BAC Information

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BAC

Clone NameB6Ng01-163M19
Chromosome11 (Build37)
Map Location 59,674,782 - 59,902,501
singlet/doubletdoublet
Overlap geneNt5m, Med9, Rasd1, Pemt
Upstream gene2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3
Downstream geneRai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163M19.bB6Ng01-163M19.g
ACCDH956294DH956295
length826943
definitionDH956294|Mus musculus domesticus DNA, BAC clone: B6Ng01-163M19, 5' end.DH956295|Mus musculus domesticus DNA, BAC clone: B6Ng01-163M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,901,683 - 59,902,501)(59,674,782 - 59,675,728)
sequence
gaattctgcccaggcaaggctggaaccgtgcagtgggcctctcgccatgg
gtgtggtgtctgaagcgcttgtgtggtctgcatgtccatggggctcttgt
gtgatgtggtcttgggatgctggccccaagacggggtgggtaggaggagc
tggggcagagagtatggtttctgctgtctgctgctctgaccgtgtggtcc
tggaaagggaggcagtcactggacctttctgagcctcagcttccggccgt
gtaaacaacagcaggctgtgagggcaagcacacctcatattagtccacag
ttactcctttgacactgggtaactttggttcctgaggttcgactatgttt
cggttcacccctcctttgaagatcctcaggctggaaggagacagcaacgc
acaactgtgtaaacagagtccaagagacacggggcagatgtcccatgaaa
gagcacagtgatggtcgaagggctgaggtgcgcatgcgctgaggtgcaca
cgctaagctcagccagagcaaaggccctgtggtggtctaaggctggacaa
tgaaatgatgtgcgtggtgggcgtggctgcagcagtttgtggcgcagaag
gaaggcacatgggtgcaaggacctacgtatagctgacccaaaaactgaat
ggcagcgctgggcctgtggggaaggataggggtgaggaaaaaggatatgg
ctgcctttggggtgcaaatggggggaagtaatctgggatatggaaggatg
ggtgtgttgcatggccgaatggctctgggtttccttcattttccaaccac
cattttttgcctctaactaagttggg
gaattcaaggctaggttaggctacagtgagatctgacatacccttcaaaa
cagaaagtctaagcaaggaaatgtaagtttgtttttctgtgtgctctttt
gtctttactggaagacatagaggtacagcagagagctttttgtgctgtag
aagatgctggctgctttctatgtggggaggataggaccaccacaccttgc
tggtttcccagacacccaggatgccgggttcccagtcgggtttccccaat
tcaggctttagatcgtcacgctgaggcttctgagtatctccacctttctc
tcttccacacaatgttgtccttggcctggagttgttatgtgccttgctta
gggaggctctcacacccactgtgggttatgtgagcagatgctgtgccagc
tgggttcatcccgaccccctgacctctcaaggctgggttcatttcagcac
aagggaatgggtgttggatctacagctcctgggagtgaaagatgggtccc
cactttgtatcagagcacctatctcccaaggacattctggactggtgggg
tcaacctcctctggggactggttagaaatagacattttcagtaacactga
ccttttgagtcagaaattctgagtgccagtgtggtctcaaccagcttgcc
agatgactctgctggacccctgcacttgagccgttgaaggtgtggtgact
gcttcaactttagctggcccaaacaattggacgtgtggacagaacaggtg
ccctgtgtgattgttaaaatctgcaggcacctgagttccttatagatact
agcatggtgtgtacacatcttccccgccccgccccaccccatgatcttga
gtacttaagccatctcaggtgattatacccgatacagtagaatgcctttg
ctgtggatgctcgacagatttgttaaagagtgatgataggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_59901683_59902501
seq2: B6Ng01-163M19.b_46_871 (reverse)

seq1  CCCAACTTAGTTAGAGGCAGAAGATGGTGGTTGG-GAATG-AGGAAA-CC  47
      ||||||||||||||||||| || |||||||||||  |||| |||||| ||
seq2  CCCAACTTAGTTAGAGGCAAAAAATGGTGGTTGGAAAATGAAGGAAACCC  50

