BAC Information

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BAC

Clone NameB6Ng01-169G19
Chromosome11 (Build37)
Map Location 19,893,745 - 20,013,750
singlet/doubletdoublet
Overlap geneSpred2, Actr2
Upstream geneMeis1, LOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937
Downstream geneRab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035, Peli1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169G19.bB6Ng01-169G19.g
ACCDH960407DH960408
length1,1031,017
definitionDH960407|Mus musculus domesticus DNA, BAC clone: B6Ng01-169G19, 5' end.DH960408|Mus musculus domesticus DNA, BAC clone: B6Ng01-169G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,893,745 - 19,894,863)(20,012,730 - 20,013,750)
sequence
gaattcattttacaaagcagggaaggagaaaggcagggagttttccctct
atactgtttgatttcaagcaggtatttgactgtagagtcctgctcaggca
gtgtgtggagtagctgaggaactttggtgggccacagataggaagtggtt
gtctcctggtattacaactgaatatctagacatcagacatgcccacgtct
ggttgtaagctcctccctccctcctctcctgtgaaggaaggcccttgtta
ggagtaatctgcttggaaggccagaggcctgtactgaggtacagtcagcc
cttgtaccctgggagcaaagggctgggttaatctctaataaatttatact
tatgtggcacacttgatgtaggtctctacccttttcatgcctacttcatc
ccctcagatgaaggaggcacagctgaaacttcagaaagtaaaaagcatgc
ttttagccatggtgtggagagcctcagttcctatgtcagccattgcctgt
ggcgttggtgcccttgtggaatgtttgacgaagtatagtgtataccaata
attactaatcttagggattcttattgtggaattggtgtcatatagggaga
aaatgtggggttctccagaattgcttacatatatataatctaaacacatg
gcacccagtaggttttattattgttgatgttgtacatggcacccagtagg
tttactgttgttatcactactactgctatatttgggggcatgtgtcatgg
cacatgtgtggagaccaggaggacatcttaagggaatcggctgtctcctt
tatcacatagatcccagagatgattggttggtgacatgtgcctctgcttg
ccgcgtcatctcttatccagtgttctcagtcctctctaggttctgaagaa
caggctcattaaatcttgagtgagcgtagagcagagtacgggtgtgatct
gtgccatctgcatgaattcttcgtgttagcctgtgaacctccatttgggc
acctattaatggaaaggcagtccgcctgtaaactaaactcatgctgtgga
tccagccagcgttgagggcctacaagttgttacctgtgcgctggattccc
tgg
gaattcacagaaatccaactgcctctacttgtgtgctgggattgaaagca
agttcaccactatgcgctaagtgaaagcattatctttcttttttgacagg
gtttcactttatagctctggctgacctgaaacttgctatgtagaccaggc
tggcctccaacttagaaatccgtctgcttctgcctcccaagtgctgggat
taaaggcgaacgccaacagtgcccgggtgcatattcaatttcttaaagag
gtgcgtgtaacacttgtccctgtttccaagggaggttacagaggacctca
attttaaagtctgcatttggcaacatggtgagttcctgtttgagaaaatc
aaagagggaagtggtgaagcagaaagaaacgaaagcatcccgccaggctc
ctagggctgcatgcaactggaggtgtggaataaaccggaggtttgaaact
tgtaggtgtatccacccaggcctaggagcaatgacacatcatgcctcggg
acctccaggtggctttcggtcttcctagccggctgctccacccttctcca
ctgccgtcccgccacacaccctccggccttcacctgcctgcctcctgtac
agccggcccggccgcgccctaggtcccgagacaacttggtcagagccgcc
gccccaccagccaagcgcagccccggaagcagaacgaggcgagagggcgc
gcccgggtccgcgccggacagctctcattggccttctcggctgccagtcc
ccgctcttcttttctctctctgcaccgccctcttggaacggctgccgggc
ggggacttcccggtttgggcggagcggcgggccgagggcggggccgtgtg
gaggaggaagcagccaggccgggcggcggctcatcaggacgaaccatgga
cagcagggcaggaagttggtggtgtgcgacaacggcactggggtaaggcc
cggcggggcggcgcgtgtgtgtgtgggtgcccgcggtccttcggctgcct
gctggtgcttcgggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_19893745_19894863
seq2: B6Ng01-169G19.b_46_1148

seq1  GAATTCATTTTACAAAGCAGGGAAGGAGAAAGGCAGGGAGTTTTCCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTACAAAGCAGGGAAGGAGAAAGGCAGGGAGTTTTCCCTCT  50

seq1  ATACTGTTTGATTTCAAGCAGGTATTTGACTGTAGAGTCCTGCTCAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTTTGATTTCAAGCAGGTATTTGACTGTAGAGTCCTGCTCAGGCA  100

seq1  GTGTGTGGAGTAGCTGAGGAACTTTGGTGGGCCACAGATAGGAAGTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGAGTAGCTGAGGAACTTTGGTGGGCCACAGATAGGAAGTGGTT  150

