BAC Information

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BAC

Clone NameB6Ng01-165A04
Chromosome11 (Build37)
Map Location 115,946,836 - 116,113,325
singlet/doubletdoublet
Overlap geneWbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68
Upstream geneCd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d
Downstream geneGalr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165A04.bB6Ng01-165A04.g
ACCDH957184DH957185
length1,0311,090
definitionDH957184|Mus musculus domesticus DNA, BAC clone: B6Ng01-165A04, 5' end.DH957185|Mus musculus domesticus DNA, BAC clone: B6Ng01-165A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,112,270 - 116,113,325)(115,946,836 - 115,947,928)
sequence
gaattccacctgcaagcctccgagtgagagagaccagggtctgcctgctt
cctctgagcgagcgagcactggacaccctgtctgctcagtggccgattcg
ctctcccctgtgtttgctgccactgctgtacttgtgcagtaacacagtag
ttgtcttccctggggctctgtgcttgtgtgcccacttgccaccagacaca
cgcactcacacacactccgcccttgtcccacttggtgtccattcttgggg
gtttggtattagtggatgtcagactgactgacagatgactcgggtccttg
gcatatcgtacagggttcgccatagatgttatctgtttagtcagcctgag
gagaaagaggctcctggagagctctgcctgtgcatctatgtagcttagag
ccccaaacgcagagttgagctcacctgacctggagcggggcctctgaacc
ctcacctccactcagacaccttccctccgtcagcgccggctgtcaggtgt
ggctttccatcctcctaagttgcccgtggttgagagggcagctctggggc
agaagggatgagtcaggagtcaggtagtctttgtattttgtgaatgtggt
cagcctatgcctgcttgtgtgtaataggaaaatcttttaggaacatcttt
cccgtccccatcacctgtttctcaattcagcttattcagttattttaaca
ttctttgcatatttacttctcttatctctcaaaatgtcgctggttttgac
ttggtcacatgtatgcctagtgtagctgtgtcctcccctgctctgcgcac
attccactgagcgtggcctctcagtgcttctcacttctcatctggtgtgg
tctctgtgactagtgggagtggggccacagtgacgcacactgcctgtgtc
agagcccacggctgccaatagaagttgctgctgcttttgaggatatgcat
gtcctctgaaattgggagctttgtactttgggaagggtgaagacaaattc
tgctctgatacctccacacccctagtcagcc
gaattccttgcacttaaaagcctgaggtaggaggactgcctcaaattcaa
ggccaacctgggctacaggaatgaaaccatacctcaaaaaccagagagac
tggtagaagtggggacagtcattagatggcatcagagtacttggctcagc
caaagaactggacaaagtataccagaaaacaatgtaaggtttctcagatt
acaagataaaaaggtttgagttcgtatggttccattcagctgtctcctcc
tgtcccaaatatcctttcttggtgcaataaaagaggggcagctcaggtta
aagaagtggtcaccaggcacatgtgctggccagccccttcccaagaccta
cgcacacgaggtcagcagaacctggccttgtcactgccaccttctcctct
gagtcagcttcccaggtgacaagtcccaagatgggtgcctgtctacactg
ggtgtgggctctgacctccatcatgtctctcttggctctcaagttaatcc
aagcccggatagtgcaagtcaggagagtcagaattccaaggaacaagaaa
caagaggaacagagaagcccagcagttcaaggaggggagagaaaaaaaga
atcttaaagttgggagacctttgttcggggaactgacacaagccattaag
aattcaagagaaccaggcaagagacaagcctttataagggtcaccgggtt
aagtagttgacagacatttagttccaccacctctagggcctcagcctttc
ttttggaacttgagaagttctggaatatacgagaaaactgtacaggagta
gttaagcctattgactttggggccaagttaccttcctttcaattcccctt
ctgttactcacagcacaatggtctaagttattttaacctcattaggcgtc
acttgccctacctgtaaaatgtgtctaatagtttctgcggcacaggatta
tgtattacttaaggtagagctgacgcagcatagtaaagacgtagtgaacc
gctaataaatagcaactatgttttaagacttcgttgggaaagggtcaaga
aatcaccgtgggtcctcactcggcttccaaaaaaccctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116112270_116113325
seq2: B6Ng01-165A04.b_44_1074 (reverse)

seq1  GGCTGACCTAGTGGGGTGTGGAGGATCACAGAGCAGGACCATCTGGTCCT  50
      |||||| |||  |||||||||||| |  ||||||||    || ||   ||
seq2  GGCTGA-CTA--GGGGTGTGGAGG-TATCAGAGCAG---AATTTG--TCT  41

seq1  TCACACCCTTTCCCAAAGTCACAAGCTCCCAGTTTCAGAGGACACTGCTA  100
      |||   || ||||||||||   ||||||||| |||||||||||| |||  
seq2  TCA---CCCTTCCCAAAGTACAAAGCTCCCAATTTCAGAGGACA-TGCAT  87

