BAC Information

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BAC

Clone NameB6Ng01-160C12
Chromosome11 (Build37)
Map Location 83,152,374 - 83,302,165
singlet/doubletdoublet
Overlap geneAp2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15
Upstream geneTmem132e, Cct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12
Downstream geneOTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160C12.bB6Ng01-160C12.g
ACCDH953608DH953609
length1,1881,102
definitionDH953608|Mus musculus domesticus DNA, BAC clone: B6Ng01-160C12, 5' end.DH953609|Mus musculus domesticus DNA, BAC clone: B6Ng01-160C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,300,998 - 83,302,165)(83,152,374 - 83,153,474)
sequence
gaattcaatgtgcttaagaattacatctactagccaggcggtggtggtgc
acgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagt
ttgaggccagcctggtctacaaagtgagttccaggacagcaagacagcaa
gggctatacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaa
aaagaattacatctacatgaaattccatttttctaaaaaataagacagca
aataaaattacttaagctaaactaaaaatctggattaataaactaaagac
agaattctaattttatttccttcacctcaaagatattaaaaataattcaa
gcacaggtcaggcctgcaaaaccacagccactacacacttttcaaaccaa
gaaaagatatccagtaatgatttttactcattgactctattatcaatatg
gctaggaatataactcagtgatgaaatgtttgccctacacatagaaagat
catggaattcaattcctatcatcgccaaaataatttttttcccagcaaaa
atgtttcatgaccacctactaggagccaagtcctatgtagacaatgaagg
catttaaaaaaaacaaaacaaaaaaactttgcccttcaatcactgccttt
catggtgtggtctgagttctacgtatcagtaatgtatatgaagtgctatg
gaacaagagagattaatgactgtttcttcttacaagagattagagaagac
tagcataggttaactttcctaaatcaagtataccatcaccaaaaaacctg
acaatagcattgtcaactgctcagttaaagagacagcatcaatttaagag
aaaatgggattcagtaaccaaaagtcaccacacaaccttatgacaatcct
ccaaaaaggtaaaaaagaaaaaatctaataatagtttttttcccccaaga
atttatttatttatatatgagtacactgtagcttgacttcagatgcacca
gaagaagggcatcagatttcattaccaggtaattgtgagcccgccatgat
gtggttgcctgggaatttggacctcaggaccttccggaggagcagtcagt
gcttttacccactgaagccatcctccaagcccatagtaatagtttcgttg
gccatgagaaatctaattcccgagtctggccaaatttt
gaattccagtaaggatccccagtgttgatgtgttcttcagttaccttcct
ttccttctactctcctggcttttgtttgtttggttttcttaatgttttcc
ccattgtccaggttactgttcactcgtttaacagagttatgtggaagata
gagatcgcttgctcagtgcagagctcttgactagccagtgggaggcccga
ggtttgctcctagcaaaacacacaaaaccaaacccaaaactgttttcaat
gtgtttgctaatgaataaaatctggtatattcctagaattgttaatgctg
atatacattgtatcatttagcctctagtagctttagcagagtcagtgcct
gtctgactcaggcagtgtacttgtatgtttccttttctgtgttgagatag
tgttattggattaacttaagtgttgatgtttctttccctagcaatcagca
gaacgctgtgtaagcacactgcttgatctaatccagaccaaagtaaatta
tgtggtccaagaggcaattgttgtcatcagggacatcttccgaaaatacc
ccaacaagtatgtcaaaattcatgtaatcttctttctcagatcatttggg
aaacgtataagtaaggcactttgaaattgactcggtaagaattattattc
catatataactggtcatagtagatttttttttaatgaagtcagagataca
tagtgggtatcaaaacagacactaaaacttctcgtttaaatatgggaatg
gagttttaagttggccccatgtgctggggattacaggcatgagccaccat
agcagctgttcattattttttgtagaaatgaggcttagcttaagtatata
cttggcatagaactacatcaaacaaattaagattgtttgttgttgtcaga
gttaccattacacaggaagcctatttatccctaggtgtcttgatacactc
gctccatgcagaccaatgatgtggtcctcttcctctcagaatacttttca
gcgccatgctgttggctcagcatggggcccactgctgggtggagcagcaa
gtgcattcattagtacctcccctgggctctggctgaaccactgggggctg
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_83300998_83302165
seq2: B6Ng01-160C12.b_44_1231 (reverse)

