BAC Information

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BAC

Clone NameB6Ng01-170M11
Chromosome11 (Build37)
Map Location 67,973,255 - 68,076,127
singlet/doubletdoublet
Overlap geneStx8, Ntn1
Upstream geneMyh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16
Downstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170M11.bB6Ng01-170M11.g
ACCDH961405DH961406
length922959
definitionDH961405|Mus musculus domesticus DNA, BAC clone: B6Ng01-170M11, 5' end.DH961406|Mus musculus domesticus DNA, BAC clone: B6Ng01-170M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,075,205 - 68,076,127)(67,973,255 - 67,974,212)
sequence
gaattccatcggcatccaaggaggatggtcatgggggtgaattcgattgc
agggggttggggggtgggggcttgcagagcaggccaggagaggtcagctg
gcacaagaacctggcgtccctatatatgcctatgcccacatctgtggctc
acgactgtgcgatcccatgctgtggcctctattcatacatgaccaactga
gaggcacgcccatatcacttctactgcaggaaaaagtcaaaggtcctttg
cagccagctcttcctcactgtcaccctttccacaggtcatcaagactaga
tctcatttttaaaaggggtacagacttggatttagggtataccgatgaag
acaatgattcagcagagacattttcccatctacaatggcattagctactt
ttccccgtgctagtgacaaggtagcccaagggaagatggcgtttgtctca
cactcttagagggtcttcctccacgatggcagaggtgacctcgcgctatg
caggatgcccttgagcttgagacggcttgtttgtgtggaatgagccagga
agcagagaaaaccggaaccgggggcagatatagccatataagacccaccc
ctagtgacctactttccaccatctacagtcttcacaatcacaccacaagc
catgtaacaaatgctccaaaacatggaagatctataagggatatttcagc
ctcaaaatgtaagaaggggtaagatgggaacagccccagtgcttctcaga
gacactatgtcataggagccagcaagctgtcagccctccaggcccctctg
tcctccggcccagacccttcctcatcctggtgtttccccatgtttctgca
tgtcggacaccactgggacgaacatgtgttcacattgctctcctttctga
gcgcggagacaggctggctcta
gaattccctgtttggaaagttaaatgaaaatcagccgagcgggcgtgctt
gctagtcttaaagaaggtgctccattgtagatcagccgggtctggcagtg
aatgtgtgcactatcagagtccggggacttagggggatggatttcccagg
gtttaatcatttcataaggcctctgagtgtgactttttccccaataatct
acttatctcagtaatttacccctcctactgcattgcgaggaaaatgagtc
tcccaggttgtttgcatgataagtagctggggattgtatgagcctccaag
aagccctgagtccattgtagcagtctgagctaatggtctcccatgggagc
tggcaggttaagtgcaggagggggctggagaacaccctttatcacaagta
ccacacatttgaaaagctgaaatctgaaagatgcttgctccgtgcaggat
attttccctgccacagaaagggtgagaaaagcgaccttcttgatgggcct
ttcagtccagtacatagctgggggtgttgtggaaatgttcaggaggcttt
tgtttgtgtgtttccagtgcatcgagctactgtgctacttttctccccag
ttaactcagaacttaaagaattaactgcttgtttcagacagctgcaagaa
tcacttctggggaaaaattacataggtcataatttttttctctgcttcgt
tctttctaattccttttacacatgcccttggagattttcatctgacagtg
tatcagccaacagagttgttgttctttaagatttatttttatttttagct
gcatgtgtgtgtatgttgtgtccatttgagtatgtgcacgtggatgcagt
tatccaaggaagccagaagagggcatcagattctctgaagctggagttat
aggtgctgtaagccccctgacatacatggtggcaacctgtacgtgggtcc
cttgcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68075205_68076127
seq2: B6Ng01-170M11.b_44_965 (reverse)

seq1  TAGAGCCAGCCTGTCTACGGCGCTCAGAAAGGAGAGCAATGTGAACACAT  50
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  TAGAGCCAGCCTGTCT-CCGCGCTCAGAAAGGAGAGCAATGTGAACACAT  49

seq1  GTTCGTCCCAGTGGTGTCAGAACATGCAGAAACATGGGGAAACACCAGGA  100
      |||||||||||||||||| | |||||||||||||||||||||||||||||
seq2  GTTCGTCCCAGTGGTGTCCG-ACATGCAGAAACATGGGGAAACACCAGGA  98