seq1  GTCCTCAGAAAGCAGCAGCCAACTTCTGATGTGGCAGCCGCTGGGCTCTG  150
       |||||| |||||||||| |||||||| || ||||||||| |||||||||
seq2  ATCCTCA-AAAGCAGCAG-CAACTTCT-AT-TGGCAGCCG-TGGGCTCTG  132

seq1  ACACAGGGCAGTGTGCCGTCACCTGTGGCCCCACTCACACTAGTCACAGA  200
      ||||| ||||||||| ||||| |||||||||||||| |||||||||||||
seq2  ACACA-GGCAGTGTG-CGTCA-CTGTGGCCCCACTCCCACTAGTCACAGA  179

seq1  GACCACACACAGATGAGAAGTGAGAAGGCACTGAGAGGCCACGGCTCAGT  250
      |||||||| ||||||||||||||||| ||||||||||||||| |||||||
seq2  GACCACAC-CAGATGAGAAGTGAGAA-GCACTGAGAGGCCAC-GCTCAGT  226

seq1  GGAATGTGCGCAGAGCAGGGGAGGACACAGCTACACTAGGCATACATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTGCGCAGAGCAGGGGAGGACACAGCTACACTAGGCATACATGTG  276

seq1  ACCAAGTCAAAACCAGCGACATTTTGAGAGATAAGAGAAGTAAATATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTCAAAACCAGCGACATTTTGAGAGATAAGAGAAGTAAATATGCA  326

seq1  AAGAATGTTAAAATAACTGAATAAGCTGAATTTGAGAAACAGGTGATGGG  400
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGAATGTTAAAATAACTGAATAAGCTGAA-TTGAGAAACAGGTGATGGG  375

seq1  GACGGGAAAGATGTTCCTAAAAGATTTTCCTATTACACACAAGCAGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGAAAGATGTTCCTAAAAGATTTTCCTATTACACACAAGCAGGCAT  425

seq1  AGGCTGACCACATTCACAAAATACAAAGACTACCTGACTCCTGACTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGACCACATTCACAAAATACAAAGACTACCTGACTCCTGACTCATC  475

seq1  CCTTCTGCCCCAGAGCTGCCCTCTCAACCACGGGCAACTTAGGAGGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCCCCAGAGCTGCCCTCTCAACCACGGGCAACTTAGGAGGATGG  525

seq1  AAAGCCACACCTGACAGCCGGCGCTGACGGAGGGAAGGTGTCTGAGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCACACCTGACAGCCGGCGCTGACGGAGGGAAGGTGTCTGAGTGGA  575

seq1  GGTGAGGGTTCAGAGGCCCCGCTCCAGGTCAGGTGAGCTCAACTCTGCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGGTTCAGAGGCCCCGCTCCAGGTCAGGTGAGCTCAACTCTGCGT  625

seq1  TTGGGGCTCTAAGCTACATAGATGCACAGGCAGAGCTCTCCAGGAGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCTCTAAGCTACATAGATGCACAGGCAGAGCTCTCCAGGAGCCTC  675

seq1  TTTCTCCTCAGGCTGACTAAACAGATAACATCTATGGCGAACCCTGTACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCAGGCTGACTAAACAGATAACATCTATGGCGAACCCTGTACG  725

seq1  ATATGCCAAGGACCCGAGTCATCTGTCAGTCAGTCTGACATCCACTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCAAGGACCCGAGTCATCTGTCAGTCAGTCTGACATCCACTAATA  775

seq1  CCAAACCCCCAAGAATGGACACCAAGTGGGACAAGGGCGGAGTGTGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCCCCAAGAATGGACACCAAGTGGGACAAGGGCGGAGTGTGTGTG  825

seq1  AGTGCGTGTGTCTGGTGGCAAGTGGGCACACAAGCACAGAGCCCCAGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCGTGTGTCTGGTGGCAAGTGGGCACACAAGCACAGAGCCCCAGGGA  875

seq1  AGACAACTACTGTGTTACTGCACAAGTACAGCAGTGGCAGCAAACACAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTACTGTGTTACTGCACAAGTACAGCAGTGGCAGCAAACACAGG  925

seq1  GGAGAGCGAATCGGCCACTGAGCAGACAGGGTGTCCAGTGCTCGCTCGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCGAATCGGCCACTGAGCAGACAGGGTGTCCAGTGCTCGCTCGCT  975

seq1  CAGAGGAAGCAGGCAGACCCTGGTCTCTCTCACTCGGAGGCTTGCAGGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAAGCAGGCAGACCCTGGTCTCTCTCACTCGGAGGCTTGCAGGTG  1025

seq1  GAATTC  1056
      ||||||
seq2  GAATTC  1031

seq1: chr11_115946836_115947928
seq2: B6Ng01-165A04.g_66_1155

seq1  GAATTCCTTGCACTTAAAAGCCTGAGGTAGGAGGACTGCCTCAAATTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCACTTAAAAGCCTGAGGTAGGAGGACTGCCTCAAATTCAA  50

