BAC Information

Click to search

BAC

Clone NameB6Ng01-172J14
Chromosome11 (Build37)
Map Location 106,177,221 - 106,287,371
singlet/doubletdoublet
Overlap geneScn4a, 2310007L24Rik, Icam2, Ern1
Upstream geneMrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b
Downstream geneLOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172J14.bB6Ng01-172J14.g
ACCGA001171GA001172
length998741
definitionB6Ng01-172J14.b B6Ng01-172J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,286,385 - 106,287,371)(106,177,221 - 106,177,954)
sequence
gaattcaggagggctccacacacagatcttctccagtcttcatgctgaga
tgactcgtctgggattctggctcagctccttgtaaacttgccccattaca
tatgtgaatagcctgtactttctgacatggctccttcttgggcaaaaatg
gatattagaatgcctcacacagctttcttctgcttcagtcatttgatcga
tacaggtccagagccaagggtgaagacaaagacaaagcctcttgatagga
aaaaaaaggcttgtgggctggagagatggctcagcggttaagagtacaga
ctgctctaccagaggtcctgacttcaattcccagtaaccacatgttggcc
cacaaccatctataatgggatctgataccctcttctggtgtgtctgaaga
cagcaacagtgtactcacatacataaaacaaataaatatatcttaaaaag
aaaagaagagaaaaggaaaggaaagaaaaaaggcttgcacatacgagaaa
gaagtaatgatggccctgtgcagtgactcttacatcgtctatcctctggc
tacagtagtgtaaccttcccacatacagaattcgttcacctcctcccaag
atccctaaaatccaaccaaagcccaatgtcttggcatcagtatcaggcat
gatgggagagaggatcctctggcctggagactggattaaagagacaagtt
ttcactgaacatggtgtacacatctgaaatcccagtgggtgggaggtaaa
ggcaagagaatcaggaatgcagttttagcctttggctgcatgtgagtgca
atgccagcccgggctgcaagaaacccagatcctaatgaacaaatgagagg
gatggcgaggagggtttttcccctcttgtgcctttccctttcttcagcgt
ggtgtacaatggggaacaggaatggctgaattaattgttcttgttcaaaa
ggggaaaggactaaggtgtgaaggataatatatattatatctatatat
gaattctgtgggatgttgagataattgaagtgctgtgtataggagtcctg
agcttgaagggggatgtgggctgagatgggcgagccctctgcttctgcaa
tgaaggctctttggccctaccttgacagctggcaagaccttaggagagac
cagagcgttcagggattcatctgagcattcaggggttcatccgagcttag
ctttgtgtccttgcccagggtctttgcaactcttaaaaccttgggtgata
tccttgtccaaggtgaaatcgacacagctacctgtggcagtcatgtagat
cctaacctgtagcctaaccccctctgagccacctcttactagcttctttc
tctttcttgtcttccagtccccaggaaagacagatcagatattgagtctt
cagtagcctctgttgacacccactgtccccacagcccataggcagcctct
gtggctggcagagtagcccaaatttgaagagtagcagttcccttcttcct
tcagcagagttggaaggtgtggtagggtatctggacactcctacccctgt
cctgagtttgtatctcacttgacagtgtcagggtaagctactgagggagt
aatgtaggcataggtttctgggctatggatatttggggataagagggtta
aaatttgtatctgagaaacaattcattctgggcagtcccagattgttttt
taattctttccagattgttcccagtggaaattaaaattctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106286385_106287371
seq2: B6Ng01-172J14.b_47_1044 (reverse)

seq1  ATATATATATATATATATATATTATCCTTCAC-CCTTTGTCCTT--CCCT  47
      ||||||| ||||| |||||||||||||||||| |||| ||||||  ||||
seq2  ATATATAGATATA-ATATATATTATCCTTCACACCTTAGTCCTTTCCCCT  49

seq1  TTTGAACAAGAAC-ATTTATTCAGCCA-TCCTGT--CCCATTGTACACCA  93
      ||||||||||||| ||| ||||||||| ||||||  ||||||||||||||
seq2  TTTGAACAAGAACAATTAATTCAGCCATTCCTGTTCCCCATTGTACACCA  99