seq1  AAAATTTGGCATGACT--GGAAATAGATTTCTCATGGGCAACGAAACTAT  48
      ||||||||||  ||||  |||| |||||||||||||| ||||||||||||
seq2  AAAATTTGGCCAGACTCGGGAATTAGATTTCTCATGGCCAACGAAACTAT  50

seq1  TACTA-GGGCTGGGA-GATGGC-TCAGTGGGTAAAAGCACTGACTGCTCC  95
      ||||| ||||| ||| |||||| |||||||||||||||||||||||||||
seq2  TACTATGGGCTTGGAGGATGGCTTCAGTGGGTAAAAGCACTGACTGCTCC  100

seq1  TCC-GAAGGTCCTGAGTTC--AAATCCCA-GCAACCACATCATGGC-GGC  140
      ||| |||||||||||| ||  || ||||| |||||||||||||||| |||
seq2  TCCGGAAGGTCCTGAGGTCCAAATTCCCAGGCAACCACATCATGGCGGGC  150

seq1  TCACAATTACCT-GTAATGAAATCTGATGCCC-TCTTCTGGTGCATCTGA  188
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TCACAATTACCTGGTAATGAAATCTGATGCCCTTCTTCTGGTGCATCTGA  200

seq1  AGTC-AGCTACAGTGTACTCATATAT-AATAAATAAA-TCTTGGGGGAAA  235
      |||| ||||||||||||||||||||| |||||||||| ||||||||||||
seq2  AGTCAAGCTACAGTGTACTCATATATAAATAAATAAATTCTTGGGGGAAA  250

seq1  AAAACTATTATTAGATTTTT--CTTTTTAACTTTTTGGA-GATTGTCATA  282
      ||||||||||||||||||||   |||||| ||||||||| ||||||||||
seq2  AAAACTATTATTAGATTTTTTCTTTTTTACCTTTTTGGAGGATTGTCATA  300

seq1  AGGTTGTGTGGTGACTTTTGGTTACTGATTCC--ATTTCTCTTAAATTGA  330
      |||||||||||||||||||||||||||| |||   |||||||||||||||
seq2  AGGTTGTGTGGTGACTTTTGGTTACTGAATCCCATTTTCTCTTAAATTGA  350

seq1  TGCTGTCTCTTAAACTGAGCAGTTGACAATGCTATTGTCAGGTTTTTTGG  380
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTCTTTAACTGAGCAGTTGACAATGCTATTGTCAGGTTTTTTGG  400

seq1  TGATGGTATACTTGATTTAGGAAAGTTAACCTATGCTAGTCTTCTCTAAT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTATACTTGATTTAGGAAAGTTAACCTATGCTAGTCTTCTCTAAT  450

seq1  CTCTTGTAAGAAGAAACAGTCATTAATCTCTCTTGTTCCATAGCACTTCA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTAAGAAGAAACAGTCATTAATCTCTCTTGTTCCATAGCACTTCA  500

seq1  TATACATTACTGATACGTAGAACTCAGACCACACCATGAAAGGCAGTGAT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTACTGATACGTAGAACTCAGACCACACCATGAAAGGCAGTGAT  550

seq1  TGAAGGGCAAAGTTTTTTTGTTTTGTTTTTTTTAAATGCCTTCATTGTCT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGCAAAGTTTTTTTGTTTTGTTTTTTTTAAATGCCTTCATTGTCT  600

