BAC Information

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BAC

Clone NameB6Ng01-167M11
Chromosome11 (Build37)
Map Location 81,461,864 - 81,597,604
singlet/doubletdoublet
Overlap geneAccn1
Upstream geneMyo1d, Tmem98, Spaca3, 1700071K01Rik
Downstream gene5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e, Cct6b, Ccdc16, Lig3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167M11.bB6Ng01-167M11.g
ACCDH959185DH959186
length1,2461,130
definitionDH959185|Mus musculus domesticus DNA, BAC clone: B6Ng01-167M11, 5' end.DH959186|Mus musculus domesticus DNA, BAC clone: B6Ng01-167M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,596,347 - 81,597,604)(81,461,864 - 81,463,013)
sequence
gaattctaagtaaaagaacaatgatgcttgaaaataatcaaagaaccaca
agacactgcagggatgagtcaggaacaaaatgagatcaaggacagaactt
ccaagagtcttttccttaccagtataatgggaacacaaacactcacaagt
gcatctgtaactccagttccagatagtacgacacccccaggatccaggca
cacacacaaacacacacacacacacacacacacacacacagaggatggag
tgggacatgagaatataagcagaggtggtgatttctgccctcacgctatg
gttccacagagcaatgccaagctctccctcctcttcctcgaggcttcccg
ttatagctgatgaagaaataagacagtgctccaaaattcagaagtttctt
tccaataatttccacaccgtgtgcctttctgctcagttctgaacctcagt
gatggcttgtgtggatgggtctggtaaggctgatgcagtctctttcacga
gattaggaaatttgcttggagaattaacagattggaatttatatatcttg
taagatctctcccaaagttgtcatcctgatatttggagagaaggcaatat
attcaggatggtaatgtccagttaccaatgggagcatcttgggtctacac
aagctagctgaaggacctctgtggtactttaaggtcagccctgtgacaca
ggctgtggctgccgcaatggggacagcagctgttatctggagctctgctg
atgaaagcaagcttcctccctgccacccctgcccctctcccctttccctg
cctgtgccacctgactggaatcacatcttatcagcacacaccatcttctc
ctgggagaaagggaagtcaggagggaaaaaagcttgacccaagacttgag
accctcagtctatctctgccacttgtttccatagtgattgtcatgagcaa
tgacctgccactcacttatctgtggctctttgtcctccatccattcctgc
atcttgcttacatccgagtatccaataggaaaaaaatataggctctgaaa
tgaaactgaaagctggagccccaagcactgcctcctctccccactccact
cccttgcacacacccacctcttccttgactgtgggaagaccttgtgcttg
tctttcatgaattagtctcttctctgaggggacccatctcgactggaaga
ccttcggtaatcgaaagaaattgtgttctctggccaagtgatgaga
gaattctgagttcgcagaatgttgcggaatgctagcctgtactgactctc
ccatgtgaggaagtgtcgtgtgtcaaaatattcagcggtgacgcatgaat
tagcagagatcaatttgtgtttaaggaatcttgacggagcaccccacagc
acaaatcaaagccatcaagcgaatgaaactattcatgcgattaacacacg
ctctgcacctggctatgtcgtgtgcagccgcatgaagctcaggttggcct
cccagaggtgagctgggattggttctgtttgcttactcactgttctgtct
gtgtgttctctgaggaggcacaagaaatggtcctctgggatgtgctgtag
attctggttaaaggccatgacatcccagagtttctgttagcttgagatga
gccaccgtttcaggccagttaggcacacatcctcgtctgatgctcataca
cactggctcttccgaagcagggccagtgaaccccactctctgctgtctct
gctgcttacactgagccaacactgagttgaggatgccacgtctggtatag
ctggtaaagctagaggtcctggccatgtcatctggctgccccctgggcag
gtgtatcaccaggtggcatctggagtgtgaggatctcaggtgggactcaa
tgaccctgtgatgctcaagtgatttcttagtacaaagccctgtgcctgag
cttctgcttagatgtcatgatagggcaagagtcctgtcccgaaccattga
tgtgacaaaggccttgacctctctcttaattctctttgtaggcagactag
ttccaggagctgcagtctggggctccagctcttgtctaactcagagagac
gtcatgtgtctagatctctattctcttccctctctcctctctcctctctc
cttgctttgctgtttagcccacatgactgaattccattatgtatcaagta
taagttgagcttatgctccattgagatgttgtattactcagttataaaga
agattgaattttttcattttaggaattatttgggactgcaactccagtag
tgaggatcggaccagaaacacaaatattgagtacttcccctcccatacga
acctacagattttctaacagaatgaaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_81596347_81597604
seq2: B6Ng01-167M11.b_50_1295 (reverse)

