BAC Information

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BAC

Clone NameB6Ng01-160B18
Chromosome11 (Build37)
Map Location 52,692,166 - 52,847,700
singlet/doubletdoublet
Overlap geneFstl4
Upstream geneD11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream geneLOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160B18.bB6Ng01-160B18.g
ACCDH953572DH953573
length1,161763
definitionDH953572|Mus musculus domesticus DNA, BAC clone: B6Ng01-160B18, 5' end.DH953573|Mus musculus domesticus DNA, BAC clone: B6Ng01-160B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,692,166 - 52,693,333)(52,846,942 - 52,847,700)
sequence
gaattcattctttggaataagagagaaatttattctaaaatatcttcatc
ccgaaggaaataaaaaccctgcttaatggcaaaggctctcccttgggctt
tgattaagcagatttgcaaggctgggctttctgtacctgttgtttgtcat
tggggcccagttagactcggggaagaaaatcttgtctcaggcacctaatg
tgacaggtaccttctgggacccagatgtctgcctgcaggaacctgctgcc
gccacaggtgtgctgggaggacacatgtgtccagtgagcgacctgctggt
cactgtggaatgaaggcaggacagattcgtctgttccttagcctcgatgt
gatgcctcacataatactctttttttttctgattataaagacaaaaccct
ttcttataaaaaactgaattcataacttcatagacagaggaagacagaac
tagttgtgggacagtgaagatggcttagtggataaaaatgctaccatgca
agtgtgagatcctgagtttgaatccccagaacctatgaaaaagccaagca
cacagcgtgagcttctgtaatccccacacttctatggggagatgggaggc
agaaacaggtgcgtccctgaaagtgcctgagccagctggcctggagtgtg
aggcagaaaacaaggggaccctgtcttaaccagagggatggcaagttctg
acaccttgcttgtcctctgacctccatacaaatgctatggcatgtagtcc
catccatacgtatgaatacacacacacacacacacacacacacacacaca
ccctctcctccctcttgtcttttccttggtatcccatcaacaagacttag
tgtttgttgccgttctatctgtccccggcctagtctaataaacatttata
ttgtttccacaactgaaatcttttcttgtatatttccatctggacttcag
gtttttgtacttattcctatatttcttatgtgacctctggcagagaaaag
tcatcgtagcaccacacaagcaacagcttggcttacagtgccatgcctct
cttcatccaagagagtgatcctactcatggctaggcattgctaacttggt
ttcagcttcaaggccagtctacaactgctgtaactctggtttagagggag
ccgtgatgccc
gaattcctgaccttcctgtctctctagtgctgagactagagactactgat
catccctgaggtcaagtgtttctggaggcatgaggtgggttgtgagtaaa
gcctgttgactcaaggcctggaacctcggggtgggggtggggatcaccga
gcgtgtttctacttgacatcgaatcctctagtcaaggagacatcagctgt
gccgtgccaagggcctggctgcacactggcccttagttaaggtcctcctg
tccagacttgaggtccctgtggggcttatcccattagcagacgtgggaaa
ttgggcagttatgaggctagtgtctaaatgaaccctgaagaagatgctcc
attttttttttttttttttgccacttaattgaatttgtggcagtaaatct
ttgagtcttctcttagcattcagaatttcaatttactccatggatttttg
tgttcaacccccagtgaaaatgagcatttgtgccgaaaagctttttatca
acccttctcaaaatgtcagtccccttatctccaaagcccactgcaatctt
ggggcctatggttttaaaaaagagctcccatgtaccgcctctccctccca
gctcctggcggtgctttatcatggcttaatcagagtcgtttctgacattc
atccctctcctaatcttctcagatttcttctaaagtgaggttttcacctt
caaatccagcttttgtggacccattaatattcccctgaagccattgccca
ccgacaaggactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_52692166_52693333
seq2: B6Ng01-160B18.b_47_1207

seq1  GAATTCATTCTTTGGAATAAGAGAGAAATTTATTCTAAAATATCTTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTTGGAATAAGAGAGAAATTTATTCTAAAATATCTTCATC  50

seq1  CCGAAGGAAATAAAAACCCTGCTTAATGGCAAAGGCTCTCCCTTGGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGGAAATAAAAACCCTGCTTAATGGCAAAGGCTCTCCCTTGGGCTT  100

seq1  TGATTAAGCAGATTTGCAAGGCTGGGCTTTCTGTACCTGTTGTTTGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAGCAGATTTGCAAGGCTGGGCTTTCTGTACCTGTTGTTTGTCAT  150

