BAC Information

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BAC

Clone NameB6Ng01-161J11
Chromosome11 (Build37)
Map Location 27,118,625 - 27,243,863
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneLOC100042377, EG626571
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161J11.bB6Ng01-161J11.g
ACCDH954664DH954665
length1,0801,187
definitionDH954664|Mus musculus domesticus DNA, BAC clone: B6Ng01-161J11, 5' end.DH954665|Mus musculus domesticus DNA, BAC clone: B6Ng01-161J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,118,625 - 27,119,706)(27,242,675 - 27,243,863)
sequence
gaattcattctacaattttcctgctaggatatttgatggtatagaaattg
atcctggagaaaaatattagttaaattgaaatgttgccaaagtatgaata
tcagtaagcccaatgttctcaatgatattgttcatttgtattttggtgac
tgatccatcccctatatagatattatttctaacatgtagacactgtaatt
ggtcaataaattgaaataaatttgtatcaaagaaatcactgtacatttaa
agtcagcagcatttctattttttaggactaatatgtacttctatgatcta
tgtggtccagtaaagagtaagttgaataagtggatacagttatccatatc
cctaatgagtcagtcataactagtgttattttctatatattattctactt
gttagtttaatttttctatgaaagcaatggcactattatagaaattatta
atatgtgtagctgtaagaccccaactcaatgtgtttcatagacccttaga
aatgaagcccagcatagagttgtttgttcttttgcctttagcctgaaaga
atgatgacctctgggtgacacaccctggcgcctgaccattgtgtaaggga
ccaagaatgtttactcaacttccccagtctttgtgattttatccttccct
cacttcattctttaaaatccctcgactactactgctgggggtcacagggt
gctccgcctcagcatgctgattcccgattaaacctcatgtgatattgcat
caagaacagtttctcttgagttattggggagtcggctcatcccaggactt
taagcgagggtctccccgaaacgggggtctttcatagcaagaattaataa
taacaatataaaactaccttgcaatccatgagatcaaaccttaaattcat
ccacggggcagattagttttaattaattatctggtagacaagaggtacca
gtcaactgggaggggtagaagaacaggtcacaggggtacaggttgatcaa
agtacttgtttacgcttacaacgtcatcgggaactattatcatgtatgtt
agtacatggctagtggaaaacattcagaaa
gaattctatgacttgactatattttaaacttcacagtgcatttcatggga
tcacccctttcaaatatcaaaatatagagccatctcaaagttctaaatac
acttttatattttattgcaaagatgattcaaagaatgctaaaaatcgtag
agggaaaataatttctgttttgaattttggaataagatgaaattgtttat
agttaatctggagccaacaaacatctttgtgcaaccggccatcattttat
tcttcctgtgttccttcatattgatctgatatcaggatgaatagaaatgc
cgaaaatgttgggttctttgcttagtactatatttaagttagaaactgtc
ttcagagtttattttactctatttcgattttagctacaggactaaaacta
atagggaaaatttagattacagtttagggatactgcagtgtaaaacctgg
cagtctcttaacaccatgtaaagctatttttgtacacgtctggcctttaa
ataccttcttcactgaaaggtaatccataataggtattatcctgttgctg
cgtgtaggcagacagactaataagctgtgaaggatcgagaaagccactgg
ttctgaagctgaaacatcagctttgcttggcagattcaattactaattaa
tcagtgtagttcatatcagcagcgaaaaggtctcctttcatgtcagtgta
gataatttatgattctagaggcttttcagcaggaatatttagtttcagta
agtccatctagttgtactaacatatcacagcagtaaaatacatgccaatg
tgatatttcaaaatcttctcaagctaaaaaatctcctttgtggggagagg
caactttggcaactttgtgttattatcaaagatacagttaaattttgttt
taattagtataacttttggcaggttgagtctgtttcatttaaaattgttc
tacaagcataattcagagtttacatactttactttaaagcttcaaattag
catagtaaactcatatctgattgtcattgcatatatttttttttaaaaga
tgtagatgattaagaagcttcttgaaccaagaaagatttacattatatga
atgtcagcatctggtgaaatctgaccatcatgagtcttaatggatggtat
cctgggaatcaatttaactaaaatcacatggctgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_27118625_27119706
seq2: B6Ng01-161J11.b_46_1125