seq1  TGAGGAAGGGTCTGGGCCGGAGGACAGAGGGGCCTGGAGGGCTGGCAGCT  150
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGAGGAAGGGTCTGGGCCGGAGGACAGAGGGGCCTGGAGGGCTGACAGCT  148

seq1  TGCTGGCTCCTATGACATAGTGTCTCTGAGAAGCACTGGGGCTGTTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTCCTATGACATAGTGTCTCTGAGAAGCACTGGGGCTGTTCCCA  198

seq1  TCTTACCCCTTCTTACATTTTGAGGCTGAAATATCCCTTATAGATCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCCCTTCTTACATTTTGAGGCTGAAATATCCCTTATAGATCTTCC  248

seq1  ATGTTTTGGAGCATTTGTTACATGGCTTGTGGTGTGATTGTGAAGACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGGAGCATTTGTTACATGGCTTGTGGTGTGATTGTGAAGACTGT  298

seq1  AGATGGTGGAAAGTAGGTCACTAGGGGTGGGTCTTATATGGCTATATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTGGAAAGTAGGTCACTAGGGGTGGGTCTTATATGGCTATATCTG  348

seq1  CCCCCGGTTCCGGTTTTCTCTGCTTCCTGGCTCATTCCACACAAACAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGGTTCCGGTTTTCTCTGCTTCCTGGCTCATTCCACACAAACAAGC  398

seq1  CGTCTCAAGCTCAAGGGCATCCTGCATAGCGCGAGGTCACCTCTGCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCAAGCTCAAGGGCATCCTGCATAGCGCGAGGTCACCTCTGCCATC  448

seq1  GTGGAGGAAGACCCTCTAAGAGTGTGAGACAAACGCCATCTTCCCTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGAAGACCCTCTAAGAGTGTGAGACAAACGCCATCTTCCCTTGGG  498

seq1  CTACCTTGTCACTAGCACGGGGAAAAGTAGCTAATGCCATTGTAGATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTGTCACTAGCACGGGGAAAAGTAGCTAATGCCATTGTAGATGGG  548

seq1  AAAATGTCTCTGCTGAATCATTGTCTTCATCGGTATACCCTAAATCCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCTCTGCTGAATCATTGTCTTCATCGGTATACCCTAAATCCAAG  598

seq1  TCTGTACCCCTTTTAAAAATGAGATCTAGTCTTGATGACCTGTGGAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACCCCTTTTAAAAATGAGATCTAGTCTTGATGACCTGTGGAAAGG  648

seq1  GTGACAGTGAGGAAGAGCTGGCTGCAAAGGACCTTTGACTTTTTCCTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTGAGGAAGAGCTGGCTGCAAAGGACCTTTGACTTTTTCCTGCA  698

seq1  GTAGAAGTGATATGGGCGTGCCTCTCAGTTGGTCATGTATGAATAGAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGTGATATGGGCGTGCCTCTCAGTTGGTCATGTATGAATAGAGGC  748

seq1  CACAGCATGGGATCGCACAGTCGTGAGCCACAGATGTGGGCATAGGCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATGGGATCGCACAGTCGTGAGCCACAGATGTGGGCATAGGCATA  798

seq1  TATAGGGACGCCAGGTTCTTGTGCCAGCTGACCTCTCCTGGCCTGCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGACGCCAGGTTCTTGTGCCAGCTGACCTCTCCTGGCCTGCTCTG  848

seq1  CAAGCCCCCACCCCCCAACCCCCTGCAATCGAATTCA-CACCATGACCAT  899
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  CAAGCCCCCACCCCCCAACCCCCTGCAATCGAATTCACCCCCATGACCAT  898

seq1  CCTCCTTGGATGCCGATGGAATTC  923
      ||||||||||||||||||||||||
seq2  CCTCCTTGGATGCCGATGGAATTC  922

seq1: chr11_67973255_67974212
seq2: B6Ng01-170M11.g_71_1029

seq1  GAATTCCCTGTTTGGAAAGTTAAATGAAAATCAGCCGAGCGGGCGTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTTTGGAAAGTTAAATGAAAATCAGCCGAGCGGGCGTGCTT  50

