BAC Information

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BAC

Clone NameB6Ng01-165P22
Chromosome11 (Build37)
Map Location 111,927,702 - 112,089,749
singlet/doubletdoublet
Overlap geneLOC100041589, LOC100043020
Upstream geneKcnj2, LOC667003, LOC100041539, LOC100041559, EG629966, LOC629967
Downstream geneEG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9, 2610035D17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165P22.bB6Ng01-165P22.g
ACCDH957899DH957900
length1,057843
definitionDH957899|Mus musculus domesticus DNA, BAC clone: B6Ng01-165P22, 5' end.DH957900|Mus musculus domesticus DNA, BAC clone: B6Ng01-165P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,927,702 - 111,928,754)(112,089,214 - 112,089,749)
sequence
gaattcattactattttggatacaagtcctttgtcaggtcatgttgtggt
aggcagctactaacacagtccccaaaaatcccactttctggtattccttg
tcccttcacggtcagtcccttcctttgcgtctgtggagccactgattggc
ttttaatcaagagagggcagcgtgatatgtcattatggccaactgggttt
gagtgacaaggtcagaacttccctgtgtctcccgtactttgtaaggcaag
ctgctgttggggagactcacaagcaagatccctagaggatgactgaagcc
tgaaaacaacagttaagaagctcaagtctgtaaaataccacgtgacagct
aagctaaaataccacgtgacagctaagctaaaataccacgtgacagctaa
gctaaaataccacgtgacagctaagctttgagatgatcattgagctttta
tgggactcgtggctggttcacagtaagaggtcccactgcacaaggaagcc
caaactcctgcaatacaggatagcaagatgaatatttttgtcatctttaa
tacaaacagtacacaggaacaatacgcatgcaatacaaatatttctctac
attacagatggcctttctgatgagcagtaccacctcaaagtggctttaat
ttgcatttcctcaatgatgctttgacataggttgggatgttgaatacttt
cagtgtgaagtgtttgtttaaacattcacgcatattttaaaaaaataaaa
gagtgtatcttttattgaatcgtaaggcacttcaaataaattctagttat
tgtttactttttgaatcaccataaacaaatcgcttatcctaaaaaaatgg
gtcacgttttcacctttctgaggttatctttttaaaaattatgtctatta
aatctgtgtgtagcacggttgggtgggcagtagggatgggtatgtacata
tgcatgcaggtacccctgaaggccagatgaggccgccaaatcctaatgta
gctggaggtacaagctgctatggagtctcctaatcttggattgctgggaa
ccaaatt
gaattccacaggaagaccaacagagtcaactaacctggaaacctggaccc
ttgggggctctcagagactgggccaccaaccaaagagtgtacatgggctg
gactgaagcccctggcatatatgtagcagatgtgtagttcagtcatcatg
tgggtcccccaacaactgcagtgagggctgtccataaagctgttgcctgt
ctgtggaatcagtttccctaagtaggatgccttgtctggcctcagtggga
gagggtgcacctaattctatggagactctatgtgccagtgttgaaggggg
gaatgcccaggaggccccatcctctcagaagagaagcagggaggagatat
gtgaaggagggcctgggaaggggtgcagcaatcaggatgtaaaatgaaca
agaaaaaaaattaatggaaattatatatatatatatatatatatatatat
atatatatatatatacccatacatacatacacacacacacacacacacac
acacacacacacacacacatatatatatatatatatatatatatatatat
atgtataaaatgttccattgttttatttatctttttaaagtctatctgtc
tctttggtggagacttcacctgcatgtgtgtcttttgggttcttttaata
ctgttttgtactaagcacaagagtgtgtacacattctttcacactgattt
tctttcccgttggattgatatgctatagtagaattctggcccttatggag
ttatagttttcatatttctgcgaaacctccaagctgttttggataatgtc
taccatgctgtttgctcgttttttaagtggttttttttttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_111927702_111928754
seq2: B6Ng01-165P22.b_47_1103

seq1  GAATTCATTACTATTTTGGATACAAGTCCTTTGTCAGGTCATGTTGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACTATTTTGGATACAAGTCCTTTGTCAGGTCATGTTGTGGT  50

seq1  AGGCAGCTACTAACACAGTCCCCAAAAATCCCACTTTCTGGTATTCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTACTAACACAGTCCCCAAAAATCCCACTTTCTGGTATTCCTTG  100

seq1  TCCCTTCACGGTCAGTCCCTTCCTTTGCGTCTGTGGAGCCACTGATTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCACGGTCAGTCCCTTCCTTTGCGTCTGTGGAGCCACTGATTGGC  150

seq1  TTTTAATCAAGAGAGGGCAGCGTGATATGTCATTATGGCCAACTGGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCAAGAGAGGGCAGCGTGATATGTCATTATGGCCAACTGGGTTT  200

seq1  GAGTGACAAGGTCAGAACTTCCCTGTGTCTCCCGTACTTTGTAAGGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACAAGGTCAGAACTTCCCTGTGTCTCCCGTACTTTGTAAGGCAAG  250

seq1  CTGCTGTTGGGGAGACTCACAAGCAAGATCCCTAGAGGATGACTGAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTTGGGGAGACTCACAAGCAAGATCCCTAGAGGATGACTGAAGCC  300

seq1  TGAAAACAACAGTTAAGAAGCTCAAGTCTGTAAAATACCACGTGACAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAACAGTTAAGAAGCTCAAGTCTGTAAAATACCACGTGACAGCT  350

seq1  AAGCTAAAATACCACGTGACAGCTAAGCTAAAATACCACGTGACAGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAAATACCACGTGACAGCTAAGCTAAAATACCACGTGACAGCTAA  400