seq1  GTCTCCTGGTATTACAACTGAATATCTAGACATCAGACATGCCCACGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGGTATTACAACTGAATATCTAGACATCAGACATGCCCACGTCT  200

seq1  GGTTGTAAGCTCCTCCCTCCCTCCTCTCCTGTGAAGGAAGGCCCTTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTAAGCTCCTCCCTCCCTCCTCTCCTGTGAAGGAAGGCCCTTGTTA  250

seq1  GGAGTAATCTGCTTGGAAGGCCAGAGGCCTGTACTGAGGTACAGTCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAATCTGCTTGGAAGGCCAGAGGCCTGTACTGAGGTACAGTCAGCC  300

seq1  CTTGTACCCTGGGAGCAAAGGGCTGGGTTAATCTCTAATAAATTTATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACCCTGGGAGCAAAGGGCTGGGTTAATCTCTAATAAATTTATACT  350

seq1  TATGTGGCACACTTGATGTAGGTCTCTACCCTTTTCATGCCTACTTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGCACACTTGATGTAGGTCTCTACCCTTTTCATGCCTACTTCATC  400

seq1  CCCTCAGATGAAGGAGGCACAGCTGAAACTTCAGAAAGTAAAAAGCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGATGAAGGAGGCACAGCTGAAACTTCAGAAAGTAAAAAGCATGC  450

seq1  TTTTAGCCATGGTGTGGAGAGCCTCAGTTCCTATGTCAGCCATTGCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCCATGGTGTGGAGAGCCTCAGTTCCTATGTCAGCCATTGCCTGT  500

seq1  GGCGTTGGTGCCCTTGTGGAATGTTTGACGAAGTATAGTGTATACCAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTGGTGCCCTTGTGGAATGTTTGACGAAGTATAGTGTATACCAATA  550

seq1  ATTACTAATCTTAGGGATTCTTATTGTGGAATTGGTGTCATATAGGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAATCTTAGGGATTCTTATTGTGGAATTGGTGTCATATAGGGAGA  600

seq1  AAATGTGGGGTTCTCCAGAATTGCTTACATATATATAATCTAAACACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGGGTTCTCCAGAATTGCTTACATATATATAATCTAAACACATG  650

seq1  GCACCCAGTAGGTTTTATTATTGTTGATGTTGTACATGGCACCCAGTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAGTAGGTTTTATTATTGTTGATGTTGTACATGGCACCCAGTAGG  700

seq1  TTTACTGTTGTTATCACTACTACTGCTATATTTGGGGGCATGTGTCATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTTGTTATCACTACTACTGCTATATTTGGGGGCATGTGTCATGG  750

seq1  CACATGTGTGGAGACCAGGAGGACATCTTAAGGGAATCGGCTGTCTCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGTGGAGACCAGGAGGACATCTTAAGGGAATCGGCTGTCTCCTT  800

seq1  TATCACATAGATCCCAGAGATGATTGGTTGGTGACATGTGCCTCTGCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACATAGATCCCAGAGATGATTGGTTGGTGACATGTGCCTCTGCTTG  850

seq1  CCGCGTCATCTCTTATCCAGTGTTCTCAGTCCTCTCTAGGTTCTGAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGTCATCTCTTATCCAGTGTTCTCAGTCCTCTCTAGGTTCTGAAGAA  900

seq1  CAGGCTCATTAAATCTTGAGGTGAGCGTAGAGCAGAGGTACGGGTGTGAT  950
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  CAGGCTCATTAAATCTTGA-GTGAGCGTAGAGCAGA-GTACGGGTGTGAT  948

seq1  CTGTGCCATCTGCATGAATATCTTCGTGTATAGCCTGTGACACTCCATTT  1000
      ||||||||||||||||||| ||||||||| ||||||||||  ||||||||
seq2  CTGTGCCATCTGCATGAAT-TCTTCGTGT-TAGCCTGTGAACCTCCATTT  996

seq1  GGGCACCCTATTAATGGAAAGGCAGTCCCAGCCTGTTAGAACTAGAAACT  1050
      ||||| ||||||||||||||||||||||  ||||||   ||||  |||||
seq2  GGGCA-CCTATTAATGGAAAGGCAGTCC--GCCTGT--AAACT--AAACT  1039

seq1  CATGCCTGTGATCCCAGCCAGCGGTGAGGGGCCTAGATGTTGTTACCCTG  1100
      |||| |||||   |||||||||| ||| ||||||| | ||||||| ||||
seq2  CATG-CTGTGGATCCAGCCAGCGTTGA-GGGCCTACAAGTTGTTA-CCTG  1086

seq1  TGCAGCTGGATTTCCCTGG  1119
      ||| |||||| ||||||||
seq2  TGC-GCTGGA-TTCCCTGG  1103

seq1: chr11_20012730_20013750
seq2: B6Ng01-169G19.g_65_1081 (reverse)

