BAC Information

Click to search

BAC

Clone NameB6Ng01-166N21
Chromosome11 (Build37)
Map Location 69,717,606 - 69,879,603
singlet/doubletdoublet
Overlap gene0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1
Upstream geneRpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik
Downstream geneAsgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166N21.bB6Ng01-166N21.g
ACCDH958518DH958519
length847608
definitionDH958518|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N21, 5' end.DH958519|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,717,606 - 69,718,452)(69,878,996 - 69,879,603)
sequence
gaattcaacaatggagttgtcatgaccaaccgcccacttcgggataatga
aatgtttgaggtatgtaaaatcctggagtctgactgtgcttcctgccaaa
gatttggagctaaacgtagggattgatctttggcggcaatatgccaacaa
ctggtgaagaaccaaggctttgagggcctgtcttctgttgttatatttcc
tggacctgtctactctcactcaaccccagatccggatcgacaagcttgta
gacaagtggtctggttccatcgagattggtgtcaccacccacaaccccaa
tagcctggagtacccagccaccatgaccaacctgcagtcaggtaccagct
ctgggtaggggtagggacacaggcttggagttggtgagatccagacagcc
tttccctaaccaggtgtccatctttaccaggcaccatcatgatgagtggc
tgtgggatcctgaccaacggcaaaggcactcggcgggagtactgcgagtt
cagtctggacgagctgcaggtgagtgtggagcacagcagcctgggcagtc
caggggagcccggccacctgggccaccaggcagtgtccctttctgcatga
ggcttcttctgaggaggcaaggccgtctggcaggagctaaggtatgctca
ttagtagcaccttttttccctttggtgctaggaatggaacctaggacctt
ggacacgtgtggcaagtgctctagcactgagttacagctctagcccaata
gcactaagtaggccgagattttagagcaacaacaacaaaaaagattgttg
ttgttgttgttgttgttttaatttatttatttattatatgtaagtac
gaattcagtgatctcgtgcagcctttcacccggacgcagcttggcagact
cagtcttgaacacgcagtcaactctgtaactgcctggtagacgacagccc
catgagatgcggcggctaacctgtggacgctttccatgctctgttgcctg
cagagccagaattttcaggtctggaaatcaaaggcttctcccctattaaa
ctctataaactcacttgggtttggattctgttctagcaaagttagaagcc
ataaatccaatggtcgaaatgcttatcccgggaaacctaactggtccaac
tcagaggcaaactcactcaaatggctgtgtccgggcaaagaaacctcaag
ggaaattttgactcctgggccttgcagatctgaacaaaagctaggttctg
acctgaatctggaccttctgccaaaatgtctagcaaagtgttaattgggg
gagtctccagggggtacctgttttagatttcaaggggagaaagagttagt
tacaacatccacccataggtttgtttctctggaatctcctggtgggtggt
ggtagttagttggttagttggttagttggtagttggttggttggttggtt
ggtcggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69717606_69718452
seq2: B6Ng01-166N21.b_46_892

seq1  GAATTCAACAATGGAGTTGTCATGACCAACCGCCCACTTCGGGATAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAATGGAGTTGTCATGACCAACCGCCCACTTCGGGATAATGA  50

seq1  AATGTTTGAGGTATGTAAAATCCTGGAGTCTGACTGTGCTTCCTGCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGAGGTATGTAAAATCCTGGAGTCTGACTGTGCTTCCTGCCAAA  100

seq1  GATTTGGAGCTAAACGTAGGGATTGATCTTTGGCGGCAATATGCCAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGAGCTAAACGTAGGGATTGATCTTTGGCGGCAATATGCCAACAA  150

seq1  CTGGTGAAGAACCAAGGCTTTGAGGGCCTGTCTTCTGTTGTTATATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAAGAACCAAGGCTTTGAGGGCCTGTCTTCTGTTGTTATATTTCC  200

seq1  TGGACCTGTCTACTCTCACTCAACCCCAGATCCGGATCGACAAGCTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTGTCTACTCTCACTCAACCCCAGATCCGGATCGACAAGCTTGTA  250

seq1  GACAAGTGGTCTGGTTCCATCGAGATTGGTGTCACCACCCACAACCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTGGTCTGGTTCCATCGAGATTGGTGTCACCACCCACAACCCCAA  300

seq1  TAGCCTGGAGTACCCAGCCACCATGACCAACCTGCAGTCAGGTACCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGGAGTACCCAGCCACCATGACCAACCTGCAGTCAGGTACCAGCT  350

seq1  CTGGGTAGGGGTAGGGACACAGGCTTGGAGTTGGTGAGATCCAGACAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAGGGGTAGGGACACAGGCTTGGAGTTGGTGAGATCCAGACAGCC  400

