149
      | |||||||  |||| |||||||| |   ||||||||| |||   || ||
seq2  G-CTGATTTTAAAATTCAGCATTGAA--GTCATTGAGA-CTGTCGTGTCC  1125

seq1  CATTCCATGAGGAACGTTCCCTGGTGCTTTACCCCACAGAACGTCGATCC  1199
        || | ||| ||| ||  || |||||||    ||||  || |  |||| 
seq2  --TTTCCTGAAGAA-GT--CCGGGTGCTT---ACCACGAAAAGGTGATCT  1167

seq1  TTTCCCCTCCTCTGAACCACCTCTACCCAATGCATTTTTCCCTTCACTCG  1249
      |||||    |||||||    | |||||  ||| |||||   | |||||  
seq2  TTTCC---TCTCTGAA----CACTACC--ATG-ATTTT---CCTCACT--  1202

seq1  GAAACAAAACACATTT-CTTTAAATGGTTCATGCAGGCCATTCTAAGGAT  1298
      | |   ||||||||||                                  
seq2  GTA--CAAACACATTTA---------------------------------  1217

seq1  CTTTGTAAAGTTCTCTGCTCCTGCTGAAACTGTTTTCCCCAATCAACTCC  1348
                                                        
seq2  --------------------------------------------------  1217

seq1  AAATCACAGACTATGTCCCGCAAAATTGCTAGCTCATCTCTAAAAGAGAC  1398
                                                        
seq2  --------------------------------------------------  1217

seq1  TGTACCAGGTAAGGTGCTAAACACATTTA  1427
                                   
seq2  -----------------------------  1217

seq1: chr11_19356479_19357587
seq2: B6Ng01-157L11.g_67_1157 (reverse)

seq1  GCGCCTTTGATGGCACACCTTTTCCGGTTCAGTAACTAGCTTCTCTTTTC  50
      ||||| |||| |||||||| ||||||| |||| |||||||||||||||| 
seq2  GCGCC-TTGAAGGCACACC-TTTCCGG-TCAG-AACTAGCTTCTCTTTT-  45

seq1  CATGACCAGACTCACAGTCACCACATCTTACTCCCTTAGCCTGGCTAAGT  100
      |||   |||||||||||||| |||||| |||| |||||||| ||||||| 
seq2  CATAGACAGACTCACAGTCA-CACATC-TACT-CCTTAGCC-GGCTAAG-  90

seq1  TAGATCAAGACATTTGGGCATAAAATATGGCTCCCAGGAGTTCCTTGAAA  150
      |||||| |||||||||||||| ||||||| |||||| |||||||||||||
seq2  TAGATC-AGACATTTGGGCAT-AAATATGACTCCCA-GAGTTCCTTGAAA  137

seq1  TGTTTCCTCAGTTTATCAATAGAGAGGTCTCCAAGTAATGGTGACCTTCC  200
      || |||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  TG-TTCCTCAG-TTATCAATAGAGA-GTCTCCAAGTAATGGTGACCTTCC  184

seq1  TGAGTCTTTCTTTAATGTCCTCTCAGCAGTTCAGCTGCTCTGGATGACCA  250
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTTC-TTAATGTCCTCTCAGCAGTTCAGCTGCTCTGGATGACCA  233

seq1  ACTATGTCATCCAGAACACTTTGTACAGTCACAGCTCACTGGGCTTCAGG  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTATGTCATCCAGAACAC-TTGTACAGTCACAGCTCACTGGGCTTCAGG  282

seq1  GCTCCTTATATCACTGGTTCCAGACCATCAGGCCCAGCCAGCCACTTGCA  350
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTATATCACTGGTTCCAGACCATCAGGCCCAGCCAGCCACTTGCA  332

seq1  AGTCTTGCAGCATCTATAGCCATTCCTGAATGAAAGGCCATTAGTCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGCAGCATCTATAGCCATTCCTGAATGAAAGGCCATTAGTCTGCC  382

seq1  CATGGACTCACCTCTACCTCTCCTTTCCCTGGCACAGTGACTACTGGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACTCACCTCTACCTCTCCTTTCCCTGGCACAGTGACTACTGGCCC  432

seq1  GAGAATAAGCTTCTGGGTCCTTTACAGGGGGTTGGAGCCTTACAACATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAAGCTTCTGGGTCCTTTACAGGGGGTTGGAGCCTTACAACATGG  482

seq1  CTGTGGTACAGCTTACCTCTCATGCACAAGGACACTGAGTAGGGTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTACAGCTTACCTCTCATGCACAAGGACACTGAGTAGGGTTTTGA  532

seq1  GACGCTTGTAATTAGTATAATTACCTCATTTTGATTGCTGAGGTTAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTTGTAATTAGTATAATTACCTCATTTTGATTGCTGAGGTTAACAA  582

seq1  CATGGGCAGTACCCAAGTATATTATCATCATCAATTGATGAGTTAGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCAGTACCCAAGTATATTATCATCATCAATTGATGAGTTAGAGTT  632

seq1  TTAAAAATCTGATTATATGACATGCGTTCAGCCATATCATCCTCTCTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATCTGATTATATGACATGCGTTCAGCCATATCATCCTCTCTATT  682

seq1  GCTGTTGGGGAATAACTAATGTTTTACTTCTTAAAATGCTTTAAAGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGGGGAATAACTAATGTTTTACTTCTTAAAATGCTTTAAAGAAAT  732

seq1  CTCCCATGATACTGCGCCAGGTATAAAGGTAAACTCTGCAAGCACTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATGATACTGCGCCAGGTATAAAGGTAAACTCTGCAAGCACTTTCT  782

seq1  TGTACGTGTGTGTTTGCAGGAGTGCTGCTTTAAAAACGTCCTCCTAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGTGTGTGTTTGCAGGAGTGCTGCTTTAAAAACGTCCTCCTAGACA  832

seq1  ACATGAAGCTCATCGTTCAGTTGATCAGGAGGGTACCGACAAAATCCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAGCTCATCGTTCAGTTGATCAGGAGGGTACCGACAAAATCCAAA  882

seq1  ACAGCTTTAATGATGTTAAAACCCAGGGAGCACTAGTAAGCAGGTAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTAATGATGTTAAAACCCAGGGAGCACTAGTAAGCAGGTAGTTC  932

seq1  TCGGCTGAGGTCCTTTGTCAATGGCAGAGTGCAGTCACACTTTGGAATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTGAGGTCCTTTGTCAATGGCAGAGTGCAGTCACACTTTGGAATGT  982

seq1  TTTTGGCTGTCCTAACTTAGGGATAGGTAAAGCAAGAACAATGGATAAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCTGTCCTAACTTAGGGATAGGTAAAGCAAGAACAATGGATAAAG  1032

seq1  ATCAGGGCTGCTGTGAAACACATAACATACTGACCACACTCTACCCCAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGCTGCTGTGAAACACATAACATACTGACCACACTCTACCCCAGT  1082

seq1  GATGAATTC  1109
      |||||||||
seq2  GATGAATTC  1091