BAC Information

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BAC

Clone NameB6Ng01-162I12
Chromosome11 (Build37)
Map Location 121,598,676 - 121,599,712
singlet/doubletsinglet
Overlap genenone
Upstream geneHmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl
Downstream genePtchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162I12.bB6Ng01-162I12.g
ACCDH955348DH955349
length1,029579
definitionDH955348|Mus musculus domesticus DNA, BAC clone: B6Ng01-162I12, 5' end.DH955349|Mus musculus domesticus DNA, BAC clone: B6Ng01-162I12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactttggaaatgaggtgaatgtagtggtagtgctggacccagga
tagccagaagcagggagggtcttgctttcctgcccctctgcttggggtca
gagtcagtgctttctctgtgtggtgagccaggtcagtatcctcatgcctg
aggactcatgaacccagagaaggacatggaggcataaattggcctttggt
ggtagagacaagccctgggcccagggaactgtggcaagggtcacccgaag
gtaggcctgactgggcccgatttctccattcagtctcttgttttgtcata
aaacatgagatgtatgaaagtctcagagaagacttctcaggtttgaaatg
tgtcttcttcccaacagtgaggagagctggagggctctgtgctgtattat
atcctggccagcagttcagaggagcaggtggcctggcatggtttccacct
ctgtcactagaagggtcagtggatagagctctggcaggcaccaaagggcc
ccagcatctttgtctcccctataggggcgttccttctggaacgtggcctc
tctgacctggacagttacagcccatggcagcacttactatgccttgactt
tgagggtctttgtgcctaaggtatgagggttggctccatgttccttgggg
aatcagtcctgtctaaaaacatcaatggtggacagtgtgacacttgccag
ggttcagaggttcatatcctagtttgttgactaacttcagattttccttc
ctcccagtaagtaccaccctctgaactgtcttctgggggagataattaga
gaggctttggtaagtcacacaggactctgcttatactaggtaccaccctc
aagctgttcccctttgaacaagttgactggtttcttctggtcctccgttc
atggaagcaggaagtagatacctgttgttgtccccttccctgtaataact
tctctgcttctgtctttgggctagtgtccaattgaatgcttcatggtaca
gatttaagctctaagctggggcaagtggg
gaattcagataggcttatgctagtcctgtggaaaaacacaaatgaaaccc
cttccggttataaggagggggtctgttcccttccaaattccattcaaagg
atctagccatcatacaaggataggggggtgtcttagttagggttttactg
ctgtgaacagacaccatgaccaaggcaagtcttataaaaaaacaacattt
aattggggctagcttacaggttcagaggttcagtccattaccatcaaggt
gggagcatggcagcatccaggttgtcatggtgcaggcagagctgagagtt
ctatgtcttcatccaaaggctgctagtggaagactgacttccaggcaact
agggtgaggatcttatgcccacactcacagtgacacacccattccaacca
ggtcacacctattccaacaaggccacacctccagatggtgccactccctg
gtccaaggatatacaaaacatcacgggggggggggggcattaattttggt
gtgtgccaatggagggagataggagatctttagatttgttgtaaaatgtc
tcatatttttatcttaatctttaattata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_121598676_121599712
seq2: B6Ng01-162I12.b_48_1076

seq1  GAATTCACTTTGGAAATGAGGTGAATGTAGTGGTAGTGCTGGACCCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGGAAATGAGGTGAATGTAGTGGTAGTGCTGGACCCAGGA  50

seq1  TAGCCAGAAGCAGGGAGGGTCTTGCTTTCCTGCCCCTCTGCTTGGGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGAAGCAGGGAGGGTCTTGCTTTCCTGCCCCTCTGCTTGGGGTCA  100

seq1  GAGTCAGTGCTTTCTCTGTGTGGTGAGCCAGGTCAGTATCCTCATGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGTGCTTTCTCTGTGTGGTGAGCCAGGTCAGTATCCTCATGCCTG  150

seq1  AGGACTCATGAACCCAGAGAAGGACATGGAGGCATAAATTGGCCTTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCATGAACCCAGAGAAGGACATGGAGGCATAAATTGGCCTTTGGT  200

