BAC Information

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BAC

Clone NameB6Ng01-168P09
Chromosome11 (Build37)
Map Location 67,889,111 - 68,057,642
singlet/doubletdoublet
Overlap geneStx8, Ntn1
Upstream geneMyh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16
Downstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168P09.bB6Ng01-168P09.g
ACCDH960063DH960064
length1,1401,131
definitionDH960063|Mus musculus domesticus DNA, BAC clone: B6Ng01-168P09, 5' end.DH960064|Mus musculus domesticus DNA, BAC clone: B6Ng01-168P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,889,111 - 67,890,259)(68,056,507 - 68,057,642)
sequence
gaattctcggaatccccagttcttttttttttttttttttttcccccctg
tctgttggaagatggcacacttgccatgctcatgggagaaaatggcatgg
gtcttttgttgcatgctttcttgagatccagatattgtcctgcttcattt
tcttagcccatcttttctagctgggttagaaagaagaatcaactaacgga
tattcctttgaccatgttactaaacacacatgccagagccctggtgaatg
gaaggattcgtgagtgagtatggctttacacctcccatccaacatctact
tccacagtttggatgcttagttcattggtccaggcttcagtgaaatccct
tgaaagactggtccataaccctggtagttttttatctacagagagggtgt
tccacaagaaaatctataatgattccatcttctaactggctgtctcttcc
taactatggcaagtgaattgatcatgaaaagattactaaatgggcagagg
tgacgatggcttactattgccagcagttcctgcttctgttgttctgcctc
aaagagagtccaggacttggagtatagctcagtggtagaaagaacatttg
cattgcaagttctagtgccccgcttctgcagaccctgaaaacaaaaacaa
acagcctagtatgtgctctgttcaattcaatagtcgccataaagttctag
atttttctttctctcccactttgcttttggccttaaagctcttttggtcc
aacttttaattttttgtatctaaataatactttttaaaatgtagttctgg
ggactgcagagatggcccagagattaaataaagcatttgctcctcttaca
caggacccaggtcagttcccagtatccacatggcagctcacagccctcct
taactctagttccaggggatctgacgtgttcttctttgggcaccttggtc
agctaaaacacacacacacacacacacacacacacacacagctctaattg
tcttcagttacttggcaatattattattctcataattaatcttcatgcct
aagcagcacttcaaagccagcattccttcttactagcccatagaatttgc
tatttaatgtaattttcgatttgagcttctaattgaattt
gaattccttgggggttctgaggaggctgtgcacttgtccgcttattcaat
ttctgcctgttcatccatcccagggtgctgggtaacagagctgagtagac
acagcactgtggctcccagggacccttcgagctgtgctgtgtgaggaaga
catctaagaacagtgaatggttccaattccattttttaactgttagccaa
cccccagatccacagatactgatgtcacctcctgtggcctgacaggcgtt
gctgagagcctgctgggtcttcgctgctttagaaatgaagcctcaggtcc
aggggggcttgctgatcttccagatgggctgctgtttcccagaggcacag
gtggcagataagagaggaagatatactggtccctgggtatccaggacctg
aggttattagagtctgcaaatgcttaagtcctttccataagctagtagag
tgtttacatggaatcgtcttacatctttccatatactgtaactcatctct
taatagcacatgtctagaatgacacacatactgtttatatatagttttaa
atttaatttttaaattatgacggtgtatgtgcctgtgtgtgtgtatgtgt
ctaggtgtatgcacatgtgagtacagtacttgtaaaggccagaagagggc
atcagattccctggagctggagttaacaggagaggtgggtgctgggacca
gagcttaggtcctccagaatagccacaagcactcgtactcactgagccag
ctctttcaagagcggttttctttagagaatgatgataggaaaatgtcaat
gtttaatacacatacccctttttctaaaatatttttatctatggtttgtt
tagtttgtataggcagagcctgtggttgatggagggctgattgaattaga
atcggtaacaagattggtaatttggagtcttcaagaaagaaaggaaaaaa
aaagccaacctctaaaacagtggttcagacccccttggtgatgaacaacc
cttttacaggaattgcctaagacatcagaaaaccagattatttacatatg
gtctcacacagtacacccattcaattatgagagtagtcgataattaatct
atggctgggattcaccccagcctgagaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_67889111_67890259
seq2: B6Ng01-168P09.b_48_1187

seq1  GAATTCTCGGAATCCCCAGTTCTTTTTTTTTTTTTTTTTTTTCCCCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGGAATCCCCAGTTCTTTTTTTTTTTTTTTTTTTTCCCCCCTG  50

seq1  TCTGTTGGAAGATGGCACACTTGCCATGCTCATGGGAGAAAATGGCATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGAAGATGGCACACTTGCCATGCTCATGGGAGAAAATGGCATGG  100

seq1  GTCTTTTGTTGCATGCTTTCTTGAGATCCAGATATTGTCCTGCTTCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGTTGCATGCTTTCTTGAGATCCAGATATTGTCCTGCTTCATTT  150

seq1  TCTTAGCCCATCTTTTCTAGCTGGGTTAGAAAGAAGAATCAACTAACGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCCCATCTTTTCTAGCTGGGTTAGAAAGAAGAATCAACTAACGGA  200

