BAC Information

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BAC

Clone NameB6Ng01-165H12
Chromosome11 (Build37)
Map Location 4,197,472 - 4,398,504
singlet/doubletdoublet
Overlap geneHormad2, Mtmr3
Upstream genePatz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif
Downstream geneLOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165H12.bB6Ng01-165H12.g
ACCDH957519DH957520
length4401,041
definitionDH957519|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H12, 5' end.DH957520|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,197,472 - 4,197,917)(4,397,460 - 4,398,504)
sequence
tatgttaggaaaatatataggataaaggtggggcagctcctctctaccag
ctggatatgaagcacctcctggagatcaggccatcccgagcctgagcgga
gctcacagtccaacagaagagctcagaggtgacctgaggaaggccatggc
tagtcaggagcaattgatctctggctccatgacacagtgattctgaagct
gaaaatggactcccatggaaggaagacaaatgacaattctgaatgccagt
gactgtccttttggagctcggacagcataagaaatctgatggcggagatg
gtgcttggtctggaattggctctctctagtcttttggcagagagggaggg
taagactccagtgaccaccatggcctgctcctctcactactgggtcacta
tggaaataacttggcagtatctgggggggggggagtagga
gaattcagtgagtttgtttgaggagggacaggtcttgacaaagcactgga
aaatcttttgtttcaaggcaaatgttgtcttccttgccattgtgacaaga
atgaagtaattggatgaggatgtgggttgtctccagtctgtggagaaaaa
tacctgcttttatgaaaggactacaggggtagaaatgagggtaagacatt
aggtgaagtgggagtttcatctaatgtgctttgggaattggttttggaaa
ataaatccttatcaatttcaagaggcagagggtacactgaaggcaagaac
caggtctggctaggcggctccattgattggagttcattttgttctgtttt
tactgtaatatgtgcctctggtactagatagtcacagttctaggagagct
gggtctgcttagtttttatccccttcttgatgcctgcagattcctctctg
tcaaatacttcaggagcagaaagtttagctctccagccccagaagctttt
gatcttggatgcacgctcctatgcagcagctgtggcaaatcgagccaaag
gaggaggctgtgagtgcccaggtgggtgtatagtctgtccccgcatcatc
tgtccttgtcagtgcccctcactcacagcctaggcttcagttaaagtaaa
tggcaaagcgcgttctttgccctgcatccagaaagccaggccgtctctct
ggatccttgacctctgtgagctttgggctgaggtgcagaccatcttcctc
ctgtgtaccaacctcaaggataggaaagctggtctctgcccacaggtctg
tagaggctctgtttctcaatctgttgtctctcacagtacataagtgaatc
actagctttctgccctcccacggacttcttagaaaagcgggtcagttgga
ggtagtaaatacagagctctagtgttccgcctttcgactctgccacggcc
ctgctgtttgagtgctgctactttgctgctttacatttgctggtgagatc
cttaacttgaaagtattgtgggtttttttaaatggtttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_4197472_4197917
seq2: B6Ng01-165H12.b_43_488

seq1  GAATTCTATGTTAGGAAAATATATAGGATAAAGGTGGGGCAGCTCCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTTAGGAAAATATATAGGATAAAGGTGGGGCAGCTCCTCTC  50

seq1  TACCAGCTGGATATGAAGCACCTCCTGGAGATCAGGCCATCCCGAGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCTGGATATGAAGCACCTCCTGGAGATCAGGCCATCCCGAGCCTG  100

seq1  AGCGGAGCTCACAGTCCAACAGAAGAGCTCAGAGGTGACCTGAGGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGAGCTCACAGTCCAACAGAAGAGCTCAGAGGTGACCTGAGGAAGGC  150

seq1  CATGGCTAGTCAGGAGCAATTGATCTCTGGCTCCATGACACAGTGATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTAGTCAGGAGCAATTGATCTCTGGCTCCATGACACAGTGATTCT  200

seq1  GAAGCTGAAAATGGACTCCCATGGAAGGAAGACAAATGACAATTCTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGAAAATGGACTCCCATGGAAGGAAGACAAATGACAATTCTGAAT  250

seq1  GCCAGTGACTGTCCTTTTGGAGCTCGGACAGCATAAGAAATCTGATGGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGACTGTCCTTTTGGAGCTCGGACAGCATAAGAAATCTGATGGCG  300

seq1  GAGATGGTGCTTGGTCTGGAATTGGCTCTCTCTAGTCTTTTGGCAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGTGCTTGGTCTGGAATTGGCTCTCTCTAGTCTTTTGGCAGAGAG  350

seq1  GGAGGGTAAGACTCCAGTGACCACCATGGCCTGCTCCTCTCACTACTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTAAGACTCCAGTGACCACCATGGCCTGCTCCTCTCACTACTGGG  400

seq1  TCACTATGGAAATAACTTGGCAGTATCTGGGGGGGGGGGAGTAGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGGAAATAACTTGGCAGTATCTGGGGGGGGGGGAGTAGGA  446

