BAC Information

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BAC

Clone NameB6Ng01-164A17
Chromosome11 (Build37)
Map Location 64,750,736 - 64,877,106
singlet/doubletdoublet
Overlap geneElac2, AU040829
Upstream geneCox10, 2810001G20Rik, EG544785, Hs3st3a1, LOC626959
Downstream gene1700086D15Rik, LOC100041790, Myocd, Map2k4, Zkscan6, Dnahc9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164A17.bB6Ng01-164A17.g
ACCDH956477DH956478
length1,1351,120
definitionDH956477|Mus musculus domesticus DNA, BAC clone: B6Ng01-164A17, 5' end.DH956478|Mus musculus domesticus DNA, BAC clone: B6Ng01-164A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,750,736 - 64,751,880)(64,875,973 - 64,877,106)
sequence
gaattctctcaagatgccctgagttccaggcaagtggatagaattgcctg
cagcttggcacatgagaagggtagtcctagacccatgctgggtgcggctg
ccttcttggtgatgttaaccagagttggctgctgggatcttagaggatca
aaaggaatttctgaaaattgtacatgagcccagaagaaagcccataaaaa
tcacttccttgtgtctgtgggtttcacccattaatagcctgccaagccca
aatacctggaaggaagcagggtgcggagagaaaggagaagctgactgggg
atgaaaaatgaatcagttgcccaattctggattcatcagcatatatctgg
ggccacagggcacacccttcctgcatataatatgatatgcatgtgagttt
ggggaaagacttcaacaatctctcctatggatgggaagacaaaatggaga
catgggatgaacctggaggacactggttctggttgtaccttagggaggag
ttatctcacatactcacctggcccctcatccttttccagtgagagctgta
ttcactttgctcttgttttgcctacataaataccaagactgaaaacagtg
cacaattgcttcctgtcccgcctctgctgacctggtcaaacaatcagaga
caagcattcctttgtgtcaagctgaatctagttacaaagtcacttgtttt
tacttcagctccaccaaggtgcaggctagattctggcaggttaagccttt
ggctccatgatgcctataggtttgcaacagccatgcccaccatcagcatg
cctttcttgcccacctaaaacactcctgccaggcattagactgagaggcc
agtcccagccccactatatctgtagctcactcccaccacttcacctcaag
cttccagcccttgcctgcctgtcccaacatttctctctgtatgatctcat
gtttgtgtgtccttctgatatatattccttcaaaggcatttcccatccat
gaatggatcacagaagagctgctcccaacatgtttttatttttgttttta
agattcatttttttatacatagtactccatagctgactttagacgcaccg
agagggttgtcgatcttattacggtggtaagaacc
gaattcattggacacaactgagtacaacacccccagtctcatgcacacac
agcagcattcgatgcaccaagatctgatagaatatactgcaaggaattct
ctcatgctcagaatgacagcatcaggggctctgcagtcatgggtctttga
ggtggaacaggttattaaaataatgaatgaggatttcaagcatgcagata
tccaaggaatccgacgcttgcactgttcacatctgcaggagatctctctc
ctcatccacccccaacagcacagctccccatggcggatgaacagaaacac
ttttgaaatatcgaacagcaaggtacagcagtaccagccactaaagagga
aggtctggggttcctgggcataacagatgtgacactctttcagccccatg
gctccaggtttttctcctcctggaaagaaagtagtagaaagaagtgtctt
tcctggagaacctgcgaggttccacggaaggacctaaggctgtgaggtcg
ttagaagcagggagtgcccatggctcaccctgaccattcagctgatgttt
ctcacctgtgcctcaaccccctctcatgctccaagcttgccatccccacc
cttaaacagaagcagactcacgctttcctaatgcatctgaagaaagccta
acctcaatcaatccaggagagaaataggatttgaaagaactggcattggg
aaggttttaggtgagccgctgggtatattttcaaatgattgggcaggcgg
tgcagccatgaaatcaaaaaggtattggtatgtgacgtttacgaggcagg
aacattcagaaatcaaaagcaaattggaagaaatgaaaacaaatgactgc
agatgcaaattctcagcccaagatgatttgggggaaatgatccagaaaat
ggagcatgagacaaagatgtggcatagacaaacttggagaattaggaagc
ggtttcagaagtcatgcttcaatggcaggggtttaagaaagagaggaaga
aattatatgatataaaaagataattcttaaacttttccgaatggaaggcc
tggagtttcttactggagggctgcctgaggcccttagaatgggaaaatta
tcagagctcggtttgggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_64750736_64751880
seq2: B6Ng01-164A17.b_48_1182