seq1  AGAGCCATTCGGCCATGCAACACA-CCATCCTTCCATAT-CCAGATTACT  95
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  AGAGCCATTCGGCCATGCAACACACCCATCCTTCCATATCCCAGATTACT  100

seq1  T-CCCCCATTTGCACCCCAAAGGCAGCCATATCC-TTTTCCTCA-CCCTA  142
      | |||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  TCCCCCCATTTGCACCCCAAAGGCAGCCATATCCTTTTTCCTCACCCCTA  150

seq1  TCCTTCCCCACAGGCCCAGCGCTGCCATTCAGTTTTTGGGTCAGCTATAC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCCACAGGCCCAGCGCTGCCATTCAGTTTTTGGGTCAGCTATAC  200

seq1  GTAGGTCCTTGCACCCATGTGCCTTCCTTCTGCGCCACAAACTGCTGCAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCCTTGCACCCATGTGCCTTCCTTCTGCGCCACAAACTGCTGCAG  250

seq1  CCACGCCCACCACGCACATCATTTCATTGTCCAGCCTTAGACCACCACAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCACCACGCACATCATTTCATTGTCCAGCCTTAGACCACCACAG  300

seq1  GGCCTTTGCTCTGGCTGTGCTTAGCGTGTGCACCTCAGCGCATGCGCACC  342
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGCCTTTGCTCTGGCTGAGCTTAGCGTGTGCACCTCAGCGCATGCGCACC  350

seq1  TCAGCCCTTCGACCATCACTGTGCTCTTTCATGGGACATCTGCCCCGTGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCTTCGACCATCACTGTGCTCTTTCATGGGACATCTGCCCCGTGT  400

seq1  CTCTTGGACTCTGTTTACACAGTTGTGCGTTGCTGTCTCCTTCCAGCCTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGACTCTGTTTACACAGTTGTGCGTTGCTGTCTCCTTCCAGCCTG  450

seq1  AGGATCTTCAAAGGAGGGGTGAACCGAAACATAGTCGAACCTCAGGAACC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTCAAAGGAGGGGTGAACCGAAACATAGTCGAACCTCAGGAACC  500

seq1  AAAGTTACCCAGTGTCAAAGGAGTAACTGTGGACTAATATGAGGTGTGCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTACCCAGTGTCAAAGGAGTAACTGTGGACTAATATGAGGTGTGCT  550

seq1  TGCCCTCACAGCCTGCTGTTGTTTACACGGCCGGAAGCTGAGGCTCAGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCACAGCCTGCTGTTGTTTACACGGCCGGAAGCTGAGGCTCAGAA  600

seq1  AGGTCCAGTGACTGCCTCCCTTTCCAGGACCACACGGTCAGAGCAGCAGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAGTGACTGCCTCCCTTTCCAGGACCACACGGTCAGAGCAGCAGA  650

seq1  CAGCAGAAACCATACTCTCTGCCCCAGCTCCTCCTACCCACCCCGTCTTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAAACCATACTCTCTGCCCCAGCTCCTCCTACCCACCCCGTCTTG  700

seq1  GGGCCAGCATCCCAAGACCACATCACACAAGAGCCCCATGGACATGCAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGCATCCCAAGACCACATCACACAAGAGCCCCATGGACATGCAGA  750

seq1  CCACACAAGCGCTTCAGACACCACACCCATGGCGAGAGGCCCACAGCACA  792
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  CCACACAAGCGCTTCAGACACCACACCCATGGCGAGAGGCCCACTGCAC-  799

seq1  GGTTCCAGCCTTGCCTGGGCAGAATTC  819
      |||||||||||||||||||||||||||
seq2  GGTTCCAGCCTTGCCTGGGCAGAATTC  826

seq1: chr11_59674782_59675728
seq2: B6Ng01-163M19.g_67_1009

seq1  GAATTCAAGGCTAGGTTAGGCTACAGTGAGATCTGACATACCCTTCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTAGGTTAGGCTACAGTGAGATCTGACATACCCTTCAAAA  50

seq1  CAGAAAGTCTAAGCAAGGAAATGTAAGTTTGTTTTTCTGTGTGCTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTCTAAGCAAGGAAATGTAAGTTTGTTTTTCTGTGTGCTCTTTT  100