seq1: chr11_4397460_4398504
seq2: B6Ng01-165H12.g_70_1110 (reverse)

seq1  GAAAAACAATTTAAAAAAACCCACAATACATTCAAGTTAAGGATCTCACC  50
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  GAAAAACCATTTAAAAAAACCCACAATACTTTCAAGTTAAGGATCTCACC  50

seq1  AGCAAATGTAAAAGCAGCAAAGTAGCAGCACTCAAACAGCAGGGCCGTGG  100
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGT-AAAGCAGCAAAGTAGCAGCACTCAAACAGCAGGGCCGTGG  99

seq1  CAGAGTCAGAAAGGGCGGAACACTAGAGCTCTGTATTTACTACCTCCAAC  150
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  CAGAGTC-GAAA-GGCGGAACACTAGAGCTCTGTATTTACTACCTCCAAC  147

seq1  TGACCCCGCTTTTCTAAGAAGTCCGTGGGAGTGGCAGGAAGCTAGTGATT  200
      ||| ||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  TGA-CCCGCTTTTCTAAGAAGTCCGTGGGAG-GGCAGAAAGCTAGTGATT  195

seq1  CACTTATGTACTGTGAGAGACAACAGATTGAGAAACAGAGCCTCTACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATGTACTGTGAGAGACAACAGATTGAGAAACAGAGCCTCTACAGA  245

seq1  CCTGTGGGCAGAGACCAGCTTTCCTATCCTTGAGGTTGGTACACAGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGCAGAGACCAGCTTTCCTATCCTTGAGGTTGGTACACAGGAGG  295

seq1  AAGATGGTCTGCACCTCAG-CCAAAGCTCACAGAGGTCAAGGATCCAGAG  349
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGATGGTCTGCACCTCAGCCCAAAGCTCACAGAGGTCAAGGATCCAGAG  345

seq1  AGACGGCCTGGCTTTCTGGATGCAGGGCAAAGAACGCGCTTTGCCATTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGCCTGGCTTTCTGGATGCAGGGCAAAGAACGCGCTTTGCCATTTA  395

seq1  CTTTAACTGAAGCCTAGGCTGTGAGTGAGGGGCACTGACAAGGACAGATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTGAAGCCTAGGCTGTGAGTGAGGGGCACTGACAAGGACAGATG  445

seq1  ATGCGGGGACAGACTATACACCCACCTGGGCACTCACAGCCTCCTCCTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGGGACAGACTATACACCCACCTGGGCACTCACAGCCTCCTCCTTT  495

seq1  GGCTCGATTTGCCACAGCTGCTGCATAGGAGCGTGCATCCAAGATCAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGATTTGCCACAGCTGCTGCATAGGAGCGTGCATCCAAGATCAAAA  545

seq1  GCTTCTGGGGCTGGAGAGCTAAACTTTCTGCTCCTGAAGTATTTGACAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGGGCTGGAGAGCTAAACTTTCTGCTCCTGAAGTATTTGACAGA  595

seq1  GAGGAATCTGCAGGCATCAAGAAGGGGATAAAAACTAAGCAGACCCAGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATCTGCAGGCATCAAGAAGGGGATAAAAACTAAGCAGACCCAGCT  645

seq1  CTCCTAGAACTGTGACTATCTAGTACCAGAGGCACATATTACAGTAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGAACTGTGACTATCTAGTACCAGAGGCACATATTACAGTAAAAA  695

seq1  CAGAACAAAATGAACTCCAATCAATGGAGCCGCCTAGCCAGACCTGGTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAAAATGAACTCCAATCAATGGAGCCGCCTAGCCAGACCTGGTTC  745

seq1  TTGCCTTCAGTGTACCCTCTGCCTCTTGAAATTGATAAGGATTTATTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTCAGTGTACCCTCTGCCTCTTGAAATTGATAAGGATTTATTTTC  795

seq1  CAAAACCAATTCCCAAAGCACATTAGATGAAACTCCCACTTCACCTAATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCAATTCCCAAAGCACATTAGATGAAACTCCCACTTCACCTAATG  845

seq1  TCTTACCCTCATTTCTACCCCTGTAGTCCTTTCATAAAAGCAGGTATTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCCTCATTTCTACCCCTGTAGTCCTTTCATAAAAGCAGGTATTTT  895

seq1  TCTCCACAGACTGGAGACAACCCACATCCTCATCCAATTACTTCATTCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACAGACTGGAGACAACCCACATCCTCATCCAATTACTTCATTCTT  945

seq1  GTCACAATGGCAAGGAAGACAACATTTGCCTTGAAACAAAAGATTTTCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAATGGCAAGGAAGACAACATTTGCCTTGAAACAAAAGATTTTCCA  995

seq1  GTGCTTTGTCAAGACCTGTCCCTCCTCAAACAAACTCACTGAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGTCAAGACCTGTCCCTCCTCAAACAAACTCACTGAATTC  1041