seq1  GAATTCTCTCAAGATGCCCTGAGTTCCAGGCAAGTGGATAGAATTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAAGATGCCCTGAGTTCCAGGCAAGTGGATAGAATTGCCTG  50

seq1  CAGCTTGGCACATGAGAAGGGTAGTCCTAGACCCATGCTGGGTGCGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGGCACATGAGAAGGGTAGTCCTAGACCCATGCTGGGTGCGGCTG  100

seq1  CCTTCTTGGTGATGTTAACCAGAGTTGGCTGCTGGGATCTTAGAGGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTGGTGATGTTAACCAGAGTTGGCTGCTGGGATCTTAGAGGATCA  150

seq1  AAAGGAATTTCTGAAAATTGTACATGAGCCCAGAAGAAAGCCCATAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATTTCTGAAAATTGTACATGAGCCCAGAAGAAAGCCCATAAAAA  200

seq1  TCACTTCCTTGTGTCTGTGGGTTTCACCCATTAATAGCCTGCCAAGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCCTTGTGTCTGTGGGTTTCACCCATTAATAGCCTGCCAAGCCCA  250

seq1  AATACCTGGAAGGAAGCAGGGTGCGGAGAGAAAGGAGAAGCTGACTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTGGAAGGAAGCAGGGTGCGGAGAGAAAGGAGAAGCTGACTGGGG  300

seq1  ATGAAAAATGAATCAGTTGCCCAATTCTGGATTCATCAGCATATATCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAATGAATCAGTTGCCCAATTCTGGATTCATCAGCATATATCTGG  350

seq1  GGCCACAGGGCACACCCTTCCTGCATATAATATGATATGCATGTGAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGGGCACACCCTTCCTGCATATAATATGATATGCATGTGAGTTT  400

seq1  GGGGAAAGACTTCAACAATCTCTCCTATGGATGGGAAGACAAAATGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGACTTCAACAATCTCTCCTATGGATGGGAAGACAAAATGGAGA  450

seq1  CATGGGATGAACCTGGAGGACACTGGTTCTGGTTGTACCTTAGGGAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGATGAACCTGGAGGACACTGGTTCTGGTTGTACCTTAGGGAGGAG  500

seq1  TTATCTCACATACTCACCTGGCCCCTCATCCTTTTCCAGTGAGAGCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCACATACTCACCTGGCCCCTCATCCTTTTCCAGTGAGAGCTGTA  550

seq1  TTCACTTTGCTCTTGTTTTGCCTACATAAATACCAAGACTGAAAACAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTGCTCTTGTTTTGCCTACATAAATACCAAGACTGAAAACAGTG  600

seq1  CACAATTGCTTCCTGTCCCGCCTCTGCTGACCTGGTCAAACAATCAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTGCTTCCTGTCCCGCCTCTGCTGACCTGGTCAAACAATCAGAGA  650

seq1  CAAGCATTCCTTTGTGTCAAGCTGAATCTAGTTACAAAGTCACTTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTCCTTTGTGTCAAGCTGAATCTAGTTACAAAGTCACTTGTTTT  700

seq1  TACTTCAGCTCCACCAAGGTGCAGGCTAGATTCTGGCAGGTTAAGCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAGCTCCACCAAGGTGCAGGCTAGATTCTGGCAGGTTAAGCCTTT  750