seq1  CGCTGAAG-AAGGGAAAGGCACAAGA-GGGAAAAACCCTCCTCGCCATCC  141
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  CGCTGAAGAAAGGGAAAGGCACAAGAGGGGAAAAACCCTCCTCGCCATCC  149

seq1  CTCTCATTTGTTCATTAGGATCT-GGTTTCTTGCAGCCCGGGCTGGCATT  190
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTCTCATTTGTTCATTAGGATCTGGGTTTCTTGCAGCCCGGGCTGGCATT  199

seq1  GCACTCACATGCAGCC-AAGGCT-AAACTGCATTCCTGATTCTCTTGCCT  238
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  GCACTCACATGCAGCCAAAGGCTAAAACTGCATTCCTGATTCTCTTGCCT  249

seq1  TTACCTCCCACCCACTGGGATTTCAGATGTGTACACCATGTTCAGTGAAA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCCCACCCACTGGGATTTCAGATGTGTACACCATGTTCAGTGAAA  299

seq1  ACTTGTCTCTTTAATCCAGTCTCCAGGCCAGAGGATCCTCTCTCCCATCA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTCTTTAATCCAGTCTCCAGGCCAGAGGATCCTCTCTCCCATCA  349

seq1  TGCCTGATACTGATGCCAAGACATTGGGCTTTGGTTGGATTTTAGGGATC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGATACTGATGCCAAGACATTGGGCTTTGGTTGGATTTTAGGGATC  399

seq1  TTGGGAGGAGGTGAACGAATTCTGTATGTGGGAAGGTTACACTACTGTAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGAGGTGAACGAATTCTGTATGTGGGAAGGTTACACTACTGTAG  449

seq1  CCAGAGGATAGACGATGTAAGAGTCACTGCACAGGGCCATCATTACTTCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGATAGACGATGTAAGAGTCACTGCACAGGGCCATCATTACTTCT  499

seq1  TTCTCGTATGTGCAAGCCTTTTTTCTTTCCTTTCCTTTTCTCTTCTTTTC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGTATGTGCAAGCCTTTTTTCTTTCCTTTCCTTTTCTCTTCTTTTC  549

seq1  TTTTTAAGATATATTTATTTGTTTTATGTATGTGAGTACACTGTTGCTGT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGATATATTTATTTGTTTTATGTATGTGAGTACACTGTTGCTGT  599

seq1  CTTCAGACACACCAGAAGAGGGTATCAGATCCCATTATAGATGGTTGTGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACACACCAGAAGAGGGTATCAGATCCCATTATAGATGGTTGTGG  649

seq1  GCCAACATGTGGTTACTGGGAATTGAAGTCAGGACCTCTGGTAGAGCAGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACATGTGGTTACTGGGAATTGAAGTCAGGACCTCTGGTAGAGCAGT  699

seq1  CTGTACTCTTAACCGCTGAGCCATCTCTCCAGCCCACAAGCCTTTTTTTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTCTTAACCGCTGAGCCATCTCTCCAGCCCACAAGCCTTTTTTTT  749

seq1  CCTATCAAGAGGCTTTGTCTTTGTCTTCACCCTTGGCTCTGGACCTGTAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAAGAGGCTTTGTCTTTGTCTTCACCCTTGGCTCTGGACCTGTAT  799

seq1  CGATCAAATGACTGAAGCAGAAGAAAGCTGTGTGAGGCATTCTAATATCC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCAAATGACTGAAGCAGAAGAAAGCTGTGTGAGGCATTCTAATATCC  849

seq1  ATTTTTGCCCAAGAAGGAGCCATGTCAGAAAGTACAGGCTATTCACATAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCCCAAGAAGGAGCCATGTCAGAAAGTACAGGCTATTCACATAT  899

seq1  GTAATGGGGCAAGTTTACAAGGAGCTGAGCCAGAATCCCAGACGAGTCAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGGGCAAGTTTACAAGGAGCTGAGCCAGAATCCCAGACGAGTCAT  949

