BAC Information

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BAC

Clone NameB6Ng01-161L24
Chromosome11 (Build37)11 (Build37)
Map Location 82,611,988 - 82,612,549104,397,355 - 104,398,141
singlet/doubletsingletsinglet
Overlap geneLig3
Upstream geneAccn1, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e, Cct6b, Ccdc16
Downstream geneRffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161L24.bB6Ng01-161L24.g
ACCDH954777DH954778
length760792
definitionDH954777|Mus musculus domesticus DNA, BAC clone: B6Ng01-161L24, 5' end.DH954778|Mus musculus domesticus DNA, BAC clone: B6Ng01-161L24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,611,988 - 82,612,549)(104,397,355 - 104,398,141)
sequence
gaattcccaaacatttcaaaactattcatgattcccgttttaattctatg
aatgtgggtaggtaccagcacccaggaaactaaggcaggaaaattacctg
aacccatgctggagagttttaagatcagctttggaaacatcgttaagacc
tcatctcaataaacaagacaatatgatgaattagatgaggggggggagga
ttgacttattatctccattccatgggaacaaagcaagattgaaactggta
cctcttcttcctggctccctttcctccggttccctgaagagcctagcttt
ccacgggcaatttaggagttgcctcaggccacagtcttactttcctaact
aattaaaaactgagggttaggggctggccagattgctgagtggttagagc
tctgactgctcttacagaggacccccatgtgattcccagaactcatggca
gctcgctcacaactgtctataatttcagttcctggggatcagtgccacca
gacatttacacattttacatggtgcacagacaggcatacacaagaaaaaa
ctagatttaggtagaatgtactctttgtacaccttttagaattctagcac
tcaggaggcagagttaaaagtttctctgagttcaaagccagcctgatcta
cttgttggattccaggatagacagagctatagagtgagactctgtctcaa
aaacaacaacaacaataaaaacctggtttcatctgagcctattaacctaa
gtacctgaga
gaattctgtggctctgtagcaagacagcctaacctacttgacaggtttca
ggctactgacaaatcatctcaaaaagacaagtaaaaggtgccagaggaaa
aatacccaccaaggttgccctgttttctgccatactcaaacaccacagga
gtgggcgcacccaggcacacgtgcgcgcacactcacacacacacacagat
acacacacacacacacacacacacacacaaacacacacaaacacacacac
acacacacacacacacacacacagaggagttggagggatagctgagcaat
taataacatggagttgagatttcaaacacatttgggaggctcacaactct
tttaactctaggggatttgatgcctttggtctttgaggacactattttta
agaagtatccatacacacatatttatacacataattaaaaataagataaa
agttaaagacaaagaatgaagaaagaaccttgctagtcacaaagagatgg
attccatctattttattcatttctggttctatacaaatgaatagatcaca
aaccttctgcatatagtctttctgcgaggaaaactgcatctcggtaagca
tgtggttttagcgcttggcatatagcagcctgtaagtagagtaagcacat
aaatatacacacgtgactctggcaccgtcttgaacattatattctatgtt
agtatccggaatttgtcggattatttctcattatttatcaactttggtat
gtgcatgtgtgtgagcagtgagcatgtccgcgtggaatggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_82611988_82612549
seq2: B6Ng01-161L24.b_245_804

seq1  TTGACTTATTATCTCCATTCCATGGGAACAAAGCAAGATTGAAACTGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTATTATCTCCATTCCATGGGAACAAAGCAAGATTGAAACTGGTA  50

seq1  CCTCTTCTTCCTGGCTCCCTTTCCTCCGGTTCCCTGAAGAGCCTAGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTTCCTGGCTCCCTTTCCTCCGGTTCCCTGAAGAGCCTAGCTTT  100

seq1  CCACGGGCAATTTAGGAGTTGCCTCAGGCCACAGTCTTACTTTCCTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGGCAATTTAGGAGTTGCCTCAGGCCACAGTCTTACTTTCCTAACT  150

seq1  AATTAAGAACTGAGGGTTAGGGGCTGGCCAGATTGCTGAGTGGTTAGAGC  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAACTGAGGGTTAGGGGCTGGCCAGATTGCTGAGTGGTTAGAGC  200

seq1  TCTGACTGCTCTTACAGAGGACCCCCATGTGATTCCCAGAACTCATGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTGCTCTTACAGAGGACCCCCATGTGATTCCCAGAACTCATGGCA  250

seq1  GCTCGCTCACAACTGTCTATAATTTCAGTTCCTGGGGATCAGTGCCACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCTCACAACTGTCTATAATTTCAGTTCCTGGGGATCAGTGCCACCA  300

seq1  GACATTTACACA-TTTACATGGTGCACAGACAGGCATACACAAGAAAAAA  349
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GACATTTACACATTTTACATGGTGCACAGACAGGCATACACAAGAAAAAA  350