seq1  GAATTCATTCTACAATTTTCCTGCTAGGATATTTGATGGTATAGAAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTACAATTTTCCTGCTAGGATATTTGATGGTATAGAAATTG  50

seq1  ATCCTGGAGAAAAATATTAGTTAAATTGAAATGTTGCCAAAGTATGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGAGAAAAATATTAGTTAAATTGAAATGTTGCCAAAGTATGAATA  100

seq1  TCAGTAAGCCCAATGTTCTCAATGATATTGTTCATTTGTATTTTGGTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAGCCCAATGTTCTCAATGATATTGTTCATTTGTATTTTGGTGAC  150

seq1  TGATCCATCCCCTATATAGATATTATTTCTAACATGTAGACACTGTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATCCCCTATATAGATATTATTTCTAACATGTAGACACTGTAATT  200

seq1  GGTCAATAAATTGAAATAAATTTGTATCAAAGAAATCACTGTACATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATAAATTGAAATAAATTTGTATCAAAGAAATCACTGTACATTTAA  250

seq1  AGTCAGCAGCATTTCTATTTTTTAGGACTAATATGTACTTCTATGATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCAGCATTTCTATTTTTTAGGACTAATATGTACTTCTATGATCTA  300

seq1  TGTGGTCCAGTAAAGAGTAAGTTGAATAAGTGGATACAGTTATCCATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCCAGTAAAGAGTAAGTTGAATAAGTGGATACAGTTATCCATATC  350

seq1  CCTAATGAGTCAGTCATAACTAGTGTTATTTTCTATATATTATTCTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGAGTCAGTCATAACTAGTGTTATTTTCTATATATTATTCTACTT  400

seq1  GTTAGTTTAATTTTTCTATGAAAGCAATGGCACTATTATAGAAATTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTTAATTTTTCTATGAAAGCAATGGCACTATTATAGAAATTATTA  450

seq1  ATATGTGTAGCTGTAAGACCCCAACTCAATGTGTTTCATAGACCCTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTAGCTGTAAGACCCCAACTCAATGTGTTTCATAGACCCTTAGA  500

seq1  AATGAAGCCCAGCATAGAGTTGTTTGTTCTTTTGCCTTTAGCCTGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCCCAGCATAGAGTTGTTTGTTCTTTTGCCTTTAGCCTGAAAGA  550

seq1  ATGATGACCTCTGGGTGACACACCCTGGCGCCTGACCATTGTGTAAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGACCTCTGGGTGACACACCCTGGCGCCTGACCATTGTGTAAGGGA  600

seq1  CCAAGAATGTTTACTCAACTTCCCCAGTCTTTGTGATTTTATCCTTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAATGTTTACTCAACTTCCCCAGTCTTTGTGATTTTATCCTTCCCT  650

seq1  CACTTCATTCTTTAAAATCCCTCGACTACTACTGCTGGGGGTCACAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCATTCTTTAAAATCCCTCGACTACTACTGCTGGGGGTCACAGGGT  700

seq1  GCTCCGCCTCAGCATGCTGATTCCCGATTAAACCTCATGTGATATTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGCCTCAGCATGCTGATTCCCGATTAAACCTCATGTGATATTGCAT  750

seq1  CAAGAACAGTTTCTCTTGAGTTATTGGGGAGTCGGCTCATCCCAGGAC-T  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAAGAACAGTTTCTCTTGAGTTATTGGGGAGTCGGCTCATCCCAGGACTT  800

