BAC Information

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BAC

Clone NameB6Ng01-170A11
Chromosome11 (Build37)
Map Location 62,761,523 - 62,908,871
singlet/doubletdoublet
Overlap geneCdrt4, Tekt3
Upstream geneD630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b
Downstream genePmp22, LOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170A11.bB6Ng01-170A11.g
ACCDH960846DH960847
length1,064567
definitionDH960846|Mus musculus domesticus DNA, BAC clone: B6Ng01-170A11, 5' end.DH960847|Mus musculus domesticus DNA, BAC clone: B6Ng01-170A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,907,797 - 62,908,871)(62,761,523 - 62,762,089)
sequence
gaattcatgggcaagaaggaaaagatatgcggaggaggttagcatcctgc
catcagtttcaaaggctaaggttctcccctgtgcttctcgtgctccaagg
cgctctacctcgatccacataccaaatgtcccaccatgtcccactgggtg
gtgaagactttcacacacaggtctttagagaacattcagtgttgcttaca
gcattatgactcaggatctggtcactgccaggataaaatggtcttcattt
tcagctcatccatattacttatggaggggtgagaatccttcgactcccat
atttactttcttgggtggatcgactacatttccttatttctattccagaa
cccagaaagcagagaattaaggtttaggcacaaatgagaggccatccaga
acaaggtcatggtgtttctgtgaacacaactctttaatagtgactatatt
aacactcatttagatgctgagatactgttttccttctaccactttttagg
agtttgaaaactactcttcccagggtccctagcagtagcccaccagccgg
agggtgctggggtagctattgcgcatgctcatgcatttttcctggtcgat
gtacagagtgttggctttcacagccaagtcatgctccagggtggctttgg
tatgggccaaggactgcaaggtgtcctccgaatccctcaggcgctgctgc
agagtctggatggtctcgtctaccctcatagacctcgttaacaaggctgc
aggagggagcacatggttaggtggacgggcacactcaggcagtctgtccc
tcagctgattttaagggacatgtcagaagtactttttatatcaagggatg
catatatctatgctgctttccgaattaccagaatcatcccctattgtcaa
cctcattatagtctataacccaaaagatatccccggtacctgagatacac
taaaattccactcccttataccacctacactccacacatccatatactga
cttcttatcatatgacacactggatgtatgagcttctacaatatggtgaa
aagaaaggttataa
gtgctgggctgggagtgaaaagaaggctgagatagctgaggaaggcttag
aagagcctggctattgagctaaagcatattaaaataagttaattcgtgtg
tgtgttttatccatggatctgagggaagctgggcaggactggtagcatgg
tccacccagagcttaaagcagggtagccaaaactacacactacattgtag
ggataatgtactgtgtgtgaagacacatctctatctttctttgcctgcct
aaggcaccctctgattggataaaataaaaagctgatggcctatagcaaag
gcagaagtagaaggtgggaattctgggaagagatagaaattctgggaaag
agtcaagggcacgagactcaccacctggactccaaggaagtcggatgtat
gaaactgagagaggtaaccagccatgtggccgaacgtagatagtataaat
gggttaaaataagttacaagctagttgggaacaagcctaacttaaggact
aagcattcgtttattaataaataaccctctgtgtttattattcaggagtt
gggggtggggtggggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_62907797_62908871
seq2: B6Ng01-170A11.b_43_1106 (reverse)

seq1  TTATAACTTTTTCTTTTACAATATTGTGAGTAGCATCATACATTCATGTG  50
      ||||||| |||  ||| || ||||||| || ||| |||||||| || |||
seq2  TTATAACCTTTCTTTTCACCATATTGT-AGAAGC-TCATACATCCA-GTG  47

seq1  TGTCCATATGAATAAGTATGTCAGTATATGGATGTGTGTGAGTGTGTGGT  100
      ||| |||||| ||||| | ||||||||||||||||||| ||||||  |||
seq2  TGT-CATATG-ATAAG-AAGTCAGTATATGGATGTGTG-GAGTGT-AGGT  92

seq1  GTGTATAAGTGAGTGGAATTTTAGTGTTATCTCAGGTATATGTTTAGATT  150
      | ||||||| |||||||||||||||| |||||||||||   |    |  |
seq2  G-GTATAAGGGAGTGGAATTTTAGTG-TATCTCAGGTACCGG----GGAT  136

seq1  ATCTTTTGGGTTATAGACTATAATGAGGTTGACAATAGGGGATGATTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGGGTTATAGACTATAATGAGGTTGACAATAGGGGATGATTCTG  186

seq1  GTAATTCTGGAAGCATGCATAGATATATGCATCCCTTGATATAAAAAGTA  250
      ||||||| | ||||| ||||||||||||||||||||||||||||||||||
seq2  GTAATTCGGAAAGCA-GCATAGATATATGCATCCCTTGATATAAAAAGTA  235

seq1  CTTCTGACATGTCCCTT-AAATCAGCTG-GGGACAGACTGCCTGAGTGTG  298
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  CTTCTGACATGTCCCTTAAAATCAGCTGAGGGACAGACTGCCTGAGTGTG  285

seq1  CCCGTCCACCTAACCATGTGCTCCCTCCTGCAGCCTTGTTAACGAGGTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCCACCTAACCATGTGCTCCCTCCTGCAGCCTTGTTAACGAGGTCT  335

seq1  ATGA-GGTAGACGAGACCATCCAGACTCTGCAGCAGCGCCTGAGGGATTC  397
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGTAGACGAGACCATCCAGACTCTGCAGCAGCGCCTGAGGGATTC  385

seq1  GGAGGACACCTTGCAGTCCTTGGCCCATACCAAAGCCACCCTGGAGCATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACACCTTGCAGTCCTTGGCCCATACCAAAGCCACCCTGGAGCATG  435

