BAC Information

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BAC

Clone NameB6Ng01-164H05
Chromosome11 (Build37)
Map Location 82,435,596 - 82,602,156
singlet/doubletdoublet
Overlap geneCct6b, Ccdc16, Lig3
Upstream geneAccn1, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e
Downstream geneRffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164H05.bB6Ng01-164H05.g
ACCDH956771DH956772
length510784
definitionDH956771|Mus musculus domesticus DNA, BAC clone: B6Ng01-164H05, 5' end.DH956772|Mus musculus domesticus DNA, BAC clone: B6Ng01-164H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,601,641 - 82,602,156)(82,435,596 - 82,436,383)
sequence
aaggctaccctgctctatatagtaagtactaggacagccaaggttatagt
gaggccctatctaaatgataataataataataataataacaacaacaata
ataataacaataataataatgatgatgagaaaggggaagaagaggaggag
gaggaaaagaaggaggaggaggaagaagaaagcagacactgcttcccaca
gctccctgcatgtgtaactgtctcacctttactccatagtctcccaatgg
gcgaagcccccaactttcacgttgtgatgaaataagagataccaaatgac
aatgtgctagatccatgaaagaaccagagccaggggattctactctacac
tgggcatgtggtttgcctaatcatatttgctagtgggacatttctctgtt
ctgtcaaatgtgatgggctcctctgccttctggggacaaaatatgggcag
aggaagaaatctgccaagcattcaatcagaactggccacataacatgcag
ggtctagtga
gaattcatgaaccaggaactgtgcagagaggactaagggctgagtagccc
ccaaagagagctggatccagagggccacctcttccggattgctggatacc
tccctgaccacatgtcaaccatcagcactgattgactctgaagaccttgc
tgctttcttaggaacagttgctggagggaggaaacaagttatctaaggca
tcctttgtctcagatctccaggtagggacttcaggatgctaagaccttct
atcacgggatatgctgagtggtaactgagaaggtccgtgctgggaggggt
ctttctcattcacaaggattgtcttcttgcctctttgcctggaaaacacc
ccccagtgagcttttacttcccgcaggagttaactataacctatgaaagg
ctgccttctgcagaaaagagtgagaatgtgagccaggtgctgcttcaggg
gactatctgttacctctgcactaaggctgccagtatctgagtcctgacag
caagaaagaattagggcttgtggagaccacaaggatgggtgaccacactt
agacagctggagcaaatcctgggatatggcctcttttccctccctgtcca
gacctaactccacttccagatgcccataagacatgctctctgtctgtctg
cctctctctctctctctctctctctctctctctctctctcacacacgctc
actctctcatcacaagtaccctctctctattggaaggcttttgacattct
cttttgtttttgtccccaggaattgttcctctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_82601641_82602156
seq2: B6Ng01-164H05.b_49_564 (reverse)

seq1  TCACTAGACCCTGCATGTTATGTGGCCAGTTCTGCTTGGATGCTTGGCAG  50
      |||||||||||||||||||||||||||||||||| ||| |||||||||||
seq2  TCACTAGACCCTGCATGTTATGTGGCCAGTTCTGATTGAATGCTTGGCAG  50

seq1  ATTTCTTCCTCTGCCCATATTTTGTCCCCAGAAGGCAGAGGAGCCCATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCCTCTGCCCATATTTTGTCCCCAGAAGGCAGAGGAGCCCATCA  100

seq1  CATTTGACAGAACAGAGAAATGTCCCACTAGCATATATGATTAGGCAAAC  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATTTGACAGAACAGAGAAATGTCCCACTAGCAAATATGATTAGGCAAAC  150

seq1  CACATGCCCAGTGTAGAGTAGAATCCCCTGGCTCTGGTTCTTTCATGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCCCAGTGTAGAGTAGAATCCCCTGGCTCTGGTTCTTTCATGGAT  200

seq1  CTAGCACATTGTCATTTGGTATCTCTTATTTCATCACAACGTGAAAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACATTGTCATTTGGTATCTCTTATTTCATCACAACGTGAAAGTTG  250

seq1  GGGGCTTCGCCCATTGGGAGACTATGGAGTAAAGGTGAGACAGTTACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTCGCCCATTGGGAGACTATGGAGTAAAGGTGAGACAGTTACACA  300

seq1  TGCAGGGAGCTGTGGGAAGCAGTGTCTGCTTTCTTCTTCCTCCTCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGAGCTGTGGGAAGCAGTGTCTGCTTTCTTCTTCCTCCTCCTCCT  350

