BAC Information

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BAC

Clone NameB6Ng01-162F14
Chromosome11 (Build37)
Map Location 83,155,785 - 83,291,551
singlet/doubletdoublet
Overlap geneAp2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15
Upstream geneTmem132e, Cct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12
Downstream geneOTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162F14.bB6Ng01-162F14.g
ACCDH955209DH955210
length1,1451,156
definitionDH955209|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F14, 5' end.DH955210|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,290,412 - 83,291,551)(83,155,785 - 83,156,869)
sequence
gaattctaggcaagcaagtaaacagcacccattcatagcctttgcattag
ctatgtctccaagttccttggtgtttgagttcctgtcctgacttttccca
taatgaacattaatggaagtgtaagccaaacaaaccctttactccccaag
ttgctttagtcctgatgtttcatcacagcaatagtgattctaagacaaac
aaccaagtgtgtccaacctgtgatccaagcactggaattataggcatgag
ccacaaatcctgacttatgaattttcttttatcatacacactagctgcac
gcacactactccattttaggtgatgtttgcctggttactctttccatctt
accctccaacatgtgtttaatgtcctcaactgctgaacagcatttatcta
ggtactttaacattatgaacacctttgtgatgtaagtggattgtttttgt
ttttacatgtacctaacatcttaaattagaatttttctatctaccgtagg
ttttcttttccttttaactcctttcctactattacattttctttatccac
aattttactattatttatattttatttctgtggcctcataactaaatttt
tgcatttttcctggcaaaatttacaattaccagcctccattaaaacatac
tttactatcttaatgtcaaccaaagcttttgcctttattatccttgcaat
ttttactcctcttcctttctataaattaattattttagcaaagaccagta
tgactttgaatttatctgatatcaagatcattattttccgactaaactca
ttatttattctcttaaaacctttttacatttttagttttcatccgtgtaa
aagtatgcacacatgcatgcaagagagtaagatgtaagatgcactggaag
ctggcgattccaggtaactgtggggctggtagatgttagtgcttgtagcc
aacttttggttctctgtgccaagagcagtagccatagctccagggcccct
cctaaaattgttttctatgggtattattttattatctggtatttcatagg
attggctcgtaattattcctaggcatcatgttgaactaattcttggataa
acttcacttctgctgggagagaatggctcagccgtttaagagcac
gaattcactccacagagttgacctctacgtgtgcactgtgacacatgcac
tcacacacatcacgcatccagacatatcatcatcattttttttttattaa
aataaagaacagttgaaaatctggcccagaaacaaaccactttttatacc
aaaagagcaactggaaaatgagaggctggtgcatggtcaatgattgcttt
gtactgcagagactgctttcggctgctgtttgtcacactggctgagcttt
aaccaccatcagtgattcatagttgaggaaatatgagttagagatgatgt
tgaattttgttttttaggtgcagctcacactgctcaccgccatagtgaag
ctgtttctcaagaagccatcagaaacacaggagctggtccaacaggtctt
gagcttagccacacaggtgagagagctgagagcatccgccaggctgattt
gtggtgctcccaatgggtagactcaatggtacttcttgtctcattcaagg
ctgctgctgctatagttaactccagaatgaagaacaacatggggaataaa
ggctttattagttgcatgtcctgaaccatagtccattgagggaagccaac
acaggacctcaacccagtaggaacctggaggcaggagctgatgcatatgc
catggaggagtgctgcttacaggcttgctccttgtggcttcctcaacctg
ccttcctatagaacccagaccactggttggccttttcataatcagctggg
ccttctcccaccagtcagtatttaagaaaatctgtgcctaagtctggtct
tgtggaggcattttctcaattgagtttctctctcagacgacttgagcttg
tgtcaagttgaaataaaactagccaggacatttcccaagaatgttcatct
ggggcagggtttagttctgaaaatactaaaatgatgcctcaaagcagact
ctggtcaattgtatctggcccattacagaatttagctcatctgactgaag
ctggagaaggttgctccagcagttcagagaatttggttgtttcacagaag
aactcagttttggtttctttctaagcacctcacatgtgggctccagtttc
ctataggaaatccaccttcttcttgaatctgttggcaggcttctgccaca
tggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_83290412_83291551
seq2: B6Ng01-162F14.b_51_1195 (reverse)