seq1  TCTCATCCCTTGGCCAG-GGACACAATTTCTTCTGGAT--CCGAAAGATT  47
      ||||||| ||||||||| | |||||||||||| | |||  ||||| |   
seq2  TCTCATCACTTGGCCAGAGAACACAATTTCTT-TCGATTACCGAAGG---  46

seq1  CCATCTCACAGCTGAGATGAGGTCACCTCAGAGAAGAGACCTAATTCATG  97
         |||  |||  |||||| |||| |||||||||||||| ||||||||||
seq2  ---TCTTCCAGTCGAGATG-GGTCCCCTCAGAGAAGAGA-CTAATTCATG  91

seq1  GAAGACAAGCACAAGGTCTTCCCACAGTCAGGGGAAGAGGTGGGTGTGTG  147
       |||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  AAAGACAAGCACAAGGTCTTCCCACAGTCA-AGGAAGAGGTGGGTGTGTG  140

seq1  CAGGGGAGTGGGAGTGGGGAGAAGGAGGGCAGTGCTTGGGGCTCCAGCTC  197
      || |||||| ||||||||||| |||| |||||||||||||||||||||| 
seq2  CAAGGGAGT-GGAGTGGGGAG-AGGA-GGCAGTGCTTGGGGCTCCAGCTT  187

seq1  TCAGGTTTCATTTCAGAGCCTATATTTTTTTCCTATTGGATACTCGGATG  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-GTTTCATTTCAGAGCCTATATTTTTTTCCTATTGGATACTCGGATG  236

seq1  TAAGCAAGATGCAGGAATGGATGGAGGACAAAGAGGCCACAGATAAGTGA  297
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAAGCAAGATGCAGGAATGGATGGAGGACAAAGA-GCCACAGATAAGTGA  285

seq1  GTGGCAGGTCATTGCTCATGACAATCACTATGGAAACAAGTGGCAGAGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGTCATTGCTCATGACAATCACTATGGAAACAAGTGGCAGAGAT  335

seq1  AGACTGAGGGTCTCAAGTCTTGGGTCAAGCTTTTTTCCCTCCTGACTTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGGGTCTCAAGTCTTGGGTCAAGCTTTTTTCCCTCCTGACTTCC  385

seq1  CTTTCTCCCAGGAGAAGATGGTGTGTGCTGATAAGATGTGATTCCAGTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCCAGGAGAAGATGGTGTGTGCTGATAAGATGTGATTCCAGTCA  435

seq1  GGTGGCACAGGCAGGGAAAGGGGAGAGGGGCAGGGGTGGCAGGGAGGAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACAGGCAGGGAAAGGGGAGAGGGGCAGGGGTGGCAGGGAGGAAG  485

seq1  CTTGCTTTCATCAGCAGAGCTCCAGATAACAGCTGCTGTCCCCATTGCGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTCATCAGCAGAGCTCCAGATAACAGCTGCTGTCCCCATTGCGG  535

seq1  CAGCCACAGCCTGTGTCACAGGGCTGACCTTAAAGTACCACAGAGGTCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACAGCCTGTGTCACAGGGCTGACCTTAAAGTACCACAGAGGTCCT  585

seq1  TCAGCTAGCTTGTGTAGACCCAAGATGCTCCCATTGGTAACTGGACATTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAGCTTGTGTAGACCCAAGATGCTCCCATTGGTAACTGGACATTA  635

seq1  CCATCCTGAATATATTGCCTTCTCTCCAAATATCAGGATGACAACTTTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTGAATATATTGCCTTCTCTCCAAATATCAGGATGACAACTTTGG  685

