BAC Information

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BAC

Clone NameB6Ng01-164P12
Chromosome11 (Build37)
Map Location 111,386,986 - 111,521,889
singlet/doubletdoublet
Overlap geneLOC100041559, EG629966
Upstream geneLOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539
Downstream geneLOC629967, LOC100041589, LOC100043020, EG668396, EG667038, LOC100041610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164P12.bB6Ng01-164P12.g
ACCDH957153DH957154
length2711,038
definitionDH957153|Mus musculus domesticus DNA, BAC clone: B6Ng01-164P12, 5' end.DH957154|Mus musculus domesticus DNA, BAC clone: B6Ng01-164P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,521,619 - 111,521,889)(111,386,986 - 111,388,041)
sequence
catgaccatttattgtcttcattgaccagttgtgagtatttatgtttgta
tattaataatggaagaggaagtcatgaattatacagggggtgttggtagg
gatatgggagaagttggagggcagagaagaagtataaatgatgccattgt
gtctcgatctctcaaataatgatgtaagcatacaccatgtcctgtgcctg
gtaaattttcagttttaaacaagattgtctagtgagtatataatgtggca
gaacaatgggcagtgagaata
gaattcactggaattttgtgtcatggggtactgcagatgttccaagaata
ggaggaagaagccctcagtcactccatacagcggattgcacacccctctt
ccgcttccatgagtgttccatatctcatttgccacttacattataaaatg
tgagctaaatgagtttttcagtgtttccagacatttgcatttaggaatac
atttaacctggagggatctcttgtgattggacattgaccatgaaaaggta
tttgtctggtaaccggattccaatgtcttctgaccttagctctaatgttt
taatttgatccgccctgctttgattaacaaataaatgccctaatgattct
tagtgcctaaccacttattcggttaatgattgataaaacacaaatctcta
gaagaggatggatgctaacaataattaggtgaacactgcaccttaataaa
tacatggctttattcaccatgattctaataatgggatgtagctaatgaat
tcttaactgatgtacaaagctttagagataattgctgactcagcttttcc
tgctgcctatttgaggattaacccagatcagtgatacaggaaccagtgga
gctatatttctggcaagaatctataacatagtctttccatgactcagcat
aacatcttggctggtcctgtgtttctgcccacttataagtattaggcttc
ctccaaaaacatctagattttcactctagttttgacgttaaaagtgggat
ttccaggcttggatagaattcacttatttagatgaattttatcttaaatg
gtgtcccctcctccatctgttttgtttgaatcaaccacagcatttcagga
agtgggatgggactttccatttcccgatttacctctctctgcgtgctatt
gcagtagtgctattactttagcgtagcagtagactcacaggtgactaaag
cagatgcagctgaatattctgcagtgctctgtgctgcaatgaagtcttgt
atttcaagcaggactgcttaaaactggcctctcaacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_111521619_111521889
seq2: B6Ng01-164P12.b_53_323 (reverse)

seq1  TATTCTCACTGCCCATTGTTCTGCCACATTATATACTCACTAGACAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCACTGCCCATTGTTCTGCCACATTATATACTCACTAGACAATCT  50

seq1  TGTTTAAAACTGAAAATTTACCAGGCACAGGACATGGTGTATGCTTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAACTGAAAATTTACCAGGCACAGGACATGGTGTATGCTTACAT  100

seq1  CATTATTTGAGAGATCGAGACACAATGGCATCATTTATACTTCTTCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTGAGAGATCGAGACACAATGGCATCATTTATACTTCTTCTCTG  150

seq1  CCCTCCAACTTCTCCCATATCCCTACCAACACCCCCTGTATAATTCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAACTTCTCCCATATCCCTACCAACACCCCCTGTATAATTCATGA  200

seq1  CTTCCTCTTCCATTATTAATATACAAACATAAATACTCACAACTGGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTTCCATTATTAATATACAAACATAAATACTCACAACTGGTCAA  250

seq1  TGAAGACAATAAATGGTCATG  271
      |||||||||||||||||||||
seq2  TGAAGACAATAAATGGTCATG  271

seq1: chr11_111386986_111388041
seq2: B6Ng01-164P12.g_69_1106

seq1  GAATTCACTGGAATTTTGTGTCATGGGGTACTGCAGATGTTCCAAGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAATTTTGTGTCATGGGGTACTGCAGATGTTCCAAGAATA  50

seq1  GGAGGAAGAAGCCCTCAGTCACTCCATACAGCGGATTGCACACCCCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGAAGCCCTCAGTCACTCCATACAGCGGATTGCACACCCCTCTT  100