seq1  GCTAGTCTTAAAGAAGGTGCTCCATTGTAGATCAGCCGGGTCTGGCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCTTAAAGAAGGTGCTCCATTGTAGATCAGCCGGGTCTGGCAGTG  100

seq1  AATGTGTGCACTATCAGAGTCCGGGGACTTAGGGGGATGGATTTCCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGCACTATCAGAGTCCGGGGACTTAGGGGGATGGATTTCCCAGG  150

seq1  GTTTAATCATTTCATAAGGCCTCTGAGTGTGACTTTTTCCCCAATAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATCATTTCATAAGGCCTCTGAGTGTGACTTTTTCCCCAATAATCT  200

seq1  ACTTATCTCAGTAATTTACCCCTCCTACTGCATTGCGAGGAAAATGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCTCAGTAATTTACCCCTCCTACTGCATTGCGAGGAAAATGAGTC  250

seq1  TCCCAGGTTGTTTGCATGATAAGTAGCTGGGGATTGTATGAGCCTCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTTGTTTGCATGATAAGTAGCTGGGGATTGTATGAGCCTCCAAG  300

seq1  AAGCCCTGAGTCCATTGTAGCAGTCTGAGCTAATGGTCTCCCATGGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTGAGTCCATTGTAGCAGTCTGAGCTAATGGTCTCCCATGGGAGC  350

seq1  TGGCAGGTTAAGTGCAGGAGGGGGCTGGAGAACACCCTTTATCACAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTTAAGTGCAGGAGGGGGCTGGAGAACACCCTTTATCACAAGTA  400

seq1  CCACACATTTGAAAAGCTGAAATCTGAAAGATGCTTGCTCCGTGCAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATTTGAAAAGCTGAAATCTGAAAGATGCTTGCTCCGTGCAGGAT  450

seq1  ATTTTCCCTGCCACAGAAAGGGTGAGAAAAGCGACCTTCTTGATGGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCTGCCACAGAAAGGGTGAGAAAAGCGACCTTCTTGATGGGCCT  500

seq1  TTCAGTCCAGTACATAGCTGGGGGTGTTGTGGAAATGTTCAGGAGGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCAGTACATAGCTGGGGGTGTTGTGGAAATGTTCAGGAGGCTTT  550

seq1  TGTTTGTGTGTTTCCAGTGCATCGAGCTACTGTGCTACTTTTCTCCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGTGTTTCCAGTGCATCGAGCTACTGTGCTACTTTTCTCCCCAG  600

seq1  TTAACTCAGAACTTAAAGAATTAACTGCTTGTTTCAGACAGCTGCAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCAGAACTTAAAGAATTAACTGCTTGTTTCAGACAGCTGCAAGAA  650

seq1  TCACTTCTGGGGAAAAATTACATAGGTCATAATTTTTTTCTCTGCTTCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTGGGGAAAAATTACATAGGTCATAATTTTTTTCTCTGCTTCGT  700

seq1  TCTTTCTAATTCCTTTTACACATGCCCTTGGAGATTTTCATCTGACAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAATTCCTTTTACACATGCCCTTGGAGATTTTCATCTGACAGTG  750

seq1  TATCAGCCAACAGAGTTGTTGTTCTTTAAGATTTATTTTTATTTTTAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCCAACAGAGTTGTTGTTCTTTAAGATTTATTTTTATTTTTAGCT  800

seq1  GCATGTGTGTGTATGTTGTGTCCATTTGAGTATGTGCACGTGGATGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTGTGTATGTTGTGTCCATTTGAGTATGTGCACGTGGATGCAGT  850

seq1  TATCCAAGGAAGCCAGAAGAGGGCATCAGATCCCCTGAAGCTGGAGTTAT  900
      ||||||||||||||||||||||||||||||| | ||||||||||||||||
seq2  TATCCAAGGAAGCCAGAAGAGGGCATCAGATTCTCTGAAGCTGGAGTTAT  900

seq1  AGGTGCTGTAAGCCCCCTGACATCAATGGTGGCAA-CTGTACGTGGGTCC  949
      |||||||||||||||||||||||  |||||||||| ||||||||||||||
seq2  AGGTGCTGTAAGCCCCCTGACATACATGGTGGCAACCTGTACGTGGGTCC  950

seq1  TCTGCAAAA  958
        |||||||
seq2  CTTGCAAAA  959