seq1  GAGAGATCTTACAAGATATATAAATTCCAATCTGTTAATTCTCCAAGCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATCTTACAAGATATATAAATTCCAATCTGTTAATTCTCCAAGCAA  735

seq1  ATTTCCTAATCTCGTGAAAGAGACTGCATCAGCCTTACCAGACCCATCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAATCTCGTGAAAGAGACTGCATCAGCCTTACCAGACCCATCCA  785

seq1  CACAAGCCATCACTGAGGTTCAGAACTGAGCAGAAAGGCACACGGTGTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCCATCACTGAGGTTCAGAACTGAGCAGAAAGGCACACGGTGTGG  835

seq1  AAATTATTGGAAAGAAACTTCTGAATTTTGGAGCACTGTCTTATTTCTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTGGAAAGAAACTTCTGAATTTTGGAGCACTGTCTTATTTCTTC  885

seq1  ATCAGCTATAACGGGAAGCCTCGAGGAAGAGGAGGGAGAGCTTGGCATTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTATAACGGGAAGCCTCGAGGAAGAGGAGGGAGAGCTTGGCATTG  935

seq1  CTCTGTGGAACCATAGCGTGAGGGCAGAAATCACCACCTCTGCTTATATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGAACCATAGCGTGAGGGCAGAAATCACCACCTCTGCTTATATT  985

seq1  CTCATGTCCCACTCCATCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTCCCACTCCATCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  1035

seq1  GTTTGTGTGTGTGCCTGGATCCTGGGGGTGTCGTACTATCTGGAACTGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTGTGTGCCTGGATCCTGGGGGTGTCGTACTATCTGGAACTGGA  1085

seq1  GTTACAGATGCACTTGTGAGTGTTTGTGTTCCCATTATACTGGTAAGGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGATGCACTTGTGAGTGTTTGTGTTCCCATTATACTGGTAAGGAA  1135

seq1  AAGACTCTTGGAAGTTCTGTCCTTGATCTCATTTTGTTCCTGACTCATCC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTTGGAAGTTCTGTCCTTGATCTCATTTTGTTCCTGACTCATCC  1185

seq1  CTGCAGTGTCTTGTGGTTCTTTGATTATTTTCAAGCATCATTGTTCTTTT  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGTCTTGTGGTTCTTTGATTATTTTCAAGCATCATTGTTCTTTT  1235

seq1  ACTTAGAATTC  1258
      |||||||||||
seq2  ACTTAGAATTC  1246

seq1: chr11_81461864_81463013
seq2: B6Ng01-167M11.g_71_1200

seq1  GAATTCTGAGTTCGCAGAATGTTGCGGAATGCTAGCCTGTACTGACTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTTCGCAGAATGTTGCGGAATGCTAGCCTGTACTGACTCTC  50

seq1  CCATGTGAGGAAGTGTCGTGTGTCAAAATATTCAGCGGTGACGCATGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAGGAAGTGTCGTGTGTCAAAATATTCAGCGGTGACGCATGAAT  100

seq1  TAGCAGAGATCAATTTGTGTTTAAGGAATCTTGACGGAGCACCCCACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAGATCAATTTGTGTTTAAGGAATCTTGACGGAGCACCCCACAGC  150

seq1  ACAAATCAAAGCCATCAAGCGAATGAAACTATTCATGCGATTAACACACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCAAAGCCATCAAGCGAATGAAACTATTCATGCGATTAACACACG  200

seq1  CTCTGCACCTGGCTATGTCGTGTGCAGCCGCATGAAGCTCAGGTTGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACCTGGCTATGTCGTGTGCAGCCGCATGAAGCTCAGGTTGGCCT  250

seq1  CCCAGAGGTGAGCTGGGATTGGTTCTGTTTGCTTACTCACTGTTCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGTGAGCTGGGATTGGTTCTGTTTGCTTACTCACTGTTCTGTCT  300

seq1  GTGTGTTCTCTGAGGAGGCACAAGAAATGGTCCTCTGGGATGTGCTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTCTCTGAGGAGGCACAAGAAATGGTCCTCTGGGATGTGCTGTAG  350