seq1  GGCTCCATGATGCCTATAGGTTTGCAACAGCCATGCCCACCATCAGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATGATGCCTATAGGTTTGCAACAGCCATGCCCACCATCAGCATG  800

seq1  CCTTTCTTGCCCACCTAAAACACTCCTGCCAGGCATTAGACTGAGAGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTGCCCACCTAAAACACTCCTGCCAGGCATTAGACTGAGAGGCC  850

seq1  AGTCCCAGCCCCACTATATCTGTAGCTCACTCCCACCACTTCACCTCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGCCCCACTATATCTGTAGCTCACTCCCACCACTTCACCTCAAG  900

seq1  CTTCCAGCCCTTGCCTGCCTGTCCCAACATTTCTCTCTGTATGATCTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCCCTTGCCTGCCTGTCCCAACATTTCTCTCTGTATGATCTCAT  950

seq1  GTTTGTGTGTCCTTCTGATATAATATTCCTTCAAAGGCATTTCCCATCCA  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTTGTGTGTCCTTCTGATAT-ATATTCCTTCAAAGGCATTTCCCATCCA  999

seq1  TGAATGGATCACAGAAGAGCTGCTCACAACCATG-TTTTATTTTTGTTTT  1049
      ||||||||||||||||||||||||| ||| |||| |||||||||||||||
seq2  TGAATGGATCACAGAAGAGCTGCTCCCAA-CATGTTTTTATTTTTGTTTT  1048

seq1  TAAAGATTCATTTATTATTATACATAAGTACTCCATAGCTGACTTTAGAC  1099
      | ||||||||||  || |||||||| ||||||||||||||||||||||||
seq2  T-AAGATTCATT--TTTTTATACAT-AGTACTCCATAGCTGACTTTAGAC  1094

seq1  GCACCAGAAGAGGGTTGTCAGATCTTATTACGGGTGGTAATGAACC  1145
      |||||   ||||||||||| ||||||||||| |||||||| |||||
seq2  GCACC--GAGAGGGTTGTC-GATCTTATTAC-GGTGGTAA-GAACC  1135

seq1: chr11_64875973_64877106
seq2: B6Ng01-164A17.g_67_1186 (reverse)

seq1  GATCCCAAACCCCGAGCTCTGATTAATGTTTTCCACTGCTGTAGGAGCTC  50
      |||||||||  |||||||||||| |   ||||||  | ||  |||  |||
seq2  GATCCCAAA--CCGAGCTCTGATAA---TTTTCCCATTCT-AAGGGCCTC  44

seq1  AGCAGGCCCTTCCAGTTAGGAACTCCAGCCCTTCCATCTGGAAAATGTTT  100
      ||   |||| |||||| || |||||||| ||||||||  ||||||   ||
seq2  AGGCAGCCC-TCCAGTAAGAAACTCCAGGCCTTCCATTCGGAAAA--GTT  91

seq1  TTAGATTATTCTTTTTATTATCATTATAATTTCTTCCTCTCTTTCTTAAA  150
      | ||| |  |||||||| ||||| ||||||||||||||||||||||||||
seq2  TAAGAATTATCTTTTTA-TATCA-TATAATTTCTTCCTCTCTTTCTTAAA  139

seq1  CCCCCTGCCATTGAAGCATGACTTCTGGAACCGCTTCCTAATTCTCCAAG  200
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  -CCCCTGCCATTGAAGCATGACTTCTGAAACCGCTTCCTAATTCTCCAAG  188

seq1  TTTGTCTATGCCACATCTTTGTCTTCATGCTCCATTTTCTGGATCATTTC  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTGTCTATGCCACATCTTTGTC-TCATGCTCCATTTTCTGGATCATTTC  237

seq1  CCCCAAATCATCTTGGGCTGAGAATTTTGCATCTGCAGTCATTTGTTTTC  300
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCCAAATCATCTTGGGCTGAGAA-TTTGCATCTGCAGTCATTTGTTTTC  286

