BAC Information

Click to search

BAC

Clone NameB6Ng01-171G20
Chromosome11 (Build37)
Map Location 112,259,490 - 112,431,313
singlet/doubletdoublet
Overlap geneEG667038
Upstream geneLOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020, EG668396
Downstream geneLOC100041610, LOC671963, LOC667047, BC006965, Sox9, 2610035D17Rik, Slc39a11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171G20.bB6Ng01-171G20.g
ACCGA000316GA000317
length8341,018
definitionB6Ng01-171G20.b B6Ng01-171G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,430,484 - 112,431,313)(112,259,490 - 112,260,491)
sequence
gaattcttcctggtttattggtggtgaaatagagtctcaagactttatgt
ggctcacctaaggtcacagcacagcgtctgggagtcaatgtgtttgactt
agaacaacacctctctgttggaccgtggggcctctttggcaggggacagt
aataaagttctgagacaaagagtgggaggacttgtgaaaaggtattcctg
tgacatcaagactccaggaaatgccatccccaccccattcagtgctcact
gaatgagctacgtgaaacttcgtgaaactgctgacaccatacttaggaac
ctgaagtttgctgctggcgtcccaagtgggaacattcatccctcccagca
gatgttctattttcctggtgttgatgggtggtgggaggcatgaatatggt
tctctctctcattccccggacatggtgttttcttcaacatggggtgaaca
ctaattcagacaccaaagtggccaatctatctttgcctgaggaacaggtc
tgatcttgtctccgaatcctgaaggatgcagggagaagacaggccatttg
tgttgactatgtagcaacagataaggtatgtttggaagcatagagcaggg
gctgtggagatggctcagtcaggaaagcagttgtcttgcaagcatcataa
tctggttttgctcctcagaactggatatttatttttttaaaggctgagaa
aaaacaccagtggagtcctgtatgcataaatgtacatgggtaccagcccc
aacacacatgtacacctagatatacatgaatacatgagagacacaaaact
ctctctctcctctcccccccccccctctctctct
gaattcctggaaaatccacaaaacttctaatatcgatatatccatatatg
caaatagattcggcagcgttgcaaaactcggagtcaacacacaagtcaga
tatatttctctaaactaaaagtgaacatgacaaagattttttgatgccag
gggctgaaaggaaatgatttgaggaacgttttagaccgattcatttttat
tgtatgtgtatgactgactgtgtgcatgactgtgcaccatgtgaatgcag
tgtccatcacgaccacgggaggacgtcggatcatttggaacgagttaggg
atggcgatgaaccaactgggtcctttgtaagaacaactggtactcctatc
tgctgagccatctctctactccagtgaactcgatctacatcatgatgatg
gtggtgggtgtaagggtgcacatttaataaccatatgaaccatgcatttt
taatagtcttgcgtataaatactacaaaaggatgagcaaagaggtttgaa
aataaaacacatatttaagaaatcacatagccctccgaatgtgcagagga
aaatagtaaccgatgggcttgtgagtgactgacgctcgttacatttttct
tttgactctgcatagtttatagggtgtatcccttactttacaatcataaa
aatgcttatttcaaaagtatatacaggatctttctttcaatttatttcca
tataagagtttagtactataaagtgtcatgattcatcctgtggatggtac
caaccagcctttgaccgtggcagatgaagaaaggcactgcaatatattga
gctgacatcaaatattaatacccatttcacattcaatcccataaaggatc
agtgtctcagatcctattttttatatgggtacaatcagaaaagagtccag
aaatcccaagtcataacttaaaaagtccaaaacccatgtctaataaaatt
gtctaaatggtggtttacttagaaatctggaggaaagctctgactatttg
aaagcccgcatggaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_112430484_112431313
seq2: B6Ng01-171G20.b_32_865 (reverse)

seq1  AGAGAGAGA-GGGGGGGGGGGAGAGGAGAGAGAGAG-TTTGTGTCTCTCA  48
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  AGAGAGAGAGGGGGGGGGGGGAGAGGAGAGAGAGAGTTTTGTGTCTCTCA  50

seq1  TGTATTCATGTATATCTAGGTGTACATGTGTGTTGGGGCTGGTACCCATG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCATGTATATCTAGGTGTACATGTGTGTTGGGGCTGGTACCCATG  100