seq1  GGCCAACCTGGGCTACAGGAATGAAACCATACCTCAAAAACCAGAGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACCTGGGCTACAGGAATGAAACCATACCTCAAAAACCAGAGAGAC  100

seq1  TGGTAGAAGTGGGGACAGTCATTAGATGGCATCAGAGTACTTGGCTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAAGTGGGGACAGTCATTAGATGGCATCAGAGTACTTGGCTCAGC  150

seq1  CAAAGAACTGGACAAAGTATACCAGAAAACAATGTAAGGTTTCTCAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACTGGACAAAGTATACCAGAAAACAATGTAAGGTTTCTCAGATT  200

seq1  ACAAGATAAAAAGGTTTGAGTTCGTATGGTTCCATTCAGCTGTCTCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATAAAAAGGTTTGAGTTCGTATGGTTCCATTCAGCTGTCTCCTCC  250

seq1  TGTCCCAAATATCCTTTCTTGGTGCAATAAAAGAGGGGCAGCTCAGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAAATATCCTTTCTTGGTGCAATAAAAGAGGGGCAGCTCAGGTTA  300

seq1  AAGAAGTGGTCACCAGGCACATGTGCTGGCCAGCCCCTTCCCAAGACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGGTCACCAGGCACATGTGCTGGCCAGCCCCTTCCCAAGACCTA  350

seq1  CGCACACGAGGTCAGCAGAACCTGGCCTTGTCACTGCCACCTTCTCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACGAGGTCAGCAGAACCTGGCCTTGTCACTGCCACCTTCTCCTCT  400

seq1  GAGTCAGCTTCCCAGGTGACAAGTCCCAAGATGGGTGCCTGTCTACACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGCTTCCCAGGTGACAAGTCCCAAGATGGGTGCCTGTCTACACTG  450

seq1  GGTGTGGGCTCTGACCTCCATCATGTCTCTCTTGGCTCTCAAGTTAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGCTCTGACCTCCATCATGTCTCTCTTGGCTCTCAAGTTAATCC  500

seq1  AAGCCCGGATAGTGCAAGTCAGGAGAGTCAGAATTCCAAGGAACAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCGGATAGTGCAAGTCAGGAGAGTCAGAATTCCAAGGAACAAGAAA  550

seq1  CAAGAGGAACAGAGAAGCCCAGCAGTTCAAGGAGGGGAGAGAAAAAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGAACAGAGAAGCCCAGCAGTTCAAGGAGGGGAGAGAAAAAAAGA  600

seq1  ATCTTAAAGTTGGGAGACCTTTGTTCGGGGAACTGACACAAGCCATTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAGTTGGGAGACCTTTGTTCGGGGAACTGACACAAGCCATTAAG  650

seq1  AATTCAAGAGAACCAGGCAAGAGACAAGCCTTTATAAGGGTCACCGGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGAGAACCAGGCAAGAGACAAGCCTTTATAAGGGTCACCGGGTT  700

seq1  AAGTAGTTGACAGACATTTAGTTCCACCACCTCTAGGGCCTCAGCCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTTGACAGACATTTAGTTCCACCACCTCTAGGGCCTCAGCCTTTC  750

seq1  TTTTGGAACTTGAGAAGTTCTGGAATATACGAGAAAACTGTACAGGAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAACTTGAGAAGTTCTGGAATATACGAGAAAACTGTACAGGAGTA  800

seq1  GTTAAGCCTATTGACTTTGGGGCCAAGTTACCTTCC-TTCAATTCCCCTT  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTTAAGCCTATTGACTTTGGGGCCAAGTTACCTTCCTTTCAATTCCCCTT  850

seq1  CTGTTACTCACAGCACAATGGTCTAAGTTATTTTAACCTCATTAGGCGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACTCACAGCACAATGGTCTAAGTTATTTTAACCTCATTAGGCGTC  900

seq1  ACTTGCCCTACCTGTAAAATGTGTCTAATAGTTTCTGCGGCACAGGATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCCTACCTGTAAAATGTGTCTAATAGTTTCTGCGGCACAGGATTA  950

seq1  TGTATTACCTAAGGTAGAGCTGACGCAGCATAGTAAAGACGTAGTGAACG  999
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  TGTATTACTTAAGGTAGAGCTGACGCAGCATAGTAAAGACGTAGTGAACC  1000

seq1  CCTAATAAATAGCAACTATGTTTTAAGACTTCGTTTGGGAAGGGGTTCAA  1049
       |||||||||||||||||||||||||||||||||| || |||||  ||||
seq2  GCTAATAAATAGCAACTATGTTTTAAGACTTCGTTGGGAAAGGG--TCAA  1048

seq1  GAAATCACCCGTGGG-CCTCACTCGGCTTCCCAAACAAACCCTGA  1093
      ||||||| ||||||| |||||||||||||||  || |||||||||
seq2  GAAATCA-CCGTGGGTCCTCACTCGGCTTCC--AAAAAACCCTGA  1090