seq1  ACATAGGACTTGGCTCCTAGTAGGTGGTCATGAAACATTTTTGCTGGGAA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGACTTGGCTCCTAGTAGGTGGTCATGAAACATTTTTGCTGGGAA  650

seq1  AAAAATTATTTTGGCGATGATAGGAATTGAATTCCATGATCTTTCTATGT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATTTTGGCGATGATAGGAATTGAATTCCATGATCTTTCTATGT  700

seq1  GTAGGGCAAACATTTCATCACTGAGTTATATTCCTAGCCATATTGATAAT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCAAACATTTCATCACTGAGTTATATTCCTAGCCATATTGATAAT  750

seq1  AGAGTCAATGAGTAAAAATCATTACTGGATATCTTTTCTTGGTTTGAAAA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAATGAGTAAAAATCATTACTGGATATCTTTTCTTGGTTTGAAAA  800

seq1  GTGTGTAGTGGCTGTGGTTTTGCAGGCCTGACCTGTGCTTGAATTATTTT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTAGTGGCTGTGGTTTTGCAGGCCTGACCTGTGCTTGAATTATTTT  850

seq1  TAATATCTTTGAGGTGAAGGAAATAAAATTAGAATTCTGTCTTTAGTTTA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTTTGAGGTGAAGGAAATAAAATTAGAATTCTGTCTTTAGTTTA  900

seq1  TTAATCCAGATTTTTAGTTTAGCTTAAGTAATTTTATTTGCTGTCTTATT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCAGATTTTTAGTTTAGCTTAAGTAATTTTATTTGCTGTCTTATT  950

seq1  TTTTAGAAAAATGGAATTTCATGTAGATGTAATTCTTTTTTTTTTTTTTT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAAAATGGAATTTCATGTAGATGTAATTCTTTTTTTTTTTTTTT  1000

seq1  TTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTTGCTGTCTTGC  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTTGCTGTCTTGC  1050

seq1  TGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCC  1100

seq1  GCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACCG  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACCG  1150

seq1  CCTGGCTTGTAGATGTAATTCTTAAGCACATTGAATTC  1168
      ||||||| ||||||||||||||||||||||||||||||
seq2  CCTGGCTAGTAGATGTAATTCTTAAGCACATTGAATTC  1188

seq1: chr11_83152374_83153474
seq2: B6Ng01-160C12.g_66_1166

seq1  GAATTCCAGTAAGGATCCCCAGTGTTGATGTGTTCTTCAGTTACCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAAGGATCCCCAGTGTTGATGTGTTCTTCAGTTACCTTCCT  50

seq1  TTCCTTCTACTCTCCTGGCTTTTGTTTGTTTGGTTTTCTTAATGTTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTACTCTCCTGGCTTTTGTTTGTTTGGTTTTCTTAATGTTTTCC  100

seq1  CCATTGTCCAGGTTACTGTTCACTCGTTTAACAGAGTTATGTGGAAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTCCAGGTTACTGTTCACTCGTTTAACAGAGTTATGTGGAAGATA  150

seq1  GAGATCGCTTGCTCAGTGCAGAGCTCTTGACTAGCCAGTGGGAGGCCCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCGCTTGCTCAGTGCAGAGCTCTTGACTAGCCAGTGGGAGGCCCGA  200

seq1  GGTTTGCTCCTAGCAAAACACACAAAACCAAACCCAAAACTGTTTTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCTCCTAGCAAAACACACAAAACCAAACCCAAAACTGTTTTCAAT  250

seq1  GTGTTTGCTAATGAATAAAATCTGGTATATTCCTAGAATTGTTAATGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCTAATGAATAAAATCTGGTATATTCCTAGAATTGTTAATGCTG  300

seq1  ATATACATTGTATCATTTAGCCTCTAGTAGCTTTAGCAGAGTCAGTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATTGTATCATTTAGCCTCTAGTAGCTTTAGCAGAGTCAGTGCCT  350