seq1  CCGCTTCCATGAGTGTTCCATATCTCATTTGCCACTTACATTATAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTCCATGAGTGTTCCATATCTCATTTGCCACTTACATTATAAAATG  150

seq1  TGAGCTAAATGAGTTTTTCAGTGTTTCCAGACATTTGCATTTAGGAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAAATGAGTTTTTCAGTGTTTCCAGACATTTGCATTTAGGAATAC  200

seq1  ATTTAACCTGGAGGGATCTCTTGTGATTGGACATTGACCATGAAAAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACCTGGAGGGATCTCTTGTGATTGGACATTGACCATGAAAAGGTA  250

seq1  TTTGTCTGGTAACCGGATTCCAATGTCTTCTGACCTTAGCTCTAATGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGGTAACCGGATTCCAATGTCTTCTGACCTTAGCTCTAATGTTT  300

seq1  TAATTTGATCCGCCCTGCTTTGATTAACAAATAAATGCCCTAATGATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGATCCGCCCTGCTTTGATTAACAAATAAATGCCCTAATGATTCT  350

seq1  TAGTGCCTAACCACTTATTCGGTTAATGATTGATAAAACACAAATCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCTAACCACTTATTCGGTTAATGATTGATAAAACACAAATCTCTA  400

seq1  GAAGAGGATGGATGCTAACAATAATTAGGTGAACACTGCACCTTAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGATGGATGCTAACAATAATTAGGTGAACACTGCACCTTAATAAA  450

seq1  TACATGGCTTTATTCACCATGATTCTAATAATGGGATGTAGCTAATGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGCTTTATTCACCATGATTCTAATAATGGGATGTAGCTAATGAAT  500

seq1  TCTTAACTGATGTACAAAGCTTTAGAGATAATTGCTGACTCAGCTTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTGATGTACAAAGCTTTAGAGATAATTGCTGACTCAGCTTTTCC  550

seq1  TGCTGCCTATTTGAGGATTAACCCAGATCAGTGATACAGGAACCAGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTATTTGAGGATTAACCCAGATCAGTGATACAGGAACCAGTGGA  600

seq1  GCTATATTTCTGGCAAGAATCTATAACATAGTCTTTCCATGACTCAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATTTCTGGCAAGAATCTATAACATAGTCTTTCCATGACTCAGCAT  650

seq1  AACATCTTGGCTGGTCCTGTGTTTCTGCCCACTTATAAGTATTAGGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTTGGCTGGTCCTGTGTTTCTGCCCACTTATAAGTATTAGGCTTC  700

seq1  CTCCAAAAACATCTAGATTTTCACTCTAGTTTTGACGTTAAAAGTGGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAAACATCTAGATTTTCACTCTAGTTTTGACGTTAAAAGTGGGAT  750

seq1  TTCCAGGCTTGGATAGAATTCACTTATTTAGATGAATTTTATCTTAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCTTGGATAGAATTCACTTATTTAGATGAATTTTATCTTAAATG  800

seq1  GTGTCCCCTCCTCCATCTGTTTTGTTTGAATCAACCACAGCATTTCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCCTCCTCCATCTGTTTTGTTTGAATCAACCACAGCATTTCAGGA  850

seq1  AGTGGGATGGGACTTTCCATTTCCCGATTTACCTCTTCCTCTGCGTGCTA  900
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  AGTGGGATGGGACTTTCCATTTCCCGATTTACCTCT--CTCTGCGTGCTA  898

seq1  TCTGCAAGGTAAGTGCCTATTACTTTAGCGGTAGCAAGTAGAACATCACA  950
      | ||||  || |||| ||||||||||||| ||||| ||||||   |||||
seq2  T-TGCA--GT-AGTG-CTATTACTTTAGC-GTAGC-AGTAGA--CTCACA  939

seq1  AGGGTGACTAAAAGCAGATGCAGCTG-ATAATCTGCAAGTGCTCTGTGCT  999
        ||||||| |||||||||||||||| ||| ||||| |||||||||||||
seq2  --GGTGACT-AAAGCAGATGCAGCTGAATATTCTGC-AGTGCTCTGTGCT  985

seq1  GGCATAGAGTCCTCTGTATCTCAAGCAGGACTGCTTTAGACCTGGCCTCT  1049
      |  ||  ||||   ||||| |||||||||||||| ||| | |||||||||
seq2  GCAATGAAGTC--TTGTATTTCAAGCAGGACTGC-TTAAAACTGGCCTCT  1032

seq1  CAGACAG  1056
      || ||||
seq2  CA-ACAG  1038