BAC Information

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BAC

Clone NameB6Ng01-162G08
Chromosome11 (Build37)
Map Location 69,640,761 - 69,838,524
singlet/doubletdoublet
Overlap geneNlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4
Upstream geneNdel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik
Downstream geneAsgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162G08.bB6Ng01-162G08.g
ACCDH955244DH955245
length1,150863
definitionDH955244|Mus musculus domesticus DNA, BAC clone: B6Ng01-162G08, 5' end.DH955245|Mus musculus domesticus DNA, BAC clone: B6Ng01-162G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,640,761 - 69,641,919)(69,837,663 - 69,838,524)
sequence
gaattccccctgttgcatgaggatctcggggtcatcagggactacgtcgc
cgtccaccacaggcccaaaggcaatgtggtagctggagagaagggggcaa
ggtctcaccatccggttgctggcctcccctgggcccatggtctcctaagc
cacacataggtagctccctctgcctagaagacctttttccatgacccata
gactcacagagtcagtccttcagggcattctggcccctcaggatatcctc
ctaaagcattctgtgaaaccctgtgcttgatctatgtggtatggtgacct
ccacataaggagggctgctaaccaacagccactaggggtttctgaagccc
acttctccttgcccagttagattgcctccaagaacctctcacctcaacct
ccttggaaccagttaggaaagcagagacctggacccagccctctcccacc
cccataccgggcaggctgtacatcctggtccactagctcccgggaagact
tccggcgcagacactccacagcttcagtgctgtcttctcggtcacagccc
actttggccgccagcagccgcgtgtacttgagcggctggtagttgacaga
ccagctggaaatggcagtaccactttgagcaatggccttctggaacagtc
ctggtgggacaggcagacctcaggctaggctgttatcagccaaaggaagg
agaggattggtagggtccaggctttgggaagggaaggcaggtgaggaggc
tgctggtaccttctgagtggtgggaaaggatcagcaagttgacacaggag
gcccctgcaccagacccaaagatagtgatgcgttcagggtcacctccaaa
gtgggcaatgttttcactgagccagcgcagggcctggatctggtccagga
gcccatagttgccttttgcagcctgttcaccagttctgaagaaacctagg
ggtagaagaaggtactccctggagtgttacagcatccttgcctctcagcc
aggggctaatgcagcgtaagtctatcagcgtacttggagacctgcccacc
agactgcttccagaccttgccctccagagttgcctgccaccctcacggag
ccacccaataacggtaggtggagtttgactacgatgattttgccatggca

gaattccctgcaagataaattaaacaggagcaaaacttgcacctcccaag
ttttggagactggggagaaccagagcccagtgtcccttcatggtcacccc
acttaacaggaaacttctaaatccgaggaacggccaggcgcactaaagaa
aatggagacgcgaagggagacaagcatttattctagacaagaaccaaaga
agatcttttcttatggtgatccccatatctccctgttccatccttatggt
ggggagggacttacatctgacactaaagaaaaaggctttggagactgggg
gatgacgtgtggggactgaggaccacagaatggagaaccagagttctcac
aatgtaatggaagagttaaggcctatggtcagtcctcggaacgttacagc
cctcaggactctgcagggtagaacaactctgacgctgcaaacaccgggct
gggaggtcgacccctctcagtcctggattacaaagcagctgaaaccaaac
aggaaggaggacacatctctaacccactggtatgcagggccctgactagc
aggcactctatgctactggggcaagtctgaaccccccatatattaggatt
tgaaacaaggacaagacctgagggtgggtcacagatgatggccctgtggt
tcctccccgtaccttcaaagccccagctgcacagaatgacctggaaccgg
ggcttgcaccccaaaaatacaggggtgtgggttaaagtggataacaagag
gtacaacccactgcgtctgttttcaagaagttgcgacccagagaccccac
gccaagctgagggaagagcaacagcacttgaagctcttgagattgagggg
ttgggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69640761_69641919
seq2: B6Ng01-162G08.b_48_1197

seq1  GAATTCCCCCTGTTGCATGAGGATCTCGGGGTCATCAGGGACTACGTCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCTGTTGCATGAGGATCTCGGGGTCATCAGGGACTACGTCGC  50

seq1  CGTCCACCACAGGCCCAAAGGCAATGTGGTAGCTGGAGAGAAGGGGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCACCACAGGCCCAAAGGCAATGTGGTAGCTGGAGAGAAGGGGGCAA  100

seq1  GGTCTCACCATCCGGTTGCTGGCCTCCCCTGGGCCCATGGTCTCCTAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCACCATCCGGTTGCTGGCCTCCCCTGGGCCCATGGTCTCCTAAGC  150

