BAC Information

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BAC

Clone NameB6Ng01-173F09
Chromosome11 (Build37)
Map Location 114,930,564 - 115,051,248
singlet/doubletdoublet
Overlap geneCd300lf, Rab37, Slc9a3r1, Nat9, Tmem104
Upstream geneLOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e
Downstream geneGrin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173F09.bB6Ng01-173F09.g
ACCGA001706GA001707
length763991
definitionB6Ng01-173F09.b B6Ng01-173F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,930,564 - 114,931,325)(115,050,270 - 115,051,248)
sequence
gaattcagcacacacaaacacacaacagacacacacacacacatatgcac
aacacatattatatatgcctataattccagcattggggaggttgagacag
gaagaccttgggttcaagaccagcctggactacacaagtcactagctcaa
acacagagagctgggagtactcacacactttaaccccatcacttcagggg
cagaggcaggtggatctctttgagtttgaggtcagtctggtctatgtatt
aagttccaggccagtcagggccacataggaagactttgtctcaaatctca
aataacagtagcaatgataatagttgtaattataataaggacccctgttt
gctgagagactgctactgtatctattatctcatcccatgcagacaatcac
cttaaagcaggtttttctttttttctaaatgagtacactgtagctgtctt
taaacacactggaggagagcattggattccattacagatgggctgccatg
tggttgctgggaattgaactcaggacctttggaagaggagccagtgttct
taaccgctgagccatctctgtagtccctgacaaccaccttgaaagaagga
ccaattattatccccattttgcacaggagaaagctatactcttgagggag
ctgctgatcacactggaataagagccaatagccaccacccttcagtagtg
gtgcacacctttaatcctagcacttgggaggcagaggcaggcagaatttc
tgagtttgaggct
gaattccatacatttgtacacacaaaaattaaatatttaaaagaaaacaa
agacctataagaagaagagggctgctttcctcagaaccctgaccaccacc
tgattaacacccccctgtcgccaccagcacccatctttctcatctctctt
ccttcacaattaagataaaaacaaaatcacagtgcttgtttatggcaaag
tgcaaagaccccagataaagcacacagaagatgggaaggagaaaaggggg
aggtgtgtgaagcggagctcctgaggcacacaggcctaactgtccaggcg
gctgtggcatcacaaggtggcctgagtggatgattacatggtgaaggcac
aaggaatggggacataaggtactttctttctaaaacacagtcacagcaat
aactcacttcctcgtctccaagtctgtagtgagtgtcagaaaaagcagga
actgtggcaacgtgtagggacagtgcagacatcttcttgctgacagggga
ttctaagaactatcacatgattgcatggacagggtaaccatccactccag
cactttccctggtgagctgcagcggtgaagtgtgcatgcgtgtgtgtgtg
tctgtgtgtgtgtctgtgtgtgtctgtgtgtgctctgtggctgcctatga
acagcagggcactgctgagactagaaaaatcctaaaaaggcggcttgtgg
agaagagccgcttttcctggtgacagcaggtaccaatgtgagtcaaccca
ggtaactcacgatttacctccaacgacttacccagtgaaggccccgtgat
gcaataaccacataaccacaaccaactgggatacagcaccgagagaagat
aaactgagtgtgtgtgggggggagtgcaggggccacggagccgagacaga
gggaatcaatcgctcctaattgtcataattgctatgctctaccaaactgc
aattgggaagacttctgcagttcaccaccctctttccacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_114930564_114931325
seq2: B6Ng01-173F09.b_41_803

seq1  GAATTCAGCACACACAAACACACAACAGACACACACACACACATATGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACACACAAACACACAACAGACACACACACACACATATGCAC  50

seq1  AACACATATTATATATGCCTATAATTCCAGCATTGGGGAGGTTGAGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATATTATATATGCCTATAATTCCAGCATTGGGGAGGTTGAGACAG  100

seq1  GAAGACCTTGGGTTCAAGACCAGCCTGGACTACACAAGTCACTAGCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCTTGGGTTCAAGACCAGCCTGGACTACACAAGTCACTAGCTCAA  150

seq1  ACACAGAGAGCTGGGAGTACTCACACACTTTAACCCCATCACTTCAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAGCTGGGAGTACTCACACACTTTAACCCCATCACTTCAGGGG  200

seq1  CAGAGGCAGGTGGATCTCTTTGAGTTTGAGGTCAGTCTGGTCTATGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGTGGATCTCTTTGAGTTTGAGGTCAGTCTGGTCTATGTATT  250

seq1  AAGTTCCAGGCCAGTCAGGGCCACATAGGAAGACTTTGTCTCAAATCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCAGGCCAGTCAGGGCCACATAGGAAGACTTTGTCTCAAATCTCA  300

seq1  AATAACAGTAGCAATGATAATAGTTGTAATTATAATAAGGACCCCTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGTAGCAATGATAATAGTTGTAATTATAATAAGGACCCCTGTTT  350

seq1  GCTGAGAGACTGCTACTGTATCTATTATCTCATCCCATGCAGACAATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGACTGCTACTGTATCTATTATCTCATCCCATGCAGACAATCAC  400

seq1  CTTAAAGCAGGTTTTTCTTTTTTTCTAAATGAGTACACTGTAGCTGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGCAGGTTTTTCTTTTTTTCTAAATGAGTACACTGTAGCTGTCTT  450

seq1  TAAACACACTGGAGGAGAGCATTGGATTCCATTACAGATGGGCTGCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACACTGGAGGAGAGCATTGGATTCCATTACAGATGGGCTGCCATG  500

seq1  TGGTTGCTGGGAATTGAACTCAGGACCTTTGGAAGAGGAGCCAGTGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTGGGAATTGAACTCAGGACCTTTGGAAGAGGAGCCAGTGTTCT  550

seq1  TAACCGCTGAGCCATCTCTGTAGTCCCTGACAACCACCTTGAAAGAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCGCTGAGCCATCTCTGTAGTCCCTGACAACCACCTTGAAAGAAGGA  600

seq1  CCAATTATTATCCCCATTTTGCACAGGAGAAAGCTATACTCTTGAGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTATTATCCCCATTTTGCACAGGAGAAAGCTATACTCTTGAGGGAG  650

seq1  CTGCTGATCACACTGGAATAAGAGCCAATAGCCACCACCCTTCAGTAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGATCACACTGGAATAAGAGCCAATAGCCACCACCCTTCAGTAGTG  700

seq1  