seq1  GCCCCCGAAGC-CCAGCCGCGCAGCCGAGGGGCCCGCGCGCACCCCGCAC  49
      ||||||||||| ||||| | ||||||||  || ||||| ||| ||| |||
seq2  GCCCCCGAAGCACCAGCAG-GCAGCCGA-AGGACCGCGGGCA-CCCACAC  47

seq1  ACACACGCGGCCGCCCCGCCGGGCCTTACCCCAGTGCCGTTGTCGCACAC  99
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGC-GCCGCCCCGCCGGGCCTTACCCCAGTGCCGTTGTCGCACAC  96

seq1  CACCACCTTCCTGCCCTGGCTGTCCATGGTTCGTCCTGGTGAGCCGCCGC  149
      ||||| ||||||||||| |||||||||||||||||||| |||||||||||
seq2  CACCAACTTCCTGCCCT-GCTGTCCATGGTTCGTCCTGATGAGCCGCCGC  145

seq1  CCGGCCTGGCCTGCTTCCTCCTCCACACGGCCCCGCCCTCGGCCCGCCGC  199
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCTGG-CTGCTTCCTCCTCCACACGGCCCCGCCCTCGGCCCGCCGC  194

seq1  TCCGCCCAAACC-GGAAGTCCCCGCCCGGCAGCCGTTCCAAGAGGGCGGT  248
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCGCCCAAACCGGGAAGTCCCCGCCCGGCAGCCGTTCCAAGAGGGCGGT  244

seq1  GCAGAGAGAGAAAAGAAGAGCGGGGACTGGCAGCCGAGAAGGCCAATGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGAGAAAAGAAGAGCGGGGACTGGCAGCCGAGAAGGCCAATGAG  294

seq1  AGCTGTCCGGCGCGGACCCGGGCGCGCCCTCTCGCCTCGTTCTGCTTCCG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCCGGCGCGGACCCGGGCGCGCCCTCTCGCCTCGTTCTGCTTCCG  344

seq1  GGGCTGCGCTTGGCTGGTGGGGCGGCGGCTCTGACCAAGTTGTCTCGGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCGCTTGGCTGGTGGGGCGGCGGCTCTGACCAAGTTGTCTCGGGA  394

seq1  CCTAGGGCGCGGCCGGGCCGGCTGTACAGGAGGCAGGCAGGTGAAGGCCG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGCGCGGCCGGGCCGGCTGTACAGGAGGCAGGCAGGTGAAGGCCG  444

seq1  GAGGGTGTGTGGCGGGACGGCAGTGGAGAAGGGTGGAGCAGCCGGCTAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGTGTGGCGGGACGGCAGTGGAGAAGGGTGGAGCAGCCGGCTAGG  494

seq1  AAGACCGAAAGCCACCTGGAGGTCCCGAGGCATGATGTGTCATTGCTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCGAAAGCCACCTGGAGGTCCCGAGGCATGATGTGTCATTGCTCCT  544

seq1  AGGCCTGGGTGGATACACCTACAAGTTTCAAACCTCCGGTTTATTCCACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGGGTGGATACACCTACAAGTTTCAAACCTCCGGTTTATTCCACA  594

seq1  CCTCCAGTTGCATGCAGCCCTAGGAGCCTGGCGGGATGCTTTCGTTTCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGTTGCATGCAGCCCTAGGAGCCTGGCGGGATGCTTTCGTTTCTT  644

seq1  TCTGCTTCACCACTTCCCTCTTTGATTTTCTCAAACAGGAACTCACCATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCACCACTTCCCTCTTTGATTTTCTCAAACAGGAACTCACCATG  694

seq1  TTGCCAAATGCAGACTTTAAAATTGAGGTCCTCTGTAACCTCCCTTGGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAATGCAGACTTTAAAATTGAGGTCCTCTGTAACCTCCCTTGGAA  744

seq1  ACAGGGACAAGTGTTACACGCACCTCTTTAAGAAATTGAATATGCACCCG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACAAGTGTTACACGCACCTCTTTAAGAAATTGAATATGCACCCG  794

seq1  GGCACTGTTGGCGTTCGCCTTTAATCCCAGCACTTGGGAGGCAGAAGCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGTTGGCGTTCGCCTTTAATCCCAGCACTTGGGAGGCAGAAGCAG  844

seq1  ACGGATTTCTAAGTTGGAGGCCAGCCTGGTCTACATAGCAAGTTTCAGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATTTCTAAGTTGGAGGCCAGCCTGGTCTACATAGCAAGTTTCAGGT  894

seq1  CAGCCAGAGCTATAAAGTGAAACCCTGTCAAAAAAGAAAGATAATGCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGAGCTATAAAGTGAAACCCTGTCAAAAAAGAAAGATAATGCTTT  944

seq1  CACTTAGCGCATAGTGGTGAACTTGCTTTCAATCCCAGCACACAAGTAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGCGCATAGTGGTGAACTTGCTTTCAATCCCAGCACACAAGTAGA  994

seq1  GGCAGTTGGATTTCTGTGAATTC  1021
      |||||||||||||||||||||||
seq2  GGCAGTTGGATTTCTGTGAATTC  1017