BAC Information

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BAC

Clone NameB6Ng01-161C04
Chromosome11 (Build37)
Map Location 72,640,089 - 72,807,718
singlet/doubletdoublet
Overlap geneZzef1, LOC627119, Atp2a3
Upstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2
Downstream geneP2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161C04.bB6Ng01-161C04.g
ACCDH954333DH954334
length1,0741,100
definitionDH954333|Mus musculus domesticus DNA, BAC clone: B6Ng01-161C04, 5' end.DH954334|Mus musculus domesticus DNA, BAC clone: B6Ng01-161C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,640,089 - 72,641,184)(72,806,590 - 72,807,718)
sequence
gaattcaaggccagcctggtctacagagccaattctaggacagccagggt
gatacagactcaaaaaaaccaaacaaacaaatcatttttattaaaccttt
taaagttagagaagtatggcaagaataatcaaataatctttgtccagtca
tgtgagagtccccagatactttaataatgtgctccctataaacaacattt
tctgaaaaaccaccatctgaggaaattaatgtgttcctaagatcccattt
gttttttctgagttgtgccagtaaagcccttcagcaggaagatctgttcc
tgagttgtattttgcatttctttgtcgtgtccctttagtgtccctaagtc
tagaacaaatcttcagtcttcccttgactttaacaactttgaccccctct
aaaaattagttccctaggactgtgtgatgtttgtttcatcacaaacagat
ttaggttttatatttcattttgctcaattgagagtcttcctgtgtagcct
agactgccctgtaactcacagcttcctgcctcagcctcccaagtgttggg
cactcaggtgtgtgcccaggcctggctgctgtgtcttgagcagggttgtc
cgactgatgctgtgctctcactgcagtccatctgcacatggcctgctctt
ggaaccactactgtcagctttgactttgtcagatttgtcaagtctagagt
ttttttttctttataattgattatttggtaaggaggtaatttagggctaa
atctcacccctatgaaactttctatttgtaaggatttctgttattaagga
ttcacagatttctagtttattcactgggtttaactaaccacagcttttaa
aaaatctttgttttatttttgtgtgcctgtttttttctgtttatacacat
gtgtgtagtgcccacagaggtcagaagaagctttggatcccttggaactg
gagttataagcagtgtagcactgatattagtgccaggacaaaccagatca
cagtaaaacagccatgctttaccccaacatcgctagtccagccacagttt
aatgctcacatgttcccagatatg
gaattctagttttcttccttcccgccttaatgtgctctaccactgctttg
taacaccttgggcagttttgtctgttttatcttactaactagaacccagc
ccagctcagtggctaagtttgggggctctaggttttcactttgcaatggg
ctctgcagatgatatagctagtcctacctctttccctgcgtttcagggcc
tgggtatccagatctccatcccaggacagctaggtagaggattagatgct
aaaccttcacggtgagccttctctccagagacacggctagtcccttctca
cagctgtctcccaggaccacctgaggaggctggctcatcctaagcaccat
cacagagatgtgcctgggaggcaggagctggggagaatcatagggaatgg
gtagaaacctttgagagggcataggactggaaatgggattaattgctgaa
gccaacgggatggaaacatagcaagagagaaaccctatcgagaatcatgg
gcactacagaattgccagcaggtatttgcctatctacaaatcccaggatg
gcccagacctttgctgcaactctcctgccccagcctctttagtgctgagg
tttcagacgtgcactgccatggttgacttatcacaatggttttaagctat
ctatgtagctgtgtgtgttgataattttatgcttctatgttgctaaagat
tttctgttggacaaagatatcatgggtggctcatccatctgaatgtgact
acactcctttaacaggcaacagcctgctggggtcaggttctggatgcccg
ggattccaagggaaagggggttccattccacccccagctccttttccttt
gaggtgacatgttatcataaaatatgtgattaaacagtgagcgctgcttt
taaactgctaacagtgagcatagcaggctgtcaatgaaggcagctcaccc
actctgcaatgggggtgtgggttcagtcttgagattcacttatgtttttc
aagccatcttgagtagaaatggacttggcttgggatgaccgactttaact
ctgctaattcagtggattcctccccctttacccccatccccacctatagc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_72640089_72641184
seq2: B6Ng01-161C04.b_46_1119