seq1  GTCTTTACTGGAAGACATAGAGGTACAGCAGAGAGCTTTTTGTGCTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTACTGGAAGACATAGAGGTACAGCAGAGAGCTTTTTGTGCTGTAG  150

seq1  AAGATGCTGGCTGCTTTCTATGTGGGGAGGATAGGACCACCACACCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTGGCTGCTTTCTATGTGGGGAGGATAGGACCACCACACCTTGC  200

seq1  TGGTTTCCCAGACACCCAGGATGCCGGGTTCCCAGTCGGGTTTCCCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCCAGACACCCAGGATGCCGGGTTCCCAGTCGGGTTTCCCCAAT  250

seq1  TCAGGCTTTAGATCGTCACGCTGAGGCTTCTGAGTATCTCCACCTTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTTTAGATCGTCACGCTGAGGCTTCTGAGTATCTCCACCTTTCTC  300

seq1  TCTTCCACACAATGTTGTCCTTGGCCTGGAGTTGTTATGTGCCTTGCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACACAATGTTGTCCTTGGCCTGGAGTTGTTATGTGCCTTGCTTA  350

seq1  GGGAGGCTCTCACACCCACTGTGGGTTATGTGAGCAGATGCTGTGCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCTCTCACACCCACTGTGGGTTATGTGAGCAGATGCTGTGCCAGC  400

seq1  TGGGTTCATCCCGACCCCCTGACCTCTCAAGGCTGGGTTCATTTCAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCATCCCGACCCCCTGACCTCTCAAGGCTGGGTTCATTTCAGCAC  450

seq1  AAGGGAATGGGTGTTGGATCTACAGCTCCTGGGAGTGAAAGATGGGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATGGGTGTTGGATCTACAGCTCCTGGGAGTGAAAGATGGGTCCC  500

seq1  CACTTTGTATCAGAGCACCTATCTCCCAAGGACATTCTGGACTGGTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTATCAGAGCACCTATCTCCCAAGGACATTCTGGACTGGTGGGG  550

seq1  TCAACCTCCTCTGGGGACTGGTTAGAAATAGACATTTTCAGTAACACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTCCTCTGGGGACTGGTTAGAAATAGACATTTTCAGTAACACTGA  600

seq1  CCTTTTGAGTCAGAAATTCTGAGTGCCAGTGTGGTCTCAGCCAGCTTGCC  650
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTTTTGAGTCAGAAATTCTGAGTGCCAGTGTGGTCTCAACCAGCTTGCC  650

seq1  AGATGACTCTGCTGGACCCCTGCACTTGAGCCGTTGAAGGTGTGGTGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACTCTGCTGGACCCCTGCACTTGAGCCGTTGAAGGTGTGGTGACT  700

seq1  GCTTCAACTTTAGCTGGCCCAAACAATTGGACGTGTGGACAGAACAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAACTTTAGCTGGCCCAAACAATTGGACGTGTGGACAGAACAGGTG  750

seq1  CCCTGGGTGATTGTTAAAATCTGCAGGCACCTGAGTTCCTTATAGATACT  800
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTGATTGTTAAAATCTGCAGGCACCTGAGTTCCTTATAGATACT  800

seq1  AGCATGGTGTGTACACATCTTCCCCCGCCCCGCCCCACCCCATGATCTTG  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCATGGTGTGTACACATCTT-CCCCGCCCCGCCCCACCCCATGATCTTG  849

seq1  AGTACTTAAGCCATCTCAGGTGATTAATACCCGATACAGTTCGAATGCCT  900
      ||||||||||||||||||||||||| ||||||||||||| | ||||||||
seq2  AGTACTTAAGCCATCTCAGGTGATT-ATACCCGATACAG-TAGAATGCCT  897

seq1  TTGCTGTGGATGCTCGACAGTTTTGTATAGAGAGTGATGATAGGAAA  947
      |||||||||||||||||||| ||||| || |||||||||||||||||
seq2  TTGCTGTGGATGCTCGACAGATTTGT-TAAAGAGTGATGATAGGAAA  943