seq1  CACACATAGGTAGCTCCCTCTGCCTAGAAGACCTTTTTCCATGACCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAGGTAGCTCCCTCTGCCTAGAAGACCTTTTTCCATGACCCATA  200

seq1  GACTCACAGAGTCAGTCCTTCAGGGCATTCTGGCCCCTCAGGATATCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACAGAGTCAGTCCTTCAGGGCATTCTGGCCCCTCAGGATATCCTC  250

seq1  CTAAAGCATTCTGTGAAACCCTGTGCTTGATCTATGTGGTATGGTGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCATTCTGTGAAACCCTGTGCTTGATCTATGTGGTATGGTGACCT  300

seq1  CCACATAAGGAGGGCTGCTAACCAACAGCCACTAGGGGTTTCTGAAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAAGGAGGGCTGCTAACCAACAGCCACTAGGGGTTTCTGAAGCCC  350

seq1  ACTTCTCCTTGCCCAGTTAGATTGCCTCCAAGAACCTCTCACCTCAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCTTGCCCAGTTAGATTGCCTCCAAGAACCTCTCACCTCAACCT  400

seq1  CCTTGGAACCAGTTAGGAAAGCAGAGACCTGGACCCAGCCCTCTCCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAACCAGTTAGGAAAGCAGAGACCTGGACCCAGCCCTCTCCCACC  450

seq1  CCCATACCGGGCAGGCTGTACATCCTGGTCCACTAGCTCCCGGGAAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACCGGGCAGGCTGTACATCCTGGTCCACTAGCTCCCGGGAAGACT  500

seq1  TCCGGCGCAGACACTCCACAGCTTCAGTGCTGTCTTCTCGGTCACAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCGCAGACACTCCACAGCTTCAGTGCTGTCTTCTCGGTCACAGCCC  550

seq1  ACTTTGGCCGCCAGCAGCCGCGTGTACTTGAGCGGCTGGTAGTTGACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGCCGCCAGCAGCCGCGTGTACTTGAGCGGCTGGTAGTTGACAGA  600

seq1  CCAGCTGGAAATGGCAGTACCACTTTGAGCAATGGCCTTCTGGAACAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGGAAATGGCAGTACCACTTTGAGCAATGGCCTTCTGGAACAGTC  650

seq1  CTGGTGGGACAGGCAGACCTCAGGCTAGGCTGTTATCAGCCAAAGGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGGACAGGCAGACCTCAGGCTAGGCTGTTATCAGCCAAAGGAAGG  700

seq1  AGAGGATTGGTAGGGTCCAGGCTTTGGGAAGGGAAGGCAGGTGAGGAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATTGGTAGGGTCCAGGCTTTGGGAAGGGAAGGCAGGTGAGGAGGC  750

seq1  TGCTGGTACCTTCTGAGTGGTGGGAAAGGATCAGCAAGTTGACACAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTACCTTCTGAGTGGTGGGAAAGGATCAGCAAGTTGACACAGGAG  800

seq1  GCCCCTGCACCAGACCCAAAGATAGTGATGCGTTCAGGGTCACCTCCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGCACCAGACCCAAAGATAGTGATGCGTTCAGGGTCACCTCCAAA  850

seq1  GTGGGCAATGTTTTCACTGAGCCAGCGCAGGGCCTGGATCTGGTCCAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAATGTTTTCACTGAGCCAGCGCAGGGCCTGGATCTGGTCCAGGA  900

seq1  GCCCATAGTTGCCTTTTGCAGCCTGGTCACCAGTGCTGAGAAAACCTAGG  950
      ||||||||||||||||||||||||| |||||||| ||||  |||||||||
seq2  GCCCATAGTTGCCTTTTGCAGCCTGTTCACCAGTTCTGAAGAAACCTAGG  950

seq1  GGTAGAAGAAGGGTACTCCCTGGAGGTGTCACAGCATCCTTGCCTCTCAG  1000
      |||||||||| ||||||||||||| |||| ||||||||||||||||||||
seq2  GGTAGAAGAA-GGTACTCCCTGGA-GTGTTACAGCATCCTTGCCTCTCAG  998

seq1  CCAGGGGCTTAATGCAGCGTAAGTCTATCAGCGTACTTGGGAGGACCCTG  1050
      |||||||| ||||||||||||||||||||||||||||| ||||   ||||
seq2  CCAGGGGC-TAATGCAGCGTAAGTCTATCAGCGTACTT-GGAG--ACCTG  1044

seq1  CCCACCAGGACTGCTTCCCAGACCTTGCCCCCCAAGAGTTGGCTGCCCAC  1100
      ||||||| |||||||| ||||||||||||| || ||||||| ||| ||||
seq2  CCCACCA-GACTGCTT-CCAGACCTTGCCCTCC-AGAGTTGCCTG-CCAC  1090