seq1  TTTCCCTAACCAGGTGTCCATCTTTACCAGGCACCATCATGATGAGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTAACCAGGTGTCCATCTTTACCAGGCACCATCATGATGAGTGGC  450

seq1  TGTGGGATCCTGACCAACGGCAAAGGCACTCGGCGGGAGTACTGCGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGATCCTGACCAACGGCAAAGGCACTCGGCGGGAGTACTGCGAGTT  500

seq1  CAGTCTGGACGAGCTGCAGGTGAGTGTGGAGCACAGCAGCCTGGGCAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGGACGAGCTGCAGGTGAGTGTGGAGCACAGCAGCCTGGGCAGTC  550

seq1  CAGGGGAGCCCGGCCACCTGGGCCACCAGGCAGTGTCCCTTTCTGCATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAGCCCGGCCACCTGGGCCACCAGGCAGTGTCCCTTTCTGCATGA  600

seq1  GGCTTCTTCTGAGGAGGCAAGGCCGTCTGGCAGGAGCTAAGGTATGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTCTGAGGAGGCAAGGCCGTCTGGCAGGAGCTAAGGTATGCTCA  650

seq1  TTAGTAGCACCTTTTTTCCCTTTGGTGCTAGGAATGGAACCTAGGACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGCACCTTTTTTCCCTTTGGTGCTAGGAATGGAACCTAGGACCTT  700

seq1  GGACACGTGTGGCAAGTGCTCTAGCACTGAGTTACAGCTCTAGCCCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGTGTGGCAAGTGCTCTAGCACTGAGTTACAGCTCTAGCCCAATA  750

seq1  GCACTAAGTAGGCCGAGATTTTAGAGCAACAACAACAAAAAAGATTGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAAGTAGGCCGAGATTTTAGAGCAACAACAACAAAAAAGATTGTTG  800

seq1  TTGTTGTTGTTGTTGTTTTAATTTATTTATTTATTATATGTAAGTAC  847
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTGTTTTAATTTATTTATTTATTATATGTAAGTAC  847

seq1: chr11_69878996_69879603
seq2: B6Ng01-166N21.g_67_674 (reverse)

seq1  TACCAACCAACCAACCAACCAACCAACTACCAACTAACCAACTAACCAAC  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGACCAACCAACCAACCAACCAACTACCAACTAACCAACTAACCAAC  50

seq1  TAACTACCACCACCCACCAGGAGATTCCAGAGAAACAAACCTATGGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACCACCACCCACCAGGAGATTCCAGAGAAACAAACCTATGGGTGG  100

seq1  ATGTTGTAACTAACTCTTTCTCCCCTTGAAATCTAAAACAGGTACCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTAACTAACTCTTTCTCCCCTTGAAATCTAAAACAGGTACCCCCT  150

seq1  GGAGACTCCCCCAATTAACACTTTGCTAGACATTTTGGCAGAAGGTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTCCCCCAATTAACACTTTGCTAGACATTTTGGCAGAAGGTCCAG  200

seq1  ATTCAGGTCAGAACCTAGCTTTTGTTCAGATCTGCAAGGCCCAGGAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGTCAGAACCTAGCTTTTGTTCAGATCTGCAAGGCCCAGGAGTCA  250

seq1  AAATTTCCCTTGAGGTTTCTTTGCCCGGACACAGCCATTTGAGTGAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCCTTGAGGTTTCTTTGCCCGGACACAGCCATTTGAGTGAGTTT  300

seq1  GCCTCTGAGTTGGACCAGTTAGGTTTCCCGGGATAAGCATTTCGACCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGAGTTGGACCAGTTAGGTTTCCCGGGATAAGCATTTCGACCATT  350

seq1  GGATTTATGGCTTCTAACTTTGCTAGAACAGAATCCAAACCCAAGTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTATGGCTTCTAACTTTGCTAGAACAGAATCCAAACCCAAGTGAGT  400

seq1  TTATAGAGTTTAATAGGGGAGAAGCCTTTGATTTCCAGACCTGAAAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAGTTTAATAGGGGAGAAGCCTTTGATTTCCAGACCTGAAAATTC  450

seq1  TGGCTCTGCAGGCAACAGAGCATGGAAAGCGTCCACAGGTTAGCCGCCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGCAGGCAACAGAGCATGGAAAGCGTCCACAGGTTAGCCGCCGC  500

seq1  ATCTCATGGGGCTGTCGTCTACCAGGCAGTTACAGAGTTGACTGCGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATGGGGCTGTCGTCTACCAGGCAGTTACAGAGTTGACTGCGTGTT  550

seq1  CAAGACTGAGTCTGCCAAGCTGCGTCCGGGTGAAAGGCTGCACGAGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTGAGTCTGCCAAGCTGCGTCCGGGTGAAAGGCTGCACGAGATCA  600

seq1  CTGAATTC  608
      ||||||||
seq2  CTGAATTC  608