seq1  TAAGCGAGGGTCTCCCCGAAACGGGGGTCTTTCATAGCAAGAATTAATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCGAGGGTCTCCCCGAAACGGGGGTCTTTCATAGCAAGAATTAATAA  850

seq1  TAACAATATAAAAACTACCTTGCAATCCATGAGATCAAACCTTAAATTCA  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATAT-AAAACTACCTTGCAATCCATGAGATCAAACCTTAAATTCA  899

seq1  TCCACGGGGCAGATTAGTTTTAAATAATTATCT-GTAGACAAGAGGTACC  948
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  TCCACGGGGCAGATTAGTTTTAATTAATTATCTGGTAGACAAGAGGTACC  949

seq1  AGTCAACT-GGAGGGGTAGAAGAACAGGTCACAGGGGTACAAGTTTGATC  997
      |||||||| ||||||||||||||||||||||||||||||| || ||||||
seq2  AGTCAACTGGGAGGGGTAGAAGAACAGGTCACAGGGGTAC-AGGTTGATC  998

seq1  AAAGTACTTTGTTTACGCTTACAAACGTCATCGGGAAACCTATTATCATG  1047
      ||||||| |||||||||||||| ||||||||||||||  |||||||||||
seq2  AAAGTAC-TTGTTTACGCTTAC-AACGTCATCGGGAA--CTATTATCATG  1044

seq1  TAATGTTAGTACAT-GCTAGT-GAAAACATTCAGAAA  1082
      | |||||||||||| |||||| |||||||||||||||
seq2  T-ATGTTAGTACATGGCTAGTGGAAAACATTCAGAAA  1080

seq1: chr11_27242675_27243863
seq2: B6Ng01-161J11.g_68_1254 (reverse)

seq1  GCTCAGACCATGTAGATTTTAGTTAATAGGTATTCCCAGGGATACCTATC  50
      |||||| |||||| |||||||||||| |   ||||||| |||||||   |
seq2  GCTCAG-CCATGT-GATTTTAGTTAA-ATTGATTCCCA-GGATACCATCC  46

seq1  AGTAAGACTCATGTATGTCAGATATTCA-CAGATGGCTGACATGTCATAT  99
      | |||||||||||   ||||||| |||| ||||| |||||||| ||||||
seq2  ATTAAGACTCATGATGGTCAGAT-TTCACCAGAT-GCTGACAT-TCATAT  93

seq1  ATGTTAAATCCTTTCTTGGCTCTAGGAAGCTTCTTAATCATTCTACATCT  149
      |   ||||| ||||||||| || | ||||||||||||||| |||||||||
seq2  AATGTAAAT-CTTTCTTGGTTC-AAGAAGCTTCTTAATCA-TCTACATCT  140

seq1  TTT--AAAAAAATATATGCATTGACAATCAGATATGAGTTTACTATGCTA  197
      |||  ||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTAAAAAAAAATATATGCAATGACAATCAGATATGAGTTTACTATGCTA  190

seq1  ATTTGAAGCTTTAAGGTAAAGTATGTAAACTTCTGAATTATGCTTGTAGA  247
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  ATTTGAAGCTTTAAAGTAAAGTATGTAAAC-TCTGAATTATGCTTGTAGA  239

seq1  CCATTTTTAAATGAAACAGACTC-AGCTGCCAAAGTTAATACTAATTAAA  296
       || ||||||||||||||||||| | ||||||||  | ||||||||||||
seq2  ACAATTTTAAATGAAACAGACTCAACCTGCCAAAAGTTATACTAATTAAA  289

seq1  AC-AGATTTAACTGTATCTTTGAT-ATAACACAAAGTTGCCTAAGTTGCC  344
      || | ||||||||||||||||||| |||||||||||||||| ||||||||
seq2  ACAAAATTTAACTGTATCTTTGATAATAACACAAAGTTGCCAAAGTTGCC  339