seq1  TACATTTATGCATACAGGACTCCACTGGTG-TTTTTCTCAGCCTTTAAAA  147
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TACATTTATGCATACAGGACTCCACTGGTGTTTTTTCTCAGCCTTTAAAA  150

seq1  AAAT-AATATCCAGTTCTGAGGAGCAAAACCAGATTATGATGCTTGCAAG  196
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATATCCAGTTCTGAGGAGCAAAACCAGATTATGATGCTTGCAAG  200

seq1  ACAACTGCTTTCCTGACTGAGCCATCTCCACAGCCCCTGCTCTATGCTTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGCTTTCCTGACTGAGCCATCTCCACAGCCCCTGCTCTATGCTTC  250

seq1  CAAACATACCTTATCTGTTGCTACATAGTCAACACAAATGGCCTGTCTTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATACCTTATCTGTTGCTACATAGTCAACACAAATGGCCTGTCTTC  300

seq1  TCCCTGCATCCTTCAGGATTCGGAGACAAGATCAGACCTGTTCCTCAGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCATCCTTCAGGATTCGGAGACAAGATCAGACCTGTTCCTCAGGC  350

seq1  AAAGATAGATTGGCCACTTTGGTGTCTGAATTAGTGTTCACCCCATGTTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAGATTGGCCACTTTGGTGTCTGAATTAGTGTTCACCCCATGTTG  400

seq1  AAGAAAACACCATGTCCGGGGAATGAGAGAGAGAACCATATTCATGCCTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACACCATGTCCGGGGAATGAGAGAGAGAACCATATTCATGCCTC  450

seq1  CCACCACCCATCAACACCAGGAAAATAGAACATCTGCTGGGAGGGATGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCCATCAACACCAGGAAAATAGAACATCTGCTGGGAGGGATGAA  500

seq1  TGTTCCCACTTGGGACGCCAGCAGCAAACTTCAGGTTCCTAAGTATGGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCACTTGGGACGCCAGCAGCAAACTTCAGGTTCCTAAGTATGGTG  550

seq1  TCAGCAGTTTCACGAAGTTTCACGTAGCTCATTCAGTGAGCACTGAATGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGTTTCACGAAGTTTCACGTAGCTCATTCAGTGAGCACTGAATGG  600

seq1  GGTGGGGATGGCATTTCCTGGAGTCTTGATGTCACAGGAATACCTTTTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGATGGCATTTCCTGGAGTCTTGATGTCACAGGAATACCTTTTCA  650

seq1  CAAGTCCTCCCACTCTTTGTCTCAGAACTTTATTACTGTCCCCTGCCAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCTCCCACTCTTTGTCTCAGAACTTTATTACTGTCCCCTGCCAAA  700

seq1  GAGGCCCCACGGTCCAACAGAGAGGTGTTGTTCTAAGTCAAACACATTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCCACGGTCCAACAGAGAGGTGTTGTTCTAAGTCAAACACATTGA  750

seq1  CTCCCAGACGCTGTGCTGTGACCTTAGGTGAGCCACATAAAGTCTTGAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGACGCTGTGCTGTGACCTTAGGTGAGCCACATAAAGTCTTGAGA  800

seq1  CTCTATTTCACCACCAATAAACCAGGAAGAATTC  830
      ||||||||||||||||||||||||||||||||||
seq2  CTCTATTTCACCACCAATAAACCAGGAAGAATTC  834

seq1: chr11_112259490_112260491
seq2: B6Ng01-171G20.g_70_1087

seq1  GAATTCCTGGAAAATCCACAAAACTTCTAATATCGATATATCCATATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAAAATCCACAAAACTTCTAATATCGATATATCCATATATG  50

seq1  CAAATAGATTCGGCAGCGTTGCAAAACTCGGAGTCAACACACAAGTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGATTCGGCAGCGTTGCAAAACTCGGAGTCAACACACAAGTCAGA  100

seq1  TATATTTCTCTAAACTAAAAGTGAACATGACAAAGATTTTTTGATGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCTCTAAACTAAAAGTGAACATGACAAAGATTTTTTGATGCCAG  150