seq1  TGGGGCCCAGTTAGACTCGGGGAAGAAAATCTTGTCTCAGGCACCTAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCCAGTTAGACTCGGGGAAGAAAATCTTGTCTCAGGCACCTAATG  200

seq1  TGACAGGTACCTTCTGGGACCCAGATGTCTGCCTGCAGGAACCTGCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGTACCTTCTGGGACCCAGATGTCTGCCTGCAGGAACCTGCTGCC  250

seq1  GCCACAGGTGTGCTGGGAGGACACATGTGTCCAGTGAGCGACCTGCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGGTGTGCTGGGAGGACACATGTGTCCAGTGAGCGACCTGCTGGT  300

seq1  CACTGTGGAATGAAGGCAGGACAGATTCGTCTGTTCCTTAGCCTCGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGAATGAAGGCAGGACAGATTCGTCTGTTCCTTAGCCTCGATGT  350

seq1  GATGCCTCACATAATACTCTTTTTTTTTCTGATTATAAAGACAAAACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTCACATAATACTCTTTTTTTTTCTGATTATAAAGACAAAACCCT  400

seq1  TTCTTATAAAAAACTGAATTCATAACTTCATAGACAGAGGAAGACAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAAAAAACTGAATTCATAACTTCATAGACAGAGGAAGACAGAAC  450

seq1  TAGTTGTGGGACAGTGAAGATGGCTTAGTGGATAAAAATGCTACCATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTGGGACAGTGAAGATGGCTTAGTGGATAAAAATGCTACCATGCA  500

seq1  AGTGTGAGATCCTGAGTTTGAATCCCCAGAACCTATGAAAAAGCCAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAGATCCTGAGTTTGAATCCCCAGAACCTATGAAAAAGCCAAGCA  550

seq1  CACAGCGTGAGCTTCTGTAATCCCCACACTTCTATGGGGAGATGGGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCGTGAGCTTCTGTAATCCCCACACTTCTATGGGGAGATGGGAGGC  600

seq1  AGAAACAGGTGCGTCCCTGAAAGTGCCTGAGCCAGCTGGCCTGGAGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGGTGCGTCCCTGAAAGTGCCTGAGCCAGCTGGCCTGGAGTGTG  650

seq1  AGGCAGAAAACAAGGGGACCCTGTCTTAACCAGAGGGATGGCAAGTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAAACAAGGGGACCCTGTCTTAACCAGAGGGATGGCAAGTTCTG  700

seq1  ACACCTTGCTTGTCCTCTGACCTCCATACAAATGCTATGGCATGTAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGCTTGTCCTCTGACCTCCATACAAATGCTATGGCATGTAGTCC  750

seq1  CATCCATACGTATGAATACACACACACACACACACACACACACACACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATACGTATGAATACACACACACACACACACACACACACACACACA  800

seq1  CCCTCTCCTCCCTCTTGTCTTTTCCTTGGTATCCCATCAACAAGACTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCTCCCTCTTGTCTTTTCCTTGGTATCCCATCAACAAGACTTAG  850

seq1  TGTTTGTTGCCGTTCTATCTGTCCCCGGCCTAGTCTAATAAACATTTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTGCCGTTCTATCTGTCCCCGGCCTAGTCTAATAAACATTTATA  900

seq1  TTGTTTCCACAACTGAAATCTTT--CTGTATATTTCCATCT-GACTTCAG  947
      |||||||||||||||||||||||   ||||||||||||||| ||||||||
seq2  TTGTTTCCACAACTGAAATCTTTTCTTGTATATTTCCATCTGGACTTCAG  950

seq1  G-TTTTGTACTTAATTCTATATTTCTTATGTGACCTCT-GCAGAGAAAAG  995
      | ||||||||||| | |||||||||||||||||||||| |||||||||||
seq2  GTTTTTGTACTTATTCCTATATTTCTTATGTGACCTCTGGCAGAGAAAAG  1000

seq1  TCATCGTAGCACCACAACAAAGCAACAGCTTGGCTTACAGTGCCATGCCC  1045
      ||||||||||||||||   |||||||||||||||||||||||||||| ||
seq2  TCATCGTAGCACCACA--CAAGCAACAGCTTGGCTTACAGTGCCATG-CC  1047

seq1  TCTTTCAATCCAAGAGAAGGGGATCCCACTCAGTGGCTAAGGGCATTTGC  1095
      ||| |  ||||||||||  | ||||| ||||| ||||||  |||| ||||
seq2  TCTCTTCATCCAAGAGA--GTGATCCTACTCA-TGGCTA--GGCA-TTGC  1091