seq1  ATTTCTTCCAATTTGCTTTTGATTTCTGAATGTTCCTGCCTCGTAAACGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCCAATTTGCTTTTGATTTCTGAATGTTCCTGCCTCGTAAACGT  336

seq1  CACATACCAATACCTTTTTGATTTCATGGCTGCACCGCCTGCCCAATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACCAATACCTTTTTGATTTCATGGCTGCACCGCCTGCCCAATCAT  386

seq1  TTGAAAATATACCCAGCGGCTCACCTAAAACCTTCCCAATGCCAGTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATATACCCAGCGGCTCACCTAAAACCTTCCCAATGCCAGTTCTT  436

seq1  TCAAATCCTATTTCTCTCCTGGATTGATTGAGGTTAGGCTTTCTTCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCTATTTCTCTCCTGGATTGATTGAGGTTAGGCTTTCTTCAGAT  486

seq1  GCATTAGGAAAGCGTGAGTCTGCTTCTGTTTAAGGGTGGGGATGGCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGGAAAGCGTGAGTCTGCTTCTGTTTAAGGGTGGGGATGGCAAGC  536

seq1  TTGGAGCATGAGAGGGGGTTGAGGCACAGGTGAGAAACATCAGCTGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCATGAGAGGGGGTTGAGGCACAGGTGAGAAACATCAGCTGAATG  586

seq1  GTCAGGGTGAGCCATGGGCACTCCCTGCTTCTAACGACCTCACAGCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGTGAGCCATGGGCACTCCCTGCTTCTAACGACCTCACAGCCTTA  636

seq1  GGTCCTTCCGTGGAACCTCGCAGGTTCTCCAGGAAAGACACTTCTTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCCGTGGAACCTCGCAGGTTCTCCAGGAAAGACACTTCTTTCTA  686

seq1  CTACTTTCTTTCCAGGAGGAGAAAAACCTGGAGCCATGGGGCTGAAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCTTTCCAGGAGGAGAAAAACCTGGAGCCATGGGGCTGAAAGAG  736

seq1  TGTCACATCTGTTATGCCCAGGAACCCCAGACCTTCCTCTTTAGTGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATCTGTTATGCCCAGGAACCCCAGACCTTCCTCTTTAGTGGCTG  786

seq1  GTACTGCTGTACCTTGCTGTTCGATATTTCAAAAGTGTTTCTGTTCATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCTGTACCTTGCTGTTCGATATTTCAAAAGTGTTTCTGTTCATCC  836

seq1  GCCATGGGGAGCTGTGCTGTTGGGGGTGGATGAGGAGAGAGATCTCCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGGGAGCTGTGCTGTTGGGGGTGGATGAGGAGAGAGATCTCCTGC  886

seq1  AGATGTGAACAGTGCAAGCGTCGGATTCCTTGGATATCTGCATGCTTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGAACAGTGCAAGCGTCGGATTCCTTGGATATCTGCATGCTTGAA  936

seq1  ATCCTCATTCATTATTTTAATAACCTGTTCCACCTCAAAGACCCATGACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATTCATTATTTTAATAACCTGTTCCACCTCAAAGACCCATGACT  986

seq1  GCAGAGCCCCTGATGCTGTCATTCTGAGCATGAGAGAATTCCTTGCAGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCCCCTGATGCTGTCATTCTGAGCATGAGAGAATTCCTTGCAGTA  1036

seq1  TATTCTATCAGATCTTGGTGCATCGAATGCTGCTGTGTGTGCATGAGACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATCAGATCTTGGTGCATCGAATGCTGCTGTGTGTGCATGAGACT  1086

seq1  GGGGGTGTTGTACTCAGTTGTGTCCAATGAATTC  1134
      ||||||||||||||||||||||||||||||||||
seq2  GGGGGTGTTGTACTCAGTTGTGTCCAATGAATTC  1120