seq1  GAATTCAAGGCCAGCCTGGTCTACAGAGCCAATTCTAGGACAGCCAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGGTCTACAGAGCCAATTCTAGGACAGCCAGGGT  50

seq1  GATACAGACTCAAAAAAACCAAACAAACAAATCATTTTTATTAAACCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGACTCAAAAAAACCAAACAAACAAATCATTTTTATTAAACCTTT  100

seq1  TAAAGTTAGAGAAGTATGGCAAGAATAATCAAATAATCTTTGTCCAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTAGAGAAGTATGGCAAGAATAATCAAATAATCTTTGTCCAGTCA  150

seq1  TGTGAGAGTCCCCAGATACTTTAATAATGTGCTCCCTATAAACAACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGTCCCCAGATACTTTAATAATGTGCTCCCTATAAACAACATTT  200

seq1  TCTGAAAAACCACCATCTGAGGAAATTAATGTGTTCCTAAGATCCCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAACCACCATCTGAGGAAATTAATGTGTTCCTAAGATCCCATTT  250

seq1  GTTTTTTCTGAGTTGTGCCAGTAAAGCCCTTCAGCAGGAAGATCTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTCTGAGTTGTGCCAGTAAAGCCCTTCAGCAGGAAGATCTGTTCC  300

seq1  TGAGTTGTATTTTGCATTTCTTTGTCGTGTCCCTTTAGTGTCCCTAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGTATTTTGCATTTCTTTGTCGTGTCCCTTTAGTGTCCCTAAGTC  350

seq1  TAGAACAAATCTTCAGTCTTCCCTTGACTTTAACAACTTTGACCCCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAAATCTTCAGTCTTCCCTTGACTTTAACAACTTTGACCCCCTCT  400

seq1  AAAAATTAGTTCCCTAGGACTGTGTGATGTTTGTTTCATCACAAACAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAGTTCCCTAGGACTGTGTGATGTTTGTTTCATCACAAACAGAT  450

seq1  TTAGGTTTTATATTTCATTTTGCTCAATTGAGAGTCTTCCTGTGTAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTTATATTTCATTTTGCTCAATTGAGAGTCTTCCTGTGTAGCCT  500

seq1  AGACTGCCCTGTAACTCACAGCTTCCTGCCTCAGCCTCCCAAGTGTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCCCTGTAACTCACAGCTTCCTGCCTCAGCCTCCCAAGTGTTGGG  550

seq1  CACTCAGGTGTGTGCCCAGGCCTGGCTGCTGTGTCTTGAGCAGGGTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGTGTGTGCCCAGGCCTGGCTGCTGTGTCTTGAGCAGGGTTGTC  600

seq1  CGACTGATGCTGTGCTCTCACTGCAGTCCATCTGCACATGGCCTGCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGATGCTGTGCTCTCACTGCAGTCCATCTGCACATGGCCTGCTCTT  650

seq1  GGAACCACTACTGTCAGCTTTGACTTTGTCAGATTTGTCAAGTCTAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCACTACTGTCAGCTTTGACTTTGTCAGATTTGTCAAGTCTAGAGT  700

seq1  TTTTTTTTCTTTATAATTGATTATTTGGTAAGGAGGTAATTTAGGGCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTTTATAATTGATTATTTGGTAAGGAGGTAATTTAGGGCTAA  750

seq1  ATCTCACCCCTATGAAACTTTCTATTTGTAAGGATTTCTGTTATTAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCCCTATGAAACTTTCTATTTGTAAGGATTTCTGTTATTAAGGA  800