seq1  TATTCCTTTGACCATGTTACTAAACACACATGCCAGAGCCCTGGTGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTTGACCATGTTACTAAACACACATGCCAGAGCCCTGGTGAATG  250

seq1  GAAGGATTCGTGAGTGAGTATGGCTTTACACCTCCCATCCAACATCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATTCGTGAGTGAGTATGGCTTTACACCTCCCATCCAACATCTACT  300

seq1  TCCACAGTTTGGATGCTTAGTTCATTGGTCCAGGCTTCAGTGAAATCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGTTTGGATGCTTAGTTCATTGGTCCAGGCTTCAGTGAAATCCCT  350

seq1  TGAAAGACTGGTCCATAACCCTGGTAGTTTTTTATCTACAGAGAGGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACTGGTCCATAACCCTGGTAGTTTTTTATCTACAGAGAGGGTGT  400

seq1  TCCACAAGAAAATCTATAATGATTCCATCTTCTAACTGGCTGTCTCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAGAAAATCTATAATGATTCCATCTTCTAACTGGCTGTCTCTTCC  450

seq1  TAACTATGGCAAGTGAATTGATCATGAAAAGATTACTAAATGGGCAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATGGCAAGTGAATTGATCATGAAAAGATTACTAAATGGGCAGAGG  500

seq1  TGACGATGGCTTACTATTGCCAGCAGTTCCTGCTTCTGTTGTTCTGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGATGGCTTACTATTGCCAGCAGTTCCTGCTTCTGTTGTTCTGCCTC  550

seq1  AAAGAGAGTCCAGGACTTGGAGTATAGCTCAGTGGTAGAAAGAACATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGTCCAGGACTTGGAGTATAGCTCAGTGGTAGAAAGAACATTTG  600

seq1  CATTGCAAGTTCTAGTGCCCCGCTTCTGCAGACCCTGAAAACAAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAAGTTCTAGTGCCCCGCTTCTGCAGACCCTGAAAACAAAAACAA  650

seq1  ACAGCCTAGTATGTGCTCTGTTCAATTCAATAGTCGCCATAAAGTTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTAGTATGTGCTCTGTTCAATTCAATAGTCGCCATAAAGTTCTAG  700

seq1  ATTTTTCTTTCTCTCCCACTTTGCTTTTGGCCTTAAAGCTCTTTTGGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTTCTCTCCCACTTTGCTTTTGGCCTTAAAGCTCTTTTGGTCC  750

seq1  AACTTTTAATTTTTTGTATCTAAATAATACTTTTTAAAATGTAGTTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAATTTTTTGTATCTAAATAATACTTTTTAAAATGTAGTTCTGG  800

seq1  GGACTGCAGAGATGGCCCAGAGATTAAATAAAGCATTTGCTCCTCTTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCAGAGATGGCCCAGAGATTAAATAAAGCATTTGCTCCTCTTACA  850

seq1  CAGGACCCAGGTTCAGTTCCCAGTATCCACATGGCAGCTCACAGCCCTCC  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCCAGG-TCAGTTCCCAGTATCCACATGGCAGCTCACAGCCCTCC  899

seq1  TTAACTCTAGTTCCAGGGGATCTGACGTGTTCTTCTGTGGGCACC-TGGT  949
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  TTAACTCTAGTTCCAGGGGATCTGACGTGTTCTTCTTTGGGCACCTTGGT  949

seq1  CAGCTAAAACACACACACACACACACACACACACACACACAGCTCTAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAAACACACACACACACACACACACACACACACACAGCTCTAATT  999

seq1  GTC-TCAGTTAACTTGGCATTATTAATTATTCTTCATTATTATTCTTCAT  1048
      ||| |||||| |||||||| |||| ||||||| |||| |||| |||||| 
seq2  GTCTTCAGTT-ACTTGGCAATATT-ATTATTC-TCATAATTAATCTTCA-  1045

seq1  TGCCTAAGCAGCACTTCCAAAGCCAGCATTCTTTCCTTACTAGCCCATAG  1098
      |||||||||||||||| |||||||||||||| || |||||||||||||||
seq2  TGCCTAAGCAGCACTT-CAAAGCCAGCATTCCTT-CTTACTAGCCCATAG  1093

seq1  AATTTGCTATTTAATGTTATTTTTTGAATTTGAGCTCTTAAAATTGAATT  1148
      ||||||||||||||||| |  ||||  |||||||  |||  |||||||||
seq2  AATTTGCTATTTAATGTAA--TTTTCGATTTGAG--CTTCTAATTGAATT  1139

seq1  T  1149
      |
seq2  T  1140

seq1: chr11_68056507_68057642
seq2: B6Ng01-168P09.g_69_1199 (reverse)

seq1  CAGTTCCTCAAGCTGTGGTGACTCCCAGCCATAGATT-ATTATTGTTGCT  49
      ||||| |||| |||| ||||| ||||||||||||||| ||||| |   ||
seq2  CAGTT-CTCAGGCTGGGGTGAATCCCAGCCATAGATTAATTATCG--ACT  47