seq1  CCTCACCGAG-CACCCCAAGACGGTA-GTTGAGTGTGACTACGATGACAT  1148
      |||||| ||| ||||| |  |||||| || |||| ||||||||||||  |
seq2  CCTCACGGAGCCACCCAATAACGGTAGGTGGAGTTTGACTACGATGATTT  1140

seq1  TGCCATAGGCA  1159
      |||||| ||||
seq2  TGCCAT-GGCA  1150

seq1: chr11_69837663_69838524
seq2: B6Ng01-162G08.g_69_931 (reverse)

seq1  CCCCCA-CCCCAACCCCTCAATCTCAAGAGCTTCAAGTGCTGTTGCTCTT  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCCAACCCCTCAATCTCAAGAGCTTCAAGTGCTGTTGCTCTT  50

seq1  CCCTCAGCTTGGCGTGGGGTCTCTGGGTCGCAACTTCTTGAAAACAGACG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCTTGGCGTGGGGTCTCTGGGTCGCAACTTCTTGAAAACAGACG  100

seq1  CAGTGGGTTGTACCTCTTGTTATCCACTTTAACCCACACCCCTGTATTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTTGTACCTCTTGTTATCCACTTTAACCCACACCCCTGTATTTT  150

seq1  TGGGGTGCAAGCCCCGGTTCCAGGTCATTCTGTGCAGCTGGGGCTTTGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGCAAGCCCCGGTTCCAGGTCATTCTGTGCAGCTGGGGCTTTGAA  200

seq1  GGTACGGGGAGGAACCACAGGGCCATCATCTGTGACCCACCCTCAGGTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACGGGGAGGAACCACAGGGCCATCATCTGTGACCCACCCTCAGGTCT  250

seq1  TGTCCTTGTTTCAAATCCTAATATATGGGGGGTTCAGACTTGCCCCAGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTGTTTCAAATCCTAATATATGGGGGGTTCAGACTTGCCCCAGTA  300

seq1  GCATAGAGTGCCTGCTAGTCAGGGCCCTGCATACCAGTGGGTTAGAGATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAGTGCCTGCTAGTCAGGGCCCTGCATACCAGTGGGTTAGAGATG  350

seq1  TGTCCTCCTTCCTGTTTGGTTTCAGCTGCTTTGTAATCCAGGACTGAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCCTTCCTGTTTGGTTTCAGCTGCTTTGTAATCCAGGACTGAGAG  400

seq1  GGGTCGACCTCCCAGCCCGGTGTTTGCAGCGTCAGAGTTGTTCTACCCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGACCTCCCAGCCCGGTGTTTGCAGCGTCAGAGTTGTTCTACCCTG  450

seq1  CAGAGTCCTGAGGGCTGTAACGTTCCGAGGACTGACCATAGGCCTTAACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCCTGAGGGCTGTAACGTTCCGAGGACTGACCATAGGCCTTAACT  500

seq1  CTTCCATTACATTGTGAGAACTCTGGTTCTCCATTCTGTGGTCCTCAGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTACATTGTGAGAACTCTGGTTCTCCATTCTGTGGTCCTCAGTC  550

seq1  CCCACACGTCATCCCCCAGTCTCCAAAGCCTTTTTCTTTAGTGTCAGATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACGTCATCCCCCAGTCTCCAAAGCCTTTTTCTTTAGTGTCAGATG  600

seq1  TAAGTCCCTCCCCACCATAAGGATGGAACAGGGAGATATGGGGATCACCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCCTCCCCACCATAAGGATGGAACAGGGAGATATGGGGATCACCA  650

seq1  TAAGAAAAGATCTTCTTTGGTTCTTGTCTAGAATAAATGCTTGTCTCCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAGATCTTCTTTGGTTCTTGTCTAGAATAAATGCTTGTCTCCCT  700

seq1  TCGCGTCTCCATTTTCTTTAGTGCGCCTGGCCGTTCCTCGGATTTAGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCGTCTCCATTTTCTTTAGTGCGCCTGGCCGTTCCTCGGATTTAGAAG  750

seq1  TTTCCTGTTAAGTGGGGTGACCATGAAGGGACACTGGGCTCTGGTTCTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTTAAGTGGGGTGACCATGAAGGGACACTGGGCTCTGGTTCTCC  800

seq1  CCAGTCTCCAAAACTTGGGAGGTGCAAGTTTTGCTCCTGTTTAATTTATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCCAAAACTTGGGAGGTGCAAGTTTTGCTCCTGTTTAATTTATC  850

seq1  TTGCAGGGAATTC  862
      |||||||||||||
seq2  TTGCAGGGAATTC  863