seq1  TCTTTTCCTCCTCCTCCTCTTCTTCCCCTTTCTCATCATCATTATTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTCCTCCTCCTCTTCTTCCCCTTTCTCATCATCATTATTATTA  400

seq1  TTGTTATTATTATTGTTGTTGTTATTATTATTATTATTATTATCATTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTATTATTGTTGTTGTTATTATTATTATTATTATTATCATTTAG  450

seq1  ATAGGGCCTCACTATAACCTTGGCTGTCCTAGTACTTACTATATAGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGCCTCACTATAACCTTGGCTGTCCTAGTACTTACTATATAGAGCA  500

seq1  GGGTAGCCTTGAATTC  516
      ||||||||||||||||
seq2  GGGTAGCCTTGAATTC  516

seq1: chr11_82435596_82436383
seq2: B6Ng01-164H05.g_64_847

seq1  GAATTCATGAACCAGGAACTGTGCAGAGAGGACTAAGGGCTGAGTAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAACCAGGAACTGTGCAGAGAGGACTAAGGGCTGAGTAGCCC  50

seq1  CCAAAGAGAGCTGGATCCAGAGGGCCACCTCTTCCGGATTGCTGGATACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGAGCTGGATCCAGAGGGCCACCTCTTCCGGATTGCTGGATACC  100

seq1  TCCCTGACCACATGTCAACCATCAGCACTGATTGACTCTGAAGACCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGACCACATGTCAACCATCAGCACTGATTGACTCTGAAGACCTTGC  150

seq1  TGCTTTCTTAGGAACAGTTGCTGGAGGGAGGAAACAAGTTATCTAAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTTAGGAACAGTTGCTGGAGGGAGGAAACAAGTTATCTAAGGCA  200

seq1  TCCTTTGTCTCAGATCTCCAGGTAGGGACTTCAGGATGCTAAGACCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTCTCAGATCTCCAGGTAGGGACTTCAGGATGCTAAGACCTTCT  250

seq1  ATCACGGGATATGCTGAGTGGTAACTGAGAAGGTCCGTGCTGGGAGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGGGATATGCTGAGTGGTAACTGAGAAGGTCCGTGCTGGGAGGGGT  300

seq1  CTTTCTCATTCACAAGGATTGTCTTCTTGCCTCTTTGCCTGGAAAACACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCATTCACAAGGATTGTCTTCTTGCCTCTTTGCCTGGAAAACACC  350

seq1  CCCCAGTGAGCTTTTACTTCCCGCAGGAGTTAACTATAACCTATGAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGAGCTTTTACTTCCCGCAGGAGTTAACTATAACCTATGAAAGG  400

seq1  CTGCCTTCTGCAGAAAAGAGTGAGAATGTGAGCCAGGTGCTGCTTCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTCTGCAGAAAAGAGTGAGAATGTGAGCCAGGTGCTGCTTCAGGG  450

seq1  GACTATCTGTTACCTCTGCACTAAGGCTGCCAGTATCTGAGTCCTGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATCTGTTACCTCTGCACTAAGGCTGCCAGTATCTGAGTCCTGACAG  500

seq1  CAAGAAAGAATTAGGGCTTGTGGAGACCACAAGGATGGGTGACCACACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGAATTAGGGCTTGTGGAGACCACAAGGATGGGTGACCACACTT  550

seq1  AGACAGCTGGAGCAAATCCTGGGATATGGCCTCTTTTCCCTCCCTGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTGGAGCAAATCCTGGGATATGGCCTCTTTTCCCTCCCTGTCCA  600

seq1  GACCTAACTCCACTTCCAGATGCCCATAAGACATGCTCTCTGTCTGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAACTCCACTTCCAGATGCCCATAAGACATGCTCTCTGTCTGTCTG  650

seq1  CCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG  700
      |||||||||||||||||||||||||||||||||||||||| | | | || 
seq2  CCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACGCTC  700

seq1  CCTCTCTCTTCCCCATGTCCCCTCTCTCTACTTGCAGGCCTCTTGGTTAT  750
       ||||||| | | || || ||||||||||| ||| | | || |||    |
seq2  ACTCTCTCAT-CACAAGTACCCTCTCTCTA-TTGGAAGGCTTTTGACATT  748

seq1  CCCAATTGTCCTCTGTCCCCAGGATTTGTTTCCTCTCC  788
      | |  ||||  | ||||||||||| ||| |||||||||
seq2  CTCTTTTGT-TTTTGTCCCCAGGAATTG-TTCCTCTCC  784