seq1  TTCACAGATTTCTAGTTTATTCACTGGGTTATAACTAACCACAGCTTTTA  850
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  TTCACAGATTTCTAGTTTATTCACTGGGTT-TAACTAACCACAGCTTTT-  848

seq1  AAAAAATCTTTGTTTTTATTTTTGTGTGCCTGTTTTTTTCTGTTTATACC  900
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  AAAAAATCTTTG-TTTTATTTTTGTGTGCCTGTTTTTTTCTGTTTATA-C  896

seq1  ACATGTGTGTAGTGCCCACAGAGGTCAGAAGAAAGCTTTGGATCCCTTGG  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACATGTGTGTAGTGCCCACAGAGGTCAGAAG-AAGCTTTGGATCCCTTGG  945

seq1  AACTGGAGTTATAAGCAGTTGTAAGCCACCTGATATAAGTGCCAGGAACC  1000
      |||||||||||||||||| ||| |||   ||||||| ||||||||||  |
seq2  AACTGGAGTTATAAGCAG-TGT-AGC--ACTGATATTAGTGCCAGGA--C  989

seq1  AAACCCAGAATCACAGTAAAAACAGCCCATGCTTTTAACCCCCAAACCAT  1050
      ||| |||| |||||||| ||||||| |||||||||  |||||   | |||
seq2  AAA-CCAG-ATCACAGT-AAAACAG-CCATGCTTT--ACCCC---AACAT  1030

seq1  CGCTAGTCCCAGCCACAGTTTTAATGCTCACATGTTCCCAGATATG  1096
      ||||||| |||||||||| |||||||||||||||||||||||||||
seq2  CGCTAGT-CCAGCCACAG-TTTAATGCTCACATGTTCCCAGATATG  1074

seq1: chr11_72806590_72807718
seq2: B6Ng01-161C04.g_69_1168 (reverse)

seq1  GCTATGGTGGGGGAGTGGGGTGAAGGGGGAGGGCATCCACCTGGAATTAG  50
      ||||| |  |||||  ||||| |||||||| || ||||||   |||||||
seq2  GCTATAGGTGGGGATGGGGGTAAAGGGGGA-GGAATCCAC--TGAATTAG  47

seq1  CAGAGTTAAAAGTCTGGGGTCCCATCCCAAAGCCAAGTCCATCTCTTACT  100
      ||||||| ||||||   |||  |||||| ||||||||||||| || ||||
seq2  CAGAGTT-AAAGTC---GGT--CATCCC-AAGCCAAGTCCATTTC-TACT  89

seq1  CAAAGATGGGGCTTTGAAAAACACTAAGTTGGAATCTCAAGACTGGACCC  150
      | |||||||    |||||||||| |||||  |||||||||||||| ||||
seq2  C-AAGATGG---CTTGAAAAACA-TAAGT--GAATCTCAAGACTGAACCC  132

seq1  ACACCCCAATGGCAGAAGTGGGGTGAGCCTGCCCTTCATTGGAACAGCCT  200
      ||||||| || |||| ||| ||||||| ||| |||||||||  |||||||
seq2  ACACCCCCATTGCAG-AGT-GGGTGAG-CTG-CCTTCATTG--ACAGCCT  176

seq1  GCTTATTGCTCCACTGTTAGCAGTTTAAAAGCAGCGCTCAACTGTTTAAT  250
      |||   |||| |||||||||||||||||||||||||||| ||||||||||
seq2  GCT--ATGCT-CACTGTTAGCAGTTTAAAAGCAGCGCTC-ACTGTTTAAT  222

seq1  CACATATTTTATGATTAACATGTCACCTCAAAGGAAAAGGAGCTGGGGGT  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACATATTTTATGA-TAACATGTCACCTCAAAGGAAAAGGAGCTGGGGGT  271