seq1  ACT-TCATAA-TGAATGTTGTTACTGTTGTG-GACCATAATGTAAAT-AT  95
      ||| |||||| ||||||    ||||| |||| |||||| |||||||| ||
seq2  ACTCTCATAATTGAATGGGTGTACTG-TGTGAGACCAT-ATGTAAATAAT  95

seq1  CTGTGTTTTCTGATGGTCTTAGGCAATTCCTGTAAAAGGGTTGTTCAATC  145
      ||| |||||||||| ||||||||||||||||||||||||||||||| |||
seq2  CTG-GTTTTCTGAT-GTCTTAGGCAATTCCTGTAAAAGGGTTGTTC-ATC  142

seq1  ACCAAGGGGGTCTTGAACCACTGTTTTAGAGGTTGGCTTTTTTTTTTCCT  195
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  ACCAAGGGGGTC-TGAACCACTGTTTTAGAGGTTGGC-TTTTTTTTTCCT  190

seq1  TTCTTTCTTGAAGACTCCAAATTACCAATCTTGTTACCGATTCTAATTCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTGAAGACTCCAAATTACCAATCTTGTTACCGATTCTAATTCA  240

seq1  ATCAGCCCTCCATCAACCACAGGCTCTGCCTATACAAACTAAACAAACCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCCTCCATCAACCACAGGCTCTGCCTATACAAACTAAACAAACCA  290

seq1  TAGATAAAAATATTTTAGAAAAAGGGGTATGTGTATTAAACATTGACATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAAAATATTTTAGAAAAAGGGGTATGTGTATTAAACATTGACATT  340

seq1  TTCCTATCATCATTCTCTAAAGAAAACCGCTCTTGAAAGAGCTGGCTCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATCATCATTCTCTAAAGAAAACCGCTCTTGAAAGAGCTGGCTCAG  390

seq1  TGAGTACGAGTGCTTGTGGCTATTCTGGAGGACCTAAGCTCTGGTCCCAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACGAGTGCTTGTGGCTATTCTGGAGGACCTAAGCTCTGGTCCCAG  440

seq1  CACCCACCTCTCCTGTTAACTCCAGCTCCAGGGAATCTGATGCCCTCTTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCTCTCCTGTTAACTCCAGCTCCAGGGAATCTGATGCCCTCTTC  490

seq1  TGGCCTTTACAAGTACTGTACTCACATGTGCATACACCTAGACACATACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTACAAGTACTGTACTCACATGTGCATACACCTAGACACATACA  540

seq1  CACACACAGGCACATACACCGTCATAATTTAAAAATTAAATTTAAAACTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGGCACATACACCGTCATAATTTAAAAATTAAATTTAAAACTA  590

seq1  TATATAAACAGTATGTGTGTCATTCTAGACATGTGCTATTAAGAGATGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAACAGTATGTGTGTCATTCTAGACATGTGCTATTAAGAGATGAG  640

seq1  TTACAGTATATGGAAAGATGTAAGACGATTCCATGTAAACACTCTACTAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTATATGGAAAGATGTAAGACGATTCCATGTAAACACTCTACTAG  690

seq1  CTTATGGAAAGGACTTAAGCATTTGCAGACTCTAATAACCTCAGGTCCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGAAAGGACTTAAGCATTTGCAGACTCTAATAACCTCAGGTCCTG  740

seq1  GATACCCAGGGACCAGTATATCTTCCTCTCTTATCTGCCACCTGTGCCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCAGGGACCAGTATATCTTCCTCTCTTATCTGCCACCTGTGCCTC  790

seq1  TGGGAAACAGCAGCCCATCTGGAAGATCAGCAAGCCCCCCTGGACCTGAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAACAGCAGCCCATCTGGAAGATCAGCAAGCCCCCCTGGACCTGAG  840

seq1  GCTTCATTTCTAAAGCAGCGAAGACCCAGCAGGCTCTCAGCAACGCCTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATTTCTAAAGCAGCGAAGACCCAGCAGGCTCTCAGCAACGCCTGT  890

seq1  CAGGCCACAGGAGGTGACATCAGTATCTGTGGATCTGGGGGTTGGCTAAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCACAGGAGGTGACATCAGTATCTGTGGATCTGGGGGTTGGCTAAC  940

seq1  AGTTAAAAAATGGAATTGGAACCATTCACTGTTCTTAGATGTCTTCCTCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAAATGGAATTGGAACCATTCACTGTTCTTAGATGTCTTCCTCA  990

seq1  CACAGCACAGCTCGAAGGGTCCCTGGGAGCCACAGTGCTGTGTCTACTCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACAGCTCGAAGGGTCCCTGGGAGCCACAGTGCTGTGTCTACTCA  1040

seq1  GCTCTGTTACCCAGCACCCTGGGATGGATGAACAGGCAGAAATTGAATAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTTACCCAGCACCCTGGGATGGATGAACAGGCAGAAATTGAATAA  1090

seq1  GCGGACAAGTGCACAGCCTCCTCAGAACCCCCAAGGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCGGACAAGTGCACAGCCTCCTCAGAACCCCCAAGGAATTC  1131