seq1  CTCAGCATGAAGACTGGAGAAGATCTGTGTGTGGAGCCCTCCTGAATTC  987
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATGAAGACTGGAGAAGATCTGTGTGTGGAGCCCTCCTGAATTC  998

seq1: chr11_106177221_106177954
seq2: B6Ng01-172J14.g_67_806

seq1  GAATTCTGTGGGATGTTGAGATAATTGAAGTGCTGTGTATAGGAGTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGGATGTTGAGATAATTGAAGTGCTGTGTATAGGAGTCCTG  50

seq1  AGCTTGAAGGGGGATGTGGGCTGAGATGGGCGAGCCCTCTGCTTCTGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAAGGGGGATGTGGGCTGAGATGGGCGAGCCCTCTGCTTCTGCAA  100

seq1  TGAAGGCTCTTTGGCCCTACCTTGACAGCTGGCAAGACCTTAGGAGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTCTTTGGCCCTACCTTGACAGCTGGCAAGACCTTAGGAGAGAC  150

seq1  CAGAGCGTTCAGGGATTCATCTGAGCATTCAGGGGTTCATCCGAGCTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCGTTCAGGGATTCATCTGAGCATTCAGGGGTTCATCCGAGCTTAG  200

seq1  CTTTGTGTCCTTGCCCAGGGTCTTTGCAACTCTTAAAACCTTGGGTGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTCCTTGCCCAGGGTCTTTGCAACTCTTAAAACCTTGGGTGATA  250

seq1  TCCTTGTCCAAGGTGAAATCGACACAGCTACCTGTGGCAGTCATGTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTCCAAGGTGAAATCGACACAGCTACCTGTGGCAGTCATGTAGAT  300

seq1  CCTAACCTGTAGCCTAACCCCCTCTGAGCCACCTCTTACTAGCTTCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCTGTAGCCTAACCCCCTCTGAGCCACCTCTTACTAGCTTCTTTC  350

seq1  TCTTTCTTGTCTTCCAGTCCCCAGGAAAGACAGATCAGATATTGAGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTGTCTTCCAGTCCCCAGGAAAGACAGATCAGATATTGAGTCTT  400

seq1  CAGTAGCCTCTGTTGACACCCACTGTCCCCACAGCCCATAGGCAGCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCCTCTGTTGACACCCACTGTCCCCACAGCCCATAGGCAGCCTCT  450

seq1  GTGGCTGGCAGAGTAGCCCAAATTTGAAGAGTAGCAGTTCCCTTCTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGGCAGAGTAGCCCAAATTTGAAGAGTAGCAGTTCCCTTCTTCCT  500

seq1  TCAGCAGAGTTGGAAGGTGTGGTAGGGTATCTGGACACTCCTACCCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAGTTGGAAGGTGTGGTAGGGTATCTGGACACTCCTACCCCTGT  550

seq1  CCTGAGTTTGTATCTCACTTGACAGTGTCAGGGTAAGCTACTGAGGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTTGTATCTCACTTGACAGTGTCAGGGTAAGCTACTGAGGGAGT  600

seq1  AATGTAGGCATAGG-TTCTGGGCTATGGATA-TTGGGGATAAGAGGGTT-  647
      |||||||||||||| |||||||||||||||| ||||||||||||||||| 
seq2  AATGTAGGCATAGGTTTCTGGGCTATGGATATTTGGGGATAAGAGGGTTA  650

seq1  AAATTTGTATCTGAGAAACAATTCATTCTGGGCAGTCCCAGA-TGTTTTT  696
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAATTTGTATCTGAGAAACAATTCATTCTGGGCAGTCCCAGATTGTTTTT  700

seq1  T-ATTCTTTCCAGA-TGTTCCCAGTGGAAACAAAAATTCT  734
      | |||||||||||| |||||||||||||||  ||||||||
seq2  TAATTCTTTCCAGATTGTTCCCAGTGGAAATTAAAATTCT  740