seq1  ACTTGGCTGTGAAAGCCAACACTCTGTACATCGACCAGGAAAAATGCATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCTGTGAAAGCCAACACTCTGTACATCGACCAGGAAAAATGCATG  485

seq1  AGCATGCGCAATAGCTACCCCAGCACCCTCCGGCTGGTGGGCTACTGCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCGCAATAGCTACCCCAGCACCCTCCGGCTGGTGGGCTACTGCTA  535

seq1  GGGACCCTGGGAAGAGTAGTTTTCAAACTCCTAAAAAGTGGTAGAAGGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCTGGGAAGAGTAGTTTTCAAACTCCTAAAAAGTGGTAGAAGGAA  585

seq1  AACAGTATCTCAGCATCTAAATGAGTGTTAATATAGTCACTATTAAAGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATCTCAGCATCTAAATGAGTGTTAATATAGTCACTATTAAAGAG  635

seq1  TTGTGTTCACAGAAACACCATGACCTTGTTCTGGATGGCCTCTCATTTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCACAGAAACACCATGACCTTGTTCTGGATGGCCTCTCATTTGT  685

seq1  GCCTAAACCTTAATTCTCTGCTTTCTGGGTTCTGGAATAGAAATAAGGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAACCTTAATTCTCTGCTTTCTGGGTTCTGGAATAGAAATAAGGAA  735

seq1  ATGTAGTCGATCCACCCAAGAAAGTAAATATGGGAGTCGAAGGATTCTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTCGATCCACCCAAGAAAGTAAATATGGGAGTCGAAGGATTCTCA  785

seq1  CCCCTCCATAAGTAATATGGATGAGCTGAAAATGAAGACCATTTTATCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCATAAGTAATATGGATGAGCTGAAAATGAAGACCATTTTATCCT  835

seq1  GGCAGTGACCAGATCCTGAGTCATAATGCTGTAAGCAACACTGAATGTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGACCAGATCCTGAGTCATAATGCTGTAAGCAACACTGAATGTTC  885

seq1  TCTAAAGACCTGTGTGTGAAAGTCTTCACCACCCAGTGGGACATGGTGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGACCTGTGTGTGAAAGTCTTCACCACCCAGTGGGACATGGTGGG  935

seq1  ACATTTGGTATGTGGATCGAGGTAGAGCGCCTTGGAGCACGAGAAGCACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGTATGTGGATCGAGGTAGAGCGCCTTGGAGCACGAGAAGCACA  985

seq1  GGGGAGAACCTTAGCCTTTGAAACTGATGGCAGGATGCTAACCTCCTCC-  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGGAGAACCTTAGCCTTTGAAACTGATGGCAGGATGCTAACCTCCTCCG  1035

seq1  CATATCTTTTCCTTCTTGCCCATGAATTC  1075
      |||||||||||||||||||||||||||||
seq2  CATATCTTTTCCTTCTTGCCCATGAATTC  1064

seq1: chr11_62761523_62762089
seq2: B6Ng01-170A11.g_76_642

seq1  GTGCTGGGCTGGGAGTGAAAAGAAGGCTGAGATAGCTGAGGAAGGCTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGCTGGGAGTGAAAAGAAGGCTGAGATAGCTGAGGAAGGCTTAG  50

seq1  AAGAGCCTGGCTATTGAGCTAAAGCATATTAAAATAAGTTAATTCGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCTGGCTATTGAGCTAAAGCATATTAAAATAAGTTAATTCGTGTG  100

seq1  TGTGTTTTATCCATGGATCTGAGGGAAGCTGGGCAGGACTGGTAGCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTATCCATGGATCTGAGGGAAGCTGGGCAGGACTGGTAGCATGG  150

seq1  TCCACCCAGAGCTTAAAGCAGGGTAGCCAAAACTACACACTACATTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCAGAGCTTAAAGCAGGGTAGCCAAAACTACACACTACATTGTAG  200

seq1  GGATAATGTACTGTGTGTGAAGACACATCTCTATCTTTCTTTGCCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATGTACTGTGTGTGAAGACACATCTCTATCTTTCTTTGCCTGCCT  250

seq1  AAGGCACCCTCTGATTGGATAAAATAAAAAGCTGATGGCCTATAGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACCCTCTGATTGGATAAAATAAAAAGCTGATGGCCTATAGCAAAG  300

seq1  GCAGAAGTAGAAGGTGGGAATTCTGGGAAGAGATAGAAATTCTGGGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGTAGAAGGTGGGAATTCTGGGAAGAGATAGAAATTCTGGGAAAG  350

seq1  AGTCAAGGGCACGAGACTCACCACCTGGACTCCAAGGAAGTCGGATGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGGCACGAGACTCACCACCTGGACTCCAAGGAAGTCGGATGTAT  400

seq1  GAAACTGAGAGAGGTAACCAGCCATGTGGCCGAACGTAGATAGTATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAGAGAGGTAACCAGCCATGTGGCCGAACGTAGATAGTATAAAT  450

seq1  GGGTTAAAATAAGTTACAAGCTAGTTGGGAACAAGCCTAACTTAAGGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAAAATAAGTTACAAGCTAGTTGGGAACAAGCCTAACTTAAGGACT  500

seq1  AAGCATTCGTTTATTAATAAATAACCCTCTGTGTTTATTATTCAGGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCGTTTATTAATAAATAACCCTCTGTGTTTATTATTCAGGAGTT  550

seq1  GGGGGTGGGGTGGGGCT  567
      |||||||||||||||||
seq2  GGGGGTGGGGTGGGGCT  567