seq1  ATTCTGGTTAAAGGCCATGACATCCCAGAGTTTCTGTTAGCTTGAGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGTTAAAGGCCATGACATCCCAGAGTTTCTGTTAGCTTGAGATGA  400

seq1  GCCACCGTTTCAGGCCAGTTAGGCACACATCCTCGTCTGATGCTCATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCGTTTCAGGCCAGTTAGGCACACATCCTCGTCTGATGCTCATACA  450

seq1  CACTGGCTCTTCCGAAGCAGGGCCAGTGAACCCCACTCTCTGCTGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCTCTTCCGAAGCAGGGCCAGTGAACCCCACTCTCTGCTGTCTCT  500

seq1  GCTGCTTACACTGAGCCAACACTGAGTTGAGGATGCCACGTCTGGTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTACACTGAGCCAACACTGAGTTGAGGATGCCACGTCTGGTATAG  550

seq1  CTGGTAAAGCTAGAGGTCCTGGCCATGTCATCTGGCTGCCCCCTGGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAAGCTAGAGGTCCTGGCCATGTCATCTGGCTGCCCCCTGGGCAG  600

seq1  GTGTATCACCAGGTGGCATCTGGAGTGTGAGGATCTCAGGTGGGACTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCACCAGGTGGCATCTGGAGTGTGAGGATCTCAGGTGGGACTCAA  650

seq1  TGACCCTGTGATGCTCAAGTGATTTCTTAGTACAAAGCCCTGTGCCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGTGATGCTCAAGTGATTTCTTAGTACAAAGCCCTGTGCCTGAG  700

seq1  CTTCTGCTTAGATGTCATGATAGGGCAAGAGTCCTGTCCCGAACCATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTTAGATGTCATGATAGGGCAAGAGTCCTGTCCCGAACCATTGA  750

seq1  TGTGACAAAGGCCTTGACCTCTCTCTTAATTCTCTTTGTAGGCAGACTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAAAGGCCTTGACCTCTCTCTTAATTCTCTTTGTAGGCAGACTAG  800

seq1  TTCCAGGAGCTGCAGTCTGGGGCTCCAGCTCTTGTCTAACTCAGAGAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAGCTGCAGTCTGGGGCTCCAGCTCTTGTCTAACTCAGAGAGAC  850

seq1  GTCATGTGTCTAGATCTCTATTCTCTTCCCTCTCTCCTCTCTCCTCTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGTCTAGATCTCTATTCTCTTCCCTCTCTCCTCTCTCCTCTCTC  900

seq1  CTTGCTTTGCTGTTTAGCCCACAATGACTGAATTCCATTATGTATCAAGT  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTGCTTTGCTGTTTAGCCCAC-ATGACTGAATTCCATTATGTATCAAGT  949

seq1  ATAAGTTGAGCTTATGCTCCATTGAAGATGGTGTATTACTCAGTTATAAA  1000
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  ATAAGTTGAGCTTATGCTCCATTG-AGATGTTGTATTACTCAGTTATAAA  998

seq1  GAAGAATGAAATTGTGTCATTTTTAGGAAATTATATGGGACTGCAAACCC  1050
      ||||| || |||| | ||| ||||||| |||||| ||||||||| ||| |
seq2  GAAGATTG-AATTTTTTCA-TTTTAGG-AATTATTTGGGACTGC-AACTC  1044

seq1  CAGTAAGTGAAAGAAATCGGACACAGAAACACAAATATTGTAGTACTTCC  1100
      |||| |||||     ||||||| ||||||||||||||||| |||||||||
seq2  CAGT-AGTGA---GGATCGGAC-CAGAAACACAAATATTG-AGTACTTCC  1088

seq1  CCTCCCCATATACGAAACTACAGATTTTTCTAAACAGAGATATGAAGGTA  1150
      ||||||   ||||||| ||||||| |||||| ||||||   |||||||||
seq2  CCTCCC---ATACGAACCTACAGA-TTTTCT-AACAGA---ATGAAGGTA  1130