seq1  GTGCTCTT-AACGGCTGAGCCA-TCTCT-CCAGCCGAGTTGAAGTTTTTA  47
      |||||||| ||||||||||||| ||||| ||||| ||  |||||  ||||
seq2  GTGCTCTTAAACGGCTGAGCCATTCTCTCCCAGCAGAAGTGAAG--TTTA  48

seq1  ATCAAGAATTAGTTCAAACATGATGCCTAGGAATAATTTCGAG-CAAT-C  95
        ||||||||||||| |||||||||||||||||||||| |||| |||| |
seq2  TCCAAGAATTAGTTC-AACATGATGCCTAGGAATAATTACGAGCCAATCC  97

seq1  TATGAAATTACAGATTATAAAATAATAACCCATAGAAAACAATTTTAGGA  145
      ||||||||  ||||| |||||||||| |||||||||||||||||||||||
seq2  TATGAAATACCAGATAATAAAATAAT-ACCCATAGAAAACAATTTTAGGA  146

seq1  GGGGCCCTGGAGCTATGGCTACTGCTCTTGGCACAGAGAACC-AGAGTTG  194
      |||||||||||||||||||||||||||||||||||||||||| | |||||
seq2  GGGGCCCTGGAGCTATGGCTACTGCTCTTGGCACAGAGAACCAAAAGTTG  196

seq1  GCTACCAGCACTAACATCTTACAG-CCCACAGTTACCTGGAATCGCCAGC  243
      ||||| |||||||||||||  ||| |||||||||||||||||||||||||
seq2  GCTACAAGCACTAACATCTACCAGCCCCACAGTTACCTGGAATCGCCAGC  246

seq1  TT-CAGTGCATCTTACATCTT-CTCTCTTGCATGCATGTGTGCATACTTT  291
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCCAGTGCATCTTACATCTTACTCTCTTGCATGCATGTGTGCATACTTT  296

seq1  TACACGGATGAAAACTAAAAATGTAAAAAGGTTTTAAGAGAATAAATAAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGGATGAAAACTAAAAATGTAAAAAGGTTTTAAGAGAATAAATAAT  346

seq1  GAGTTTAGTCGGAAAATAATGATCTTGATATCAGATAAATTCAAAGTCAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAGTCGGAAAATAATGATCTTGATATCAGATAAATTCAAAGTCAT  396

seq1  ACTGGTCTTTGCTAAAATAATTAATTTATAGAAAGGAAGAGGAGTAAAAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCTTTGCTAAAATAATTAATTTATAGAAAGGAAGAGGAGTAAAAA  446

seq1  TTGCAAGGATAATAAAGGCAAAAGCTTTGGTTGACATTAAGATAGTAAAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGGATAATAAAGGCAAAAGCTTTGGTTGACATTAAGATAGTAAAG  496

seq1  TATGTTTTAATGGAGGCTGGTAATTGTAAATTTTGCCAGGAAAAATGCAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTAATGGAGGCTGGTAATTGTAAATTTTGCCAGGAAAAATGCAA  546

seq1  AAATTTAGTTATGAGGCCACAGAAATAAAATATAAATAATAGTAAAATTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGTTATGAGGCCACAGAAATAAAATATAAATAATAGTAAAATTG  596

seq1  TGGATAAAGAAAATGTAATAGTAGGAAAGGAGTTAAAAGGAAAAGAAAAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAAGAAAATGTAATAGTAGGAAAGGAGTTAAAAGGAAAAGAAAAC  646