seq1  GCTAAAATACCACGTGACAGCTAAGCTTTGAGATGATCATTGAGCTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAATACCACGTGACAGCTAAGCTTTGAGATGATCATTGAGCTTTTA  450

seq1  TGGGACTCGTGGCTGGTTCACAGTAAGAGGTCCCACTGCACAAGGAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCGTGGCTGGTTCACAGTAAGAGGTCCCACTGCACAAGGAAGCC  500

seq1  CAAACTCCTGCAATACAGGATAGCAAGATGAATATTTTTGTCATCTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCCTGCAATACAGGATAGCAAGATGAATATTTTTGTCATCTTTAA  550

seq1  TACAAACAGTACACAGGAACAATACGCATGCAATACAAATATTTCTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACAGTACACAGGAACAATACGCATGCAATACAAATATTTCTCTAC  600

seq1  ATTACAGATGGCCTTTCTGATGAGCAGTACCACCTCAAAGTGGCTTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGATGGCCTTTCTGATGAGCAGTACCACCTCAAAGTGGCTTTAAT  650

seq1  TTGCATTTCCTCAATGATGCTTTGACATAGGTTGGGATGTTGAATACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTCCTCAATGATGCTTTGACATAGGTTGGGATGTTGAATACTTT  700

seq1  CAGTGTGAAGTGTTTGTTTAAACATTCACGCATATTTTAAAAAAATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGAAGTGTTTGTTTAAACATTCACGCATATTTTAAAAAAATAAAA  750

seq1  GAGTGTATCTTTTATTGAATCGTAAGGCACTTCAAATAAATTCTAGTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTATCTTTTATTGAATCGTAAGGCACTTCAAATAAATTCTAGTTAT  800

seq1  TGTTTACTTTTTGAATCACCATAAACAAATCGCTTATCCTAAAAAAATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTTTTTGAATCACCATAAACAAATCGCTTATCCTAAAAAAATGG  850

seq1  GTCACGTTTTCACCTTTCTGAGGTTATCTTTTTAAAAATTATGTCTATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGTTTTCACCTTTCTGAGGTTATCTTTTTAAAAATTATGTCTATTA  900

seq1  AATCTGTGTGTAGCAGGGTTGGGTGGGCAGTAGGGATGGGTATGTACATA  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATCTGTGTGTAGCACGGTTGGGTGGGCAGTAGGGATGGGTATGTACATA  950

seq1  TGCATGCAGGTACCCCTG-AGGCCAGAAGAGGGCGCCAAATCCT-ATGTA  998
      |||||||||||||||||| |||||||| |||| ||||||||||| |||||
seq2  TGCATGCAGGTACCCCTGAAGGCCAGATGAGGCCGCCAAATCCTAATGTA  1000

seq1  GCTGGAGGTACAAGCTGCTAT-GAGTCTCCTAACTTTGGA-TGCTGGGAA  1046
      ||||||||||||||||||||| |||||||||||  ||||| |||||||||
seq2  GCTGGAGGTACAAGCTGCTATGGAGTCTCCTAATCTTGGATTGCTGGGAA  1050

seq1  CCAAATT  1053
      |||||||
seq2  CCAAATT  1057

seq1: chr11_112089214_112089749
seq2: B6Ng01-165P22.g_372_910 (reverse)

seq1  CAAAAAAAAAAAACCACTT-AAAAACGAGCAAACAGCATGGTAGACATTA  49
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAACCACTTAAAAAACGAGCAAACAGCATGGTAGACATTA  50

seq1  TCCAAAACAGCTTGGAGGTTTCGCAGAAATATGAAAACTATAACTCCATA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACAGCTTGGAGGTTTCGCAGAAATATGAAAACTATAACTCCATA  100

seq1  AGGGCCAGAATTCTACTATAGCATATCAATCCAACGGGAAAGAAAATCAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGAATTCTACTATAGCATATCAATCCAACGGGAAAGAAAATCAG  150

seq1  TGTGAAAGAATGTGTACACACTCTTGTGCTTAGTACAAAACAGTATTAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGAATGTGTACACACTCTTGTGCTTAGTACAAAACAGTATTAAA  200

seq1  AGAACC--AAAGACACACATGCAGGTGAAGTCTCCACC-AAGAGACAGAT  246
      ||||||  |||||||||||||||||||||||||||||| |||||||||||
seq2  AGAACCCAAAAGACACACATGCAGGTGAAGTCTCCACCAAAGAGACAGAT  250

seq1  AGACTTTAAAAAGATAAAT-AAACAATGGAACATTTTATACATATATATA  295
      ||||||||||||||||||| |||||||||||||||||||||  |||||||
seq2  AGACTTTAAAAAGATAAATAAAACAATGGAACATTTTATAC--ATATATA  298

seq1  TATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTG  348

seq1  TGTGTGTGTGTGTGTGTATGTATGTATGGGTATATATATATATATATATA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTATGTATGTATGGGTATATATATATATATATATA  398

seq1  TATATATATATATATATATATATAATTTCCATTAATTTTTTTTCTTGTTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATAATTTCCATTAATTTTTTTTCTTGTTC  448

seq1  ATTTTACATCCTGATTGCTGCACCCCTTCCCAGGCCCTCCTTCACATATC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACATCCTGATTGCTGCACCCCTTCCCAGGCCCTCCTTCACATATC  498

seq1  TCCTCCCTGCTTCTCTTCTGAGAGGATGGGGCCTCCTGGGC  536
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTGCTTCTCTTCTGAGAGGATGGGGCCTCCTGGGC  539