seq1  GGAATGGAACCCCCTTGTCCCTTGGAATCCCGGGCATCCAGAACCTGACC  350
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGAATGGAACCCCCTT-TCCCTTGGAATCCCGGGCATCCAGAACCTGACC  320

seq1  CCAGCAGGCTGTTGCCTGTTAAAGGAGTGTAGTCACCTTCAGATGGATGA  400
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCAGCAGGCTGTTGCCTGTTAAAGGAGTGTAGTCACATTCAGATGGATGA  370

seq1  GCCACCCATGATATCTTTGTCCAACAGAAAATCTTTAGCAACATAGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCATGATATCTTTGTCCAACAGAAAATCTTTAGCAACATAGAAGC  420

seq1  AT-AAATTATCAACACACACAGCTACATAGATAGCTTAAAACCATTGTGA  499
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTATCAACACACACAGCTACATAGATAGCTTAAAACCATTGTGA  470

seq1  TAAGTCAACCATGGCAGTGCACGTCTGAAACCTCAGCACTAAAGAGGCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAACCATGGCAGTGCACGTCTGAAACCTCAGCACTAAAGAGGCTG  520

seq1  GGGCAGGAGAGTTGCAGCAAAGGTCTGGGCCATCCTGGGATTTGTAGATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAGAGTTGCAGCAAAGGTCTGGGCCATCCTGGGATTTGTAGATA  570

seq1  GGCAAATACCTGCTGGCAATTCTGTAGTGCCCATGATTCTCGATAGGGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATACCTGCTGGCAATTCTGTAGTGCCCATGATTCTCGATAGGGTT  620

seq1  TCTCTCTTGCTATGTTTCCATCCCGTTGGCTTCAGCAATTAATCCCATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTGCTATGTTTCCATCCCGTTGGCTTCAGCAATTAATCCCATTT  670

seq1  CCAGTCCTATGCCCTCTCAAAGGTTTCTACCCATTCCCTATGATTCTCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCTATGCCCTCTCAAAGGTTTCTACCCATTCCCTATGATTCTCCC  720

seq1  CAGCTCCTGCCTCCCAGGCACATCTCTGTGATGGTGCTTAGGATGAGCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTGCCTCCCAGGCACATCTCTGTGATGGTGCTTAGGATGAGCCA  770

seq1  GCCTCCTCAGGTGGTCCTGGGAGACAGCTGTGAGAAGGGACTAGCCGTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTCAGGTGGTCCTGGGAGACAGCTGTGAGAAGGGACTAGCCGTGT  820

seq1  CTCTGGAGAGAAGGCTCACCGTGAAGGTTTAGCATCTAATCCTCTACCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGAGAAGGCTCACCGTGAAGGTTTAGCATCTAATCCTCTACCTA  870

seq1  GCTGTCCTGGGATGGAGATCTGGATACCCAGGCCCTGAAACGCAGGGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGGATGGAGATCTGGATACCCAGGCCCTGAAACGCAGGGAAA  920

seq1  GAGGTAGGACTAGCTATATCATCTGCAGAGCCCATTGCAAAGTGAAAACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGACTAGCTATATCATCTGCAGAGCCCATTGCAAAGTGAAAACC  970

seq1  TAGAGCCCCCAAACTTAGCCACTGAGCTGGGCTGGGTTCTAGTTAGTAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCCCCAAACTTAGCCACTGAGCTGGGCTGGGTTCTAGTTAGTAAG  1020

seq1  ATAAAACAGACAAAACTGCCCAAGGTGTTACAAAGCAGTGGTAGAGCACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAGACAAAACTGCCCAAGGTGTTACAAAGCAGTGGTAGAGCACA  1070

seq1  TTAAGGCGGGAAGGAAGAAAACTAGAATTC  1129
      ||||||||||||||||||||||||||||||
seq2  TTAAGGCGGGAAGGAAGAAAACTAGAATTC  1100