seq1  CTAGATTTAGGTAGAATGTACTC-TTGTACACC-TTTAGAATTCTAGCAC  397
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  CTAGATTTAGGTAGAATGTACTCTTTGTACACCTTTTAGAATTCTAGCAC  400

seq1  TCAGGAGGCAGAGTTAAAAGTTTCTCTGAGTTCAAAGCCAGCCTGATCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGGCAGAGTTAAAAGTTTCTCTGAGTTCAAAGCCAGCCTGATCTA  450

seq1  CTTGTTGGATTCCAGGATAGACAGAGCTATAGAGTGAGACTCTGTCTC-A  496
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTGTTGGATTCCAGGATAGACAGAGCTATAGAGTGAGACTCTGTCTCAA  500

seq1  AAACAACAACAACAATAAAAACCTGG-TTCATCTGAGCCTA-TAACCTAA  544
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  AAACAACAACAACAATAAAAACCTGGTTTCATCTGAGCCTATTAACCTAA  550

seq1  GTACCAGAGAGCCTGAGA  562
      ||||| ||||        
seq2  GTACCTGAGA--------  560

seq1: chr11_104397355_104398141
seq2: B6Ng01-161L24.g_72_853

seq1  GAATTCTGCGGCTCAGTAGCAAGACAGCCTAACCTACTTGACAGGTTTCA  50
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGCTCTGTAGCAAGACAGCCTAACCTACTTGACAGGTTTCA  50

seq1  GGCTACTGACAAATCATCTCAAAAAGACAAGTAAAAGGTGCCAGAGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTGACAAATCATCTCAAAAAGACAAGTAAAAGGTGCCAGAGGAAA  100

seq1  AATACCCACCAAGGTTGCCCTGTTTTCTGCCATACTCAAACACCACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCACCAAGGTTGCCCTGTTTTCTGCCATACTCAAACACCACAGGA  150

seq1  GTGGGCGCACCCAGGCACACGTGCGCGCACACTCACACACACACACAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCGCACCCAGGCACACGTGCGCGCACACTCACACACACACACAGAT  200

seq1  ACACACACACACACACACACACACACACAAACACACACAAACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACAAACACACACAAACACACACAC  250

seq1  ACACACACACACACACACACACAGAGGAGTTGGAGGGATAGCTGAGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACAGAGGAGTTGGAGGGATAGCTGAGCAAT  300

seq1  TAAGAACATGGAGTTGAGATTTCAAACACATTTGGGAGGCTCACAACTCT  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACATGGAGTTGAGATTTCAAACACATTTGGGAGGCTCACAACTCT  350

seq1  TTTAACTCTAGGGGATTTGATGCCTTTGGTCTTTGAGGACACTATTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCTAGGGGATTTGATGCCTTTGGTCTTTGAGGACACTATTTTTA  400

seq1  AGAAGTATCCATACACACATATATATACACATAATTAAAAATAAGAAAAA  450
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  AGAAGTATCCATACACACATATTTATACACATAATTAAAAATAAGATAAA  450

seq1  AGTTAAAGACAAAGAATGAAGAAAGAACCTTGCTAGTCACAAAGTGATGG  500
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTTAAAGACAAAGAATGAAGAAAGAACCTTGCTAGTCACAAAGAGATGG  500

seq1  AATTCCATCTATTTTATTCATTTCTGGTTCTATACAAATGAATAGATCAC  550
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATTCCATCTATTTTATTCATTTCTGGTTCTATACAAATGAATAGATCAC  549

seq1  AAACCTTCTGCATATAGTCGTTCTGCGAGGAAAACTGCATCTCGGTAAGC  600
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAACCTTCTGCATATAGTCTTTCTGCGAGGAAAACTGCATCTCGGTAAGC  599

seq1  ATAGTGG-TTTAGCGCTTGCCATATAGCAGCCTGTAAGTAGAG-AAGCAC  648
      || |||| ||||||||||| ||||||||||||||||||||||| ||||||
seq2  AT-GTGGTTTTAGCGCTTGGCATATAGCAGCCTGTAAGTAGAGTAAGCAC  648

seq1  ATAAATATACACACAGTGACTCTGGCACCGTCTTGAACATAATATTC-AA  697
      |||||||||||||| ||||||||||||||||||||||||| |||||| | 
seq2  ATAAATATACACAC-GTGACTCTGGCACCGTCTTGAACATTATATTCTAT  697

seq1  GTTAGTACTCGGAATTTGTTTGTATTATTTCTTCATTTATTTATTTACTT  747
      |||||||  ||||||||| | | |||||||| ||| ||||||||  ||||
seq2  GTTAGTATCCGGAATTTG-TCGGATTATTTC-TCA-TTATTTATCAACTT  744

seq1  TGGTATGTGCATGTGTGTGTAGCAGGTGGGCATGTGCGCG  787
      ||||||||||||||||||| |||| ||| |||||| ||||
seq2  TGGTATGTGCATGTGTGTG-AGCA-GTGAGCATGTCCGCG  782