seq1  CTACGGTAGATAGAAAAATTCTAATTTAAGATGTTAGGTACATGTAAAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGTAGATAGAAAAATTCTAATTTAAGATGTTAGGTACATGTAAAAA  696

seq1  CAAAAACAATCCACTTACATCACAAAGGTGTTCATAATGTTAAAGTACCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAATCCACTTACATCACAAAGGTGTTCATAATGTTAAAGTACCT  746

seq1  AGATAAATGCTGTTCAGCAGTTGAGGACATTAAACACATGTTGGAGGGTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATGCTGTTCAGCAGTTGAGGACATTAAACACATGTTGGAGGGTA  796

seq1  AGATGGAAAGAGTAACCAGGCAAACATCACCTAAAATGGAGTAGTGTGCG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAAAGAGTAACCAGGCAAACATCACCTAAAATGGAGTAGTGTGCG  846

seq1  TGCAGCTAGTGTGTATGATAAAAGAAAATTCATAAGTCAGGATTTGTGGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTAGTGTGTATGATAAAAGAAAATTCATAAGTCAGGATTTGTGGC  896

seq1  TCATGCCTATAATTCCAGTGCTTGGATCACAGGTTGGACACACTTGGTTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCTATAATTCCAGTGCTTGGATCACAGGTTGGACACACTTGGTTG  946

seq1  TTTGTCTTAGAATCACTATTGCTGTGATGAAACATCAGGACTAAAGCAAC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTAGAATCACTATTGCTGTGATGAAACATCAGGACTAAAGCAAC  996

seq1  TTGGGGAGTAAAGGGTTTGTTTGGCTTACACTTCCATTAATGTTCATTAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGTAAAGGGTTTGTTTGGCTTACACTTCCATTAATGTTCATTAT  1046

seq1  GGGAAAAGTCAGGACAGGAACTCAAACACCAAGGAACTTGGAGACATAGC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGTCAGGACAGGAACTCAAACACCAAGGAACTTGGAGACATAGC  1096

seq1  TAATGCAAAGGCTATGAATGGGTGCTGTTTACTTGCTTGCCTAGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAAAGGCTATGAATGGGTGCTGTTTACTTGCTTGCCTAGAATTC  1145

seq1: chr11_83155785_83156869
seq2: B6Ng01-162F14.g_67_1222

seq1  GAATTCACTCCACAGAGTTGACCTCTACGTGTGCACTGTGACACATGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCACAGAGTTGACCTCTACGTGTGCACTGTGACACATGCAC  50

seq1  TCACACACATCACGCATCCAGACATATCATCATCATTTTTTTTTTATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACATCACGCATCCAGACATATCATCATCATTTTTTTTTTATTAA  100

seq1  AATAAAGAACAGTTGAAAATCTGGCCCAGAAACAAACCACTTTTTATACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAACAGTTGAAAATCTGGCCCAGAAACAAACCACTTTTTATACC  150

seq1  AAAAGAGCAACTGGAAAATGAGAGGCTGGTGCATGGTCAATGATTGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCAACTGGAAAATGAGAGGCTGGTGCATGGTCAATGATTGCTTT  200

seq1  GTACTGCAGAGACTGCTTTCGGCTGCTGTTTGTCACACTGGCTGAGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCAGAGACTGCTTTCGGCTGCTGTTTGTCACACTGGCTGAGCTTT  250

seq1  AACCACCATCAGTGATTCATAGTTGAGGAAATATGAGTTAGAGATGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCATCAGTGATTCATAGTTGAGGAAATATGAGTTAGAGATGATGT  300

seq1  TGAATTTTGTTTTTTAGGTGCAGCTCACACTGCTCACCGCCATAGTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTGTTTTTTAGGTGCAGCTCACACTGCTCACCGCCATAGTGAAG  350

seq1  CTGTTTCTCAAGAAGCCATCAGAAACACAGGAGCTGGTCCAACAGGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTCAAGAAGCCATCAGAAACACAGGAGCTGGTCCAACAGGTCTT  400