seq1  GGTAGAGACAAGCCCTGGGCCCAGGGAACTGTGGCAAGGGTCACCCGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGACAAGCCCTGGGCCCAGGGAACTGTGGCAAGGGTCACCCGAAG  250

seq1  GTAGGCCTGACTGGGCCCGATTTCTCCATTCAGTCTCTTGTTTTGTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCCTGACTGGGCCCGATTTCTCCATTCAGTCTCTTGTTTTGTCATA  300

seq1  AAACATGAGATGTATGAAAGTCTCAGAGAAGACTTCTCAGGTTTGAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAGATGTATGAAAGTCTCAGAGAAGACTTCTCAGGTTTGAAATG  350

seq1  TGTCTTCTTCCCAACAGTGAGGAGAGCTGGAGGGCTCTGTGCTGTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTCCCAACAGTGAGGAGAGCTGGAGGGCTCTGTGCTGTATTAT  400

seq1  ATCCTGGCCAGCAGTTCAGAGGAGCAGGTGGCCTGGCATGGTTTCCACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGCCAGCAGTTCAGAGGAGCAGGTGGCCTGGCATGGTTTCCACCT  450

seq1  CTGTCACTAGAAGGGTCAGTGGATAGAGCTCTGGCAGGCACCAAAGGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTAGAAGGGTCAGTGGATAGAGCTCTGGCAGGCACCAAAGGGCC  500

seq1  CCAGCATCTTTGTCTCCCCTATAGGGGCGTTCCTTCTGGAACGTGGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCTTTGTCTCCCCTATAGGGGCGTTCCTTCTGGAACGTGGCCTC  550

seq1  TCTGACCTGGACAGTTACAGCCCATGGCAGCACTTACTATGCCTTGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTGGACAGTTACAGCCCATGGCAGCACTTACTATGCCTTGACTT  600

seq1  TGAGGGTCTTTGTGCCTAAGGTATGAGGGTTGGCTCCATGTTCCTTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTCTTTGTGCCTAAGGTATGAGGGTTGGCTCCATGTTCCTTGGGG  650

seq1  AATCAGTCCTGTCTAAAAACATCAATGGTGGACAGTGTGACACTTGCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTCCTGTCTAAAAACATCAATGGTGGACAGTGTGACACTTGCCAG  700

seq1  GGTTCAGAGGTTCATATCCTAGTTTGTTGACTAACTTCAGATTTTCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGAGGTTCATATCCTAGTTTGTTGACTAACTTCAGATTTTCCTTC  750

seq1  CTCCCAGTAAGTACCACCCTCTGAACTGTCTTCTGGGGGAGATAATTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTAAGTACCACCCTCTGAACTGTCTTCTGGGGGAGATAATTAGA  800

seq1  GAGGCTTTGGTAAGTCACACAGGACTCTGCTTATACTAGGTACCACCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTGGTAAGTCACACAGGACTCTGCTTATACTAGGTACCACCCTC  850

seq1  AAGCTGTTCCCCTTTGAACAAGTTGACTGGTTTC-TCTGGTCCTCCG-TC  898
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  AAGCTGTTCCCCTTTGAACAAGTTGACTGGTTTCTTCTGGTCCTCCGTTC  900

seq1  ATGGAAGCCAGGAAGTAGATACCTGTTGTATGTCCCCCTTCACTGT-ATA  947
      ||||||| ||||||||||||||||||||| ||| ||||||| |||| |||
seq2  ATGGAAG-CAGGAAGTAGATACCTGTTGT-TGT-CCCCTTCCCTGTAATA  947

seq1  ACTTCTTCTGCTTCCTGTTCTTTGTGCTAGTGTCCATTTGAATGCTTTCA  997
      ||||| ||||||| ||| |||||| ||||||||||| |||||||| ||||
seq2  ACTTC-TCTGCTT-CTG-TCTTTGGGCTAGTGTCCAATTGAATGC-TTCA  993

seq1  TGGGAACCAGATTTAGGCTCTAAGGCTTGGGGCAGGTGGG  1037
      ||| |  |||||||| ||||||||   ||||||| |||||
seq2  TGGTA--CAGATTTAAGCTCTAAG--CTGGGGCAAGTGGG  1029