BAC Information

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BAC

Clone NameB6Ng01-166E22
Chromosome11 (Build37)
Map Location 3,792,809 - 3,949,138
singlet/doubletdoublet
Overlap gene4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920
Downstream geneSec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166E22.bB6Ng01-166E22.g
ACCDH958123DH958124
length1,099225
definitionDH958123|Mus musculus domesticus DNA, BAC clone: B6Ng01-166E22, 5' end.DH958124|Mus musculus domesticus DNA, BAC clone: B6Ng01-166E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,792,809 - 3,793,917)(3,948,914 - 3,949,138)
sequence
gaattcaggacctccggaagagcagtcagtgctcttacctgctgagccat
ctctccagctcctgggttctcattttttgataatttagttatattatgaa
gtgtttttcaatggtttttcccatttaaaaaaacaattgttcatacattc
taaaacttggaagccaagtggatcattgtgttaagtcagttgatataata
catataatcaagaataaatatcttggtataataactagatagagaaaaaa
gttgtggccactgcaactaaacagtggctactgtttactaaagagtgaat
ttttgtgttgtgctttttaaaaatacaacacacatatacttagatatgga
ttatcttagcctgtcaattgctgtaataaaatactgaccaaaaacaactt
gaagagagtgcttacttcagtttacaggttgcagttgctcatcaaataag
gctgaggcagagctaagggcaggaacctgaagtcaggaactaaagcagag
accacagtggaaggctgcttactggcttgctcttcatgacttactcaact
ggccttcttatacaacccaaccacccgcgcaggtgtgacactgtccacag
tgccctacatcctcccacaccagtcattaggaaactgctccccagacacg
cccacaggccatcagctgtagacaattccccaaaagatgttccttcatcc
caggtaaaactagtagttttaaattgacaaaaactagccagcacagtgat
tggtttgctgctccgacttctgtttggtttgttgttgttgatgttgctta
gtttattttacttttgaaatgattggcaaaccactctaaaggaaaccagg
gaaatgacatacgtgctggtgaagtatttctgaatacagattcccaaaca
aacaatagcaaaaagggaagaaccacacatgaattgactgaaacagaaat
ggctgtctgatacacacaggaacagaaggaatacaaatacacttatacta
aactcagtctctattggttagcacatcagatagatcatcataaaatacat
tcatagtccgacaacaaaacaaacaaaacaaaaaacggaaaacaccacc
tccttcgcctcggacgtgtcactccctgattggctgcagcccatcggccg
agttgacgtcacggggaaggcagagcacaagtagtcataagatacccttg
gcacatgcgcagattatttgtttaccacttagaacacagctgtcagcgcc
atcttgtaacggcgaatgtgggcgcggctcccaacaggagagagggaaag
gaaaaacaggagaaggagaaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3792809_3793917
seq2: B6Ng01-166E22.b_46_1144

seq1  GAATTCAGGACCTCCGGAAGAGCAGTCAGTGCTCTTACCTGCTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTCCGGAAGAGCAGTCAGTGCTCTTACCTGCTGAGCCAT  50

seq1  CTCTCCAGCTCCTGGGTTCTCATTTTTTGATAATTTAGTTATATTATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCTCCTGGGTTCTCATTTTTTGATAATTTAGTTATATTATGAA  100

seq1  GTGTTTTTCAATGGTTTTTCCCATTTAAAAAAACAATTGTTCATACATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTCAATGGTTTTTCCCATTTAAAAAAACAATTGTTCATACATTC  150

seq1  TAAAACTTGGAAGCCAAGTGGATCATTGTGTTAAGTCAGTTGATATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTGGAAGCCAAGTGGATCATTGTGTTAAGTCAGTTGATATAATA  200

seq1  CATATAATCAAGAATAAATATCTTGGTATAATAACTAGATAGAGAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATCAAGAATAAATATCTTGGTATAATAACTAGATAGAGAAAAAA  250

seq1  GTTGTGGCCACTGCAACTAAACAGTGGCTACTGTTTACTAAAGAGTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGCCACTGCAACTAAACAGTGGCTACTGTTTACTAAAGAGTGAAT  300

seq1  TTTTGTGTTGTGCTTTTTAAAAATACAACACACATATACTTAGATATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTTGTGCTTTTTAAAAATACAACACACATATACTTAGATATGGA  350