seq1  GAGCTTAGCCACACAGGTGAGAGAGCTGAGAGCATCCGCCAGGCTGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAGCCACACAGGTGAGAGAGCTGAGAGCATCCGCCAGGCTGATTT  450

seq1  GTGGTGCTCCCAATGGGTAGACTCAATGGTACTTCTTGTCTCATTCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCTCCCAATGGGTAGACTCAATGGTACTTCTTGTCTCATTCAAGG  500

seq1  CTGCTGCTGCTATAGTTAACTCCAGAATGAAGAACAACATGGGGAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGCTATAGTTAACTCCAGAATGAAGAACAACATGGGGAATAAA  550

seq1  GGCTTTATTAGTTGCATGTCCTGAACCATAGTCCATTGAGGGAAGCCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTATTAGTTGCATGTCCTGAACCATAGTCCATTGAGGGAAGCCAAC  600

seq1  ACAGGACCTCAACCCAGTAGGAACCTGGAGGCAGGAGCTGATGCATATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACCTCAACCCAGTAGGAACCTGGAGGCAGGAGCTGATGCATATGC  650

seq1  CATGGAGGAGTGCTGCTTACAGGCTTGCTCCTTGTGGCTTCCTCAACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGGAGTGCTGCTTACAGGCTTGCTCCTTGTGGCTTCCTCAACCTG  700

seq1  CCTTCCTATAGAACCCAGACCACTGGTTGGCCTTTTTCATAATCAGCTGG  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCTTCCTATAGAACCCAGACCACTGGTTGGCC-TTTTCATAATCAGCTGG  749

seq1  GCCTTCTCCCACCAGTCAGTATTTAAGAAAATCTGTGCCTAAGTCTGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTCCCACCAGTCAGTATTTAAGAAAATCTGTGCCTAAGTCTGGTC  799

seq1  TTGTGGAGGCATTTTCTCAATTGAGTTTCTCTCTCAGACGACTTGAGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAGGCATTTTCTCAATTGAGTTTCTCTCTCAGACGACTTGAGCTT  849

seq1  GTGTCAAGTTGAAATAAAACTAGCCAGGACATTTCCCAAGAAGGTTCATC  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTGTCAAGTTGAAATAAAACTAGCCAGGACATTTCCCAAGAATGTTCATC  899

seq1  TGGGGCAGGGTTTAGTTCTGAAAATACTAAAATGATGCCTCAAAGCAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGGGCAGGGTTTAGTTCTGAAAATACTAAAATGATGCCTCAAAGCAGAC  949

seq1  TCTGTTCAATTGTATCTGG-CCAATACAGATTTTAGCTCATCTGACTGAG  999
      |||| |||||||||||||| ||| |||||| |||||||||||||||||| 
seq2  TCTGGTCAATTGTATCTGGCCCATTACAGAATTTAGCTCATCTGACTGAA  999

seq1  GCTGGAG-AGGTGGCT-CAGCAGTTCAGAGAATTTGTTGTTTTCACAG-A  1046
      ||||||| |||| ||| ||||||||||||||||||| |  |||||||| |
seq2  GCTGGAGAAGGTTGCTCCAGCAGTTCAGAGAATTTGGTTGTTTCACAGAA  1049

seq1  GAACCCAGTTTTGG-TTCTTTCTTAGCACC-CACATGGTGG---------  1085
      |||| ||||||||| |||||||| |||||| ||||| ||||         
seq2  GAACTCAGTTTTGGTTTCTTTCTAAGCACCTCACAT-GTGGGCTCCAGTT  1098

seq1  --------------------------------------------------  1085
                                                        
seq2  TCCTATAGGAAATCCACCTTCTTCTTGAATCTGTTGGCAGGCTTCTGCCA  1148

seq1  --------  1085
              
seq2  CATGGTGG  1156