seq1  GGGCTGAAAGGAAATGATTTGAGGAACGTTTTAGACCGATTCATTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAAAGGAAATGATTTGAGGAACGTTTTAGACCGATTCATTTTTAT  200

seq1  TGTATGTGTATGACTGACTGTGTGCATGACTGTGCACCATGTGAATGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTATGACTGACTGTGTGCATGACTGTGCACCATGTGAATGCAG  250

seq1  TGTCCATCACGACCACGGGAGGACGTCGGATCATTTGGAACGAGTTAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCACGACCACGGGAGGACGTCGGATCATTTGGAACGAGTTAGGG  300

seq1  ATGGCGATGAACCAACTGGGTCCTTTGTAAGAACAACTGGTACTCCTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGATGAACCAACTGGGTCCTTTGTAAGAACAACTGGTACTCCTATC  350

seq1  TGCTGAGCCATCTCTCTACTCCAGTGAACTCGATCTACATCATGATGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCCATCTCTCTACTCCAGTGAACTCGATCTACATCATGATGATG  400

seq1  GTGGTGGGTGTAAGGGTGCACATTTAATAACCATATGAACCATGCATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGGTGTAAGGGTGCACATTTAATAACCATATGAACCATGCATTTT  450

seq1  TAATAGTCTTGCGTATAAATACTACAAAAGGATGAGCAAAGAGGTTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTCTTGCGTATAAATACTACAAAAGGATGAGCAAAGAGGTTTGAA  500

seq1  AATAAAACACATATTTAAGAAATCACATAGCCCTCCGAATGTGCAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACACATATTTAAGAAATCACATAGCCCTCCGAATGTGCAGAGGA  550

seq1  AAATAGTAACCGATGGGCTTGTGAGTGACTGACGCTCGTTACATTTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTAACCGATGGGCTTGTGAGTGACTGACGCTCGTTACATTTTTCT  600

seq1  TTTGACTCTGCATAGTTTATAGGGTGTATCCCTTACTTTACAATCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCTGCATAGTTTATAGGGTGTATCCCTTACTTTACAATCATAAA  650

seq1  AATGC-TATTTCAAAAGTATATACAGGATC-TTCTTTCAATTTATTTCCA  698
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  AATGCTTATTTCAAAAGTATATACAGGATCTTTCTTTCAATTTATTTCCA  700

seq1  TATAAGAG-TTAGTACTATAAAGTGTCATGATTCATCCTGTGGATGGTAC  747
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGTTTAGTACTATAAAGTGTCATGATTCATCCTGTGGATGGTAC  750

seq1  CAACCAGCCTTTGACCGTGGCAGATGAAGAAAGGCACTGCAATATATTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGCCTTTGACCGTGGCAGATGAAGAAAGGCACTGCAATATATTGA  800

seq1  GCTGACATCAAATATTAATACCCATTTCACATTCAATCCCATAAA-GATC  846
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTGACATCAAATATTAATACCCATTTCACATTCAATCCCATAAAGGATC  850

seq1  AGTGTCTCAGAATCCTA-TTTTTATATGGGTACAATCAG-AAAGAGTCCA  894
      |||||||||| |||||| ||||||||||||||||||||| ||||||||||
seq2  AGTGTCTCAG-ATCCTATTTTTTATATGGGTACAATCAGAAAAGAGTCCA  899

seq1  GAAA-CCCAAGTCATAAC-TAAAAAGT-CAAAAACCATGTCTAATAAAAT  941
      |||| ||||||||||||| |||||||| ||||| ||||||||||||||||
seq2  GAAATCCCAAGTCATAACTTAAAAAGTCCAAAACCCATGTCTAATAAAAT  949

seq1  TGTCT-AATG--TGTTTACCTAGAAATCTGGAGG-AGGCTCTGACTA-TT  986
      ||||| ||||   |||||| |||||||||||||| | |||||||||| ||
seq2  TGTCTAAATGGTGGTTTACTTAGAAATCTGGAGGAAAGCTCTGACTATTT  999

seq1  GAA--GCCGCAT-GAAACA  1002
      |||   |||||| ||||||
seq2  GAAAGCCCGCATGGAAACA  1018