seq1  GTCTGACTCAGGCAGTGTACTTGTATGTTTCCTTTTCTGTGTTGAGATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACTCAGGCAGTGTACTTGTATGTTTCCTTTTCTGTGTTGAGATAG  400

seq1  TGTTATTGGATTAACTTAAGTGTTGATGTTTCTTTCCCTAGCAATCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTGGATTAACTTAAGTGTTGATGTTTCTTTCCCTAGCAATCAGCA  450

seq1  GAACGCTGTGTAAGCACACTGCTTGATCTAATCCAGACCAAAGTAAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCTGTGTAAGCACACTGCTTGATCTAATCCAGACCAAAGTAAATTA  500

seq1  TGTGGTCCAAGAGGCAATTGTTGTCATCAGGGACATCTTCCGAAAATACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCCAAGAGGCAATTGTTGTCATCAGGGACATCTTCCGAAAATACC  550

seq1  CCAACAAGTATGTCAAAATTCATGTAATCTTCTTTCTCAGATCATTTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAGTATGTCAAAATTCATGTAATCTTCTTTCTCAGATCATTTGGG  600

seq1  AAACGTATAAGTAAGGCACTTTGAAATTGACTCGGTAAGAATTATTATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTATAAGTAAGGCACTTTGAAATTGACTCGGTAAGAATTATTATTC  650

seq1  CATATATAACTGGTCATAGTAGATTTTTTTTTAATGAAGTCAGAGATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAACTGGTCATAGTAGATTTTTTTTTAATGAAGTCAGAGATACA  700

seq1  TAGTGGGTATC-AAACAGACACTAAAACTTCTCGTTTAAATATGGGAATG  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGTATCAAAACAGACACTAAAACTTCTCGTTTAAATATGGGAATG  750

seq1  GAGTTTTAAGTTGGCCCCATGTGCT-GGGATTACAGGCATGAGCCACCAT  798
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGTTTTAAGTTGGCCCCATGTGCTGGGGATTACAGGCATGAGCCACCAT  800

seq1  AGCAGCTGTTCATTA-TTTTTGTAGAAATGAGGCTTAGCTTAAGTATATA  847
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGTTCATTATTTTTTGTAGAAATGAGGCTTAGCTTAAGTATATA  850

seq1  CTTGGCATAG-ACTACATCAAACACA-TAAGATTGTTTGTTG-TGTCAGA  894
      |||||||||| ||||||||||||| | ||||||||||||||| |||||||
seq2  CTTGGCATAGAACTACATCAAACAAATTAAGATTGTTTGTTGTTGTCAGA  900

seq1  GTTACCATTACACAGGAAGCCTATTTATCCCTAGGTGTCTTGATACACTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCATTACACAGGAAGCCTATTTATCCCTAGGTGTCTTGATACACTC  950

seq1  GCTCCATGCAGACCAATGATTGTGTCCTTCCTCCTCTCAGAATAACTTTT  994
      ||||||||||||||||||| ||||  | || |||||||||||| ||||||
seq2  GCTCCATGCAGACCAATGA-TGTGGTCCTCTTCCTCTCAGAAT-ACTTTT  998

seq1  CCAGCCGCCATGCTGTTTGCTCAGCATGGGGCCCCACTGCCTTGTGGGAG  1044
       ||| |||||||||||| ||||||||||||| ||||||| || |  ||||
seq2  -CAG-CGCCATGCTGTTGGCTCAGCATGGGG-CCCACTG-CTGGGTGGAG  1044

seq1  CAGCAGAGTGCATTCAATAAGTTACTCCCCTGGCCTCT-GCTGACACACT  1093
      ||||| ||||||||| || |||  ||||||||| |||| |||||  ||||
seq2  CAGCA-AGTGCATTC-ATTAGTACCTCCCCTGGGCTCTGGCTGAACCACT  1092

seq1  -GGGGCTGC  1101
       ||||||||
seq2  GGGGGCTGC  1101