seq1  TTATCTTAGCCTGTCAATTGCTGTAATAAAATACTGACCAAAAACAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTAGCCTGTCAATTGCTGTAATAAAATACTGACCAAAAACAACTT  400

seq1  GAAGAGAGTGCTTACTTCAGTTTACAGGTTGCAGTTGCTCATCAAATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGTGCTTACTTCAGTTTACAGGTTGCAGTTGCTCATCAAATAAG  450

seq1  GCTGAGGCAGAGCTAAGGGCAGGAACCTGAAGTCAGGAACTAAAGCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGCAGAGCTAAGGGCAGGAACCTGAAGTCAGGAACTAAAGCAGAG  500

seq1  ACCACAGTGGAAGGCTGCTTACTGGCTTGCTCTTCATGACTTACTCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGTGGAAGGCTGCTTACTGGCTTGCTCTTCATGACTTACTCAACT  550

seq1  GGCCTTCTTATACAACCCAACCACCCGCGCAGGTGTGACACTGTCCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCTTATACAACCCAACCACCCGCGCAGGTGTGACACTGTCCACAG  600

seq1  TGCCCTACATCCTCCCACACCAGTCATTAGGAAACTGCTCCCCAGACACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTACATCCTCCCACACCAGTCATTAGGAAACTGCTCCCCAGACACG  650

seq1  CCCACAGGCCATCAGCTGTAGACAATTCCCCAAAAGATGTTCCTTCATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGCCATCAGCTGTAGACAATTCCCCAAAAGATGTTCCTTCATCC  700

seq1  CAGGTAAAACTAGTAGTTTTAAATTGACAAAAACTAGCCAGCACAGTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAACTAGTAGTTTTAAATTGACAAAAACTAGCCAGCACAGTGAT  750

seq1  TGGTTTGCTGCTCCGACTTCTGTTTGGTTTGTTGTTGTTGATGTTGCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGCTGCTCCGACTTCTGTTTGGTTTGTTGTTGTTGATGTTGCTTA  800

seq1  GTTTATTTTACTTTTGAAATGATTGGCAAACCACTCTAAAGGAAACCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTTACTTTTGAAATGATTGGCAAACCACTCTAAAGGAAACCAGG  850

seq1  GAAATGACATACGTGCTGGTGAAGTATTTCTGAATACAGATTCCCAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACATACGTGCTGGTGAAGTATTTCTGAATACAGATTCCCAAACA  900

seq1  AACAATAGCAAAAAGGGAAGAACCACACATGAATTGACTGAAACAGAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGCAAAAAGGGAAGAACCACACATGAATTGACTGAAACAGAAAT  950

seq1  GGCTGTCTGATACACACAGGAACAGAAGGAATACAAATAACAACTTATAC  1000
      |||||||||||||||||||||||||||||||||||||||   ||||||||
seq2  GGCTGTCTGATACACACAGGAACAGAAGGAATACAAATA--CACTTATAC  998

seq1  TAAACTCAGTCTCTATTGGTTAGCACATCAGAATAAGATCATCATAAAAT  1050
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  TAAACTCAGTCTCTATTGGTTAGCACATCAGA--TAGATCATCATAAAAT  1046

seq1  ACATTCATAGTCAGACAA-AACAAAAACAAAACAAAAACAAAAAAACAGA  1099
      |||||||||||| ||||| || | |||||||||       ||||||| ||
seq2  ACATTCATAGTCCGACAACAAAACAAACAAAAC-------AAAAAACGGA  1089

seq1  AAACACCACC  1109
      ||||||||||
seq2  AAACACCACC  1099

seq1: chr11_3948914_3949138
seq2: B6Ng01-166E22.g_72_296 (reverse)

seq1  CCTCCTTCTCCTTCTCCTGTTTTTCCTTTCCCTCTCTCCTGTTGGGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCTCCTTCTCCTGTTTTTCCTTTCCCTCTCTCCTGTTGGGAGCC  50

seq1  GCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTG  100

seq1  GTAAACAAATAATCTGCGCATGTGCCAAGGGTATCTTATGACTACTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAATAATCTGCGCATGTGCCAAGGGTATCTTATGACTACTTGTG  150

seq1  CTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAG  200

seq1  GGAGTGACACGTCCGAGGCGAAGGA  225
      |||||||||||||||||||||||||
seq2  GGAGTGACACGTCCGAGGCGAAGGA  225