seq1  TCT-CCCAC-AAGGAGATTTTTTTAGCTTGAGAAGATTTTGAAAATATCA  392
      ||| ||||| ||||||| ||||||||||||||||||||||| ||||||||
seq2  TCTCCCCACAAAGGAGA-TTTTTTAGCTTGAGAAGATTTTG-AAATATCA  387

seq1  CATTGGCATGTATTTTACTGCTGTGATATGTTAGTACAACTAGATGGACT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCATGTATTTTACTGCTGTGATATGTTAGTACAACTAGATGGACT  437

seq1  TACTGAAACTAAATATTCCTGCTG-AAAGCCTCTAGAATCAT-AATTATC  490
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  TACTGAAACTAAATATTCCTGCTGAAAAGCCTCTAGAATCATAAATTATC  487

seq1  TACACTGACATGAAAGGAGACC-TTTCGCTGCTGATATGAACTACACTGA  539
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TACACTGACATGAAAGGAGACCTTTTCGCTGCTGATATGAACTACACTGA  537

seq1  TTAATTAGTAATTGAATCTGCCAAGCAAAGCTGATGTTTCAGCTTCAGAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGTAATTGAATCTGCCAAGCAAAGCTGATGTTTCAGCTTCAGAA  587

seq1  CCAGTGGCTTTCTCGATCCTTCACAGCTTATTAGTCTGTCTGCCTACACG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGCTTTCTCGATCCTTCACAGCTTATTAGTCTGTCTGCCTACACG  637

seq1  CAGCAACAGGATAATACCTATTATGGATTACCTTTCAGTGAAGAAGGTAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACAGGATAATACCTATTATGGATTACCTTTCAGTGAAGAAGGTAT  687

seq1  TTAAAGGCCAGACGTGTACAAAAATAGCTTTACATGGTGTTAAGAGACTG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCCAGACGTGTACAAAAATAGCTTTACATGGTGTTAAGAGACTG  737

seq1  CCAGGTTTTACACTGCAGTATCCCTAAACTGTAATCTAAATTTTCCCTAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTTACACTGCAGTATCCCTAAACTGTAATCTAAATTTTCCCTAT  787

seq1  TAGTTTTAGTCCTGTAGCTAAAATCGAAATAGAGTAAAATAAACTCTGAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTAGTCCTGTAGCTAAAATCGAAATAGAGTAAAATAAACTCTGAA  837

seq1  GACAGTTTCTAACTTAAATATAGTACTAAGCAAAGAACCCAACATTTTCG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTTCTAACTTAAATATAGTACTAAGCAAAGAACCCAACATTTTCG  887

seq1  GCATTTCTATTCATCCTGATATCAGATCAATATGAAGGAACACAGGAAGA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTATTCATCCTGATATCAGATCAATATGAAGGAACACAGGAAGA  937

seq1  ATAAAATGATGGCCGGTTGCACAAAGATGTTTGTTGGCTCCAGATTAACT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGATGGCCGGTTGCACAAAGATGTTTGTTGGCTCCAGATTAACT  987

seq1  ATAAACAATTTCATCTTATTCCAAAATTCAAAACAGAAATTATTTTCCCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAATTTCATCTTATTCCAAAATTCAAAACAGAAATTATTTTCCCT  1037

seq1  CTACGATTTTTAGCATTCTTTGAATCATCTTTGCAATAAAATATAAAAGT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGATTTTTAGCATTCTTTGAATCATCTTTGCAATAAAATATAAAAGT  1087

seq1  GTATTTAGAACTTTGAGATGGCTCTATATTTTGATATTTGAAAGGGGTGA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAGAACTTTGAGATGGCTCTATATTTTGATATTTGAAAGGGGTGA  1137

seq1  TCCCATGAAATGCACTGTGAAGTTTAAAATATAGTCAAGTCATAGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGAAATGCACTGTGAAGTTTAAAATATAGTCAAGTCATAGAATTC  1187