seq1  TAGACTTGGTTTCCAGCTTCCACAGGCCAGTTCACAACTGCCTGTAACTC  1145
      || ||||||||| |||||||   ||||||||  ||||||| |||||||||
seq2  TA-ACTTGGTTT-CAGCTTC--AAGGCCAGTCTACAACTG-CTGTAACTC  1136

seq1  TGGTTTTAGA-GGAGC--TGATGCCC  1168
      ||| |||||| |||||  ||||||||
seq2  TGG-TTTAGAGGGAGCCGTGATGCCC  1161

seq1: chr11_52846942_52847700
seq2: B6Ng01-160B18.g_71_833 (reverse)

seq1  AAGTCCTTGTCTGTGGGCATTGGCTTCA-GGGAATATTAATGGGTCCAC-  48
      ||||||||||| ||||||| |||||||| |||||||||||||||||||| 
seq2  AAGTCCTTGTCGGTGGGCAATGGCTTCAGGGGAATATTAATGGGTCCACA  50

seq1  AAAGCTGGATTTGAA-GTGGAAAACTCACCTTAAGAAGAAATCTGAGAAG  97
      ||||||||||||||| ||| ||| |||| ||| |||||||||||||||||
seq2  AAAGCTGGATTTGAAGGTGAAAACCTCA-CTTTAGAAGAAATCTGAGAAG  99

seq1  ATTAGGAGAGGGATGAATGTCAGAAACGACTCTGATTAAGCCATGATAAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAGAGGGATGAATGTCAGAAACGACTCTGATTAAGCCATGATAAA  149

seq1  GCA-CGCCAGGAGCTGGGAGGGAGAGGCGGTACATGGGAGCTC-TTTTTA  195
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCACCGCCAGGAGCTGGGAGGGAGAGGCGGTACATGGGAGCTCTTTTTTA  199

seq1  AAACCATAGGCCCCAAGATTGCAGTGGGCTTTGGAGATAAGGGGACTGAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATAGGCCCCAAGATTGCAGTGGGCTTTGGAGATAAGGGGACTGAC  249

seq1  ATTTTGAGAAGGGTTGATTAAAAGCTTTTCGGCACAAATGCTCATTTTCA  295
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTTTGAGAAGGGTTGATAAAAAGCTTTTCGGCACAAATGCTCATTTTCA  299

seq1  CTGGGGGTTGAACACAAAAATCCATGGAGTAAATTGAAATTCTGAATGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGTTGAACACAAAAATCCATGGAGTAAATTGAAATTCTGAATGCT  349

seq1  AAGAGAAGACTCAAAGATTTACTGCCACAAATTCAATTAAGTGGCAAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGACTCAAAGATTTACTGCCACAAATTCAATTAAGTGGCAAAAA  399

seq1  AAAAAAAAAAAAATGGAGCATCTTCTTCAGGGTTCATTTAGACACTAGCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAATGGAGCATCTTCTTCAGGGTTCATTTAGACACTAGCC  449

seq1  TCATAACTGCCCAATTTCCCACGTCTGCTAATGGGATAAGCCCCACAGGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACTGCCCAATTTCCCACGTCTGCTAATGGGATAAGCCCCACAGGG  499

seq1  ACCTCAAGTCTGGACAGGAGGACCTTAACTAAGGGCCAGTGTGCAGCCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAGTCTGGACAGGAGGACCTTAACTAAGGGCCAGTGTGCAGCCAG  549

seq1  GCCCTTGGCACGGCACAGCTGATGTCTCCTTGACTAGAGGATTCGATGTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGGCACGGCACAGCTGATGTCTCCTTGACTAGAGGATTCGATGTC  599

seq1  AAGTAGAAACACGCTCGGTGATCCCCACCCCCACCCCGAGGTTCCAGGCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAACACGCTCGGTGATCCCCACCCCCACCCCGAGGTTCCAGGCC  649

seq1  TTGAGTCAACAGGCTTTACTCACAACCCACCTCATGCCTCCAGAAACACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCAACAGGCTTTACTCACAACCCACCTCATGCCTCCAGAAACACT  699

seq1  TGACCTCAGGGATGATCAGTAGTCTCTAGTCTCAGCACTAGAGAGACAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCAGGGATGATCAGTAGTCTCTAGTCTCAGCACTAGAGAGACAGG  749

seq1  AAGGTCAGGAATTC  759
      ||||||||||||||
seq2  AAGGTCAGGAATTC  763