BAC Information

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BAC

Clone NameB6Ng01-168K12
Chromosome11 (Build37)
Map Location 118,509,174 - 118,644,047
singlet/doubletdoublet
Overlap geneD11Bwg0517e
Upstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik
Downstream geneEnpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168K12.bB6Ng01-168K12.g
ACCDH959839DH959840
length1,171451
definitionDH959839|Mus musculus domesticus DNA, BAC clone: B6Ng01-168K12, 5' end.DH959840|Mus musculus domesticus DNA, BAC clone: B6Ng01-168K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,642,877 - 118,644,047)(118,509,174 - 118,509,602)
sequence
gaattcctttctcctttccagacttacctctgccaccacgggctccacac
caccatgcctgccttcatttcagtcagagtcataccctgtttaatggcca
gatggactttaccttaaaatgggccttctatcctcaagggactcaatatg
tagcctctttgttctgtggatccaagacgatcccaggaaagctgatgttc
agtgtcctggggttttttcaggacattgtcctgatgccagatgaccacag
gaggaggtaccattttagtgtcttctacctgttgggacagatgctcagac
ttcacatgttgacgctgtcactgtcatggggtttcctgttggaaccgtta
tcatcacccctattcaaaggattcagtgggaagcttggaacatcagtcaa
cctgcccagatctcaccatccaggagtgacagctgagacgaccctagggg
gccacagtgctcccagataccccagttgaacgtgtcttacgatgacgatg
acatgacggctcatgggctctccccaacgggtaaacagtgtttttccttc
ttgccagttttgattcaggttgtgctgagccccgaaattcaggctgaagg
attgaattgccgtcaaggtgaaaagacctgtctctggggagggtttgaac
acacttccccggctttccttctgtccccggcttgatgcctctgccacgtt
gatgcgcttgtctgccaggctcagagcttgctgaaagtgataacttcttc
gcagagcatcatcctctgagattgttacccatactgacagtccctggggt
tcagggttgactacacttgactgagccgaataaattagcataaaacatgt
aaaacccaatttcctaatgtagtttctttctcatttactacccaggtgtt
tagatttaatttcttccaaatgatatccctaaacatcattatgtcctaat
aattgtgcgttttgatggcaaacagccctaatgaatcgaggcaggcaagt
cgaaacttctgtgagaaactgcggctttgggtgagccgtggggcccttga
gagcggtgacagggagcttggtgttctcgagagatgtgcgtcctaaccag
ccttctaattgaagctgcttgcccgaattaagcgaggtcggtaacacgcc
ttctctaaaagatagtttttt
gaattcacacagccaggtgggtgaaatcgttttttaaggtgtgtccttag
tttctgtgtggggtgaatagaaaagtcacacaacaccctgaagatcccag
cactcctgcagcaagatggcaggccaagataggagactctctgggagctc
atgggccagctggtctggtacaatgacgaagcaacagagaccctttctca
acaaggcagaaggtgaataacacccaaggttaacctctgacctctgtatg
tgtgccatgatacatgcaggcaagccctgagctcacaggaatgctctctc
tctctgtctgtctctctctgtgtttctctctctcattctctctctctccc
tctccttctgtgtctcctctctctctctctctctctctctctctctctct
ctctctctctctcacacacacacacacacactatatctctctctgtctct
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_118642877_118644047
seq2: B6Ng01-168K12.b_44_1214 (reverse)

seq1  AAAAAACTA-CTTTTAGAGAA-GCGTGTAACAGACTTCGC-TAAATCGGG  47
      ||||||||| ||||||||||| |||||| || ||| |||| ||| |||||
seq2  AAAAAACTATCTTTTAGAGAAGGCGTGTTACCGACCTCGCTTAATTCGGG  50

seq1  CCAGCAGCCTTCAATTAGAA-GCTGG-TGGGACGGCAACATCTCTCGAGA  95
      | ||||| |||||||||||| ||||| | |||||   |||||||||||||
seq2  CAAGCAG-CTTCAATTAGAAGGCTGGTTAGGACG--CACATCTCTCGAGA  97

seq1  ACACC-AGCTCCCTGTCACCGCCTCCTCAAGGGCCCCACGGCTCACCCAA  144
      ||||| ||||||||||||||||   |||||||||||||||||||||||||
seq2  ACACCAAGCTCCCTGTCACCGC--TCTCAAGGGCCCCACGGCTCACCCAA  145

seq1  GGCCGCAGTTTCTCCACAGAAGTTTCGACTTGCCTGCCTCGATTCATTAG  194
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCCGCAGTTTCT-CACAGAAGTTTCGACTTGCCTGCCTCGATTCATTAG  194

seq1  GGCTGTTTGCCATCAAAACGCACAATTATTAGGACATAATGATGTTTAGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTGCCATCAAAACGCACAATTATTAGGACATAATGATGTTTAGG  244

seq1  GATATCATTTGGAAGAAATTAAATCTAAACACCTGGGTAGTAAATGAGAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATTTGGAAGAAATTAAATCTAAACACCTGGGTAGTAAATGAGAA  294

seq1  AGAAACTACATTAGGAAATTGGGTTTTACATGTTTTATGCTAATTTATTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTACATTAGGAAATTGGGTTTTACATGTTTTATGCTAATTTATTC  344

seq1  GGCTCAGTCAAGTGTAGTCAACCCTGAACCCCAGGGACTGTCAGTATGGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTCAAGTGTAGTCAACCCTGAACCCCAGGGACTGTCAGTATGGG  394

seq1  TAACAATCTCAGAGGATGATGCTCTGCGAAGAAGTTATCACTTTCAGCAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATCTCAGAGGATGATGCTCTGCGAAGAAGTTATCACTTTCAGCAA  444

seq1  GCTCTGAGCCTGGCAGACAAGCGCATCAACGTGGCAGAGGCATCAAGCCG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAGCCTGGCAGACAAGCGCATCAACGTGGCAGAGGCATCAAGCCG  494

seq1  GGGACAGAAGGAAAGCCGGGGAAGTGTGTTCAAACCCTCCCCAGAGACAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGAAGGAAAGCCGGGGAAGTGTGTTCAAACCCTCCCCAGAGACAG  544

seq1  GTCTTTTCACCTTGACGGCAATTCAATCCTTCAGCCTGAATTTCGGGGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCACCTTGACGGCAATTCAATCCTTCAGCCTGAATTTCGGGGCT  594

seq1  CAGCACAACCTGAATCAAAACTGGCAAGAAGGAAAAACACTGTTTACCCG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAACCTGAATCAAAACTGGCAAGAAGGAAAAACACTGTTTACCCG  644

seq1  TTGGGGAGAGCCCATGAGCCGTCATGTCATCGTCATCGTAAGACACGTTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGAGCCCATGAGCCGTCATGTCATCGTCATCGTAAGACACGTTC  694

seq1  AACTGGGGTATCTGGGAGCACTGTGGCCCCCTAGGGTCGTCTCAGCTGTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGGTATCTGGGAGCACTGTGGCCCCCTAGGGTCGTCTCAGCTGTC  744

seq1  ACTCCTGGATGGTGAGATCTGGGCAGGTTGACTGATGTTCCAAGCTTCCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGGATGGTGAGATCTGGGCAGGTTGACTGATGTTCCAAGCTTCCC  794

seq1  ACTGAATCCTTTGAATAGGGGTGATGATAACGGTTCCAACAGGAAACCCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATCCTTTGAATAGGGGTGATGATAACGGTTCCAACAGGAAACCCC  844

seq1  ATGACAGTGACAGCGTCAACATGTGAAGTCTGAGCATCTGTCCCAACAGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTGACAGCGTCAACATGTGAAGTCTGAGCATCTGTCCCAACAGG  894

seq1  TAGAAGACACTAAAATGGTACCTCCTCCTGTGGTCATCTGGCATCAGGAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGACACTAAAATGGTACCTCCTCCTGTGGTCATCTGGCATCAGGAC  944

seq1  AATGTCCTGAAAAAACCCCAGGACACTGAACATCAGCTTTCCTGGGATCG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTGAAAAAACCCCAGGACACTGAACATCAGCTTTCCTGGGATCG  994

seq1  TCTTGGATCCACAGAACAAAGAGGCTACATATTGAGTCCCTTGAGGATAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGATCCACAGAACAAAGAGGCTACATATTGAGTCCCTTGAGGATAG  1044

seq1  AAGGCCCATTTTAAGGTAAAGTCCATCTGGCCATTAAACAGGGTATGACT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCATTTTAAGGTAAAGTCCATCTGGCCATTAAACAGGGTATGACT  1094

seq1  CTGACTGAAATGAAGGCAGGCATGGTGGTGTGGAGCCCGTGGTGGCAGAG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGAAATGAAGGCAGGCATGGTGGTGTGGAGCCCGTGGTGGCAGAG  1144

seq1  GTAAGTCTGGAAAGGAGAAAGGAATTC  1171
      |||||||||||||||||||||||||||
seq2  GTAAGTCTGGAAAGGAGAAAGGAATTC  1171

seq1: chr11_118509174_118509602
seq2: B6Ng01-168K12.g_69_519

seq1  GAATTCACACAGCCAGGTGGGTGAAATCGTTTTTTAAGGTGTGTCCTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAGCCAGGTGGGTGAAATCGTTTTTTAAGGTGTGTCCTTAG  50

seq1  TTTCTGTGTGGGGTGAATAGAAAAGTCACACAACACCCTGAAGATCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTGGGGTGAATAGAAAAGTCACACAACACCCTGAAGATCCCAG  100

seq1  CACTCCTGCAGCAAGATGGCAGGCCAAGATAGGAGACTCTCTGGGAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGCAGCAAGATGGCAGGCCAAGATAGGAGACTCTCTGGGAGCTC  150

seq1  ATGGGCCAGCTGGTCTGGTACAATGACGAAGCAACAGAGACCCTTTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCAGCTGGTCTGGTACAATGACGAAGCAACAGAGACCCTTTCTCA  200

seq1  ACAAGGCAGAAGGTGAATAACACCCAAGGTTAACCTCTGACCTCTGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCAGAAGGTGAATAACACCCAAGGTTAACCTCTGACCTCTGTATG  250

seq1  TGTGCCATGATACATGCAGGCAAGCCCTGAGCTCACAGGAATGCTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATGATACATGCAGGCAAGCCCTGAGCTCACAGGAATGCTCTCTC  300

seq1  TCTCTGTCTGTCTCTCTCTGTGTTTCTCTCTCTCATTCTCTCTCTCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTGTCTCTCTCTGTGTTTCTCTCTCTCATTCTCTCTCTCTCCC  350

seq1  TCTCCTTCTGTGTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCTGTGTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  400

seq1  CTCTCTCTCTCTC----------------------TCTCTCTCTCTCTCT  428
      |||||||||||||                      ||||||||| |||||
seq2  CTCTCTCTCTCTCACACACACACACACACACTATATCTCTCTCTGTCTCT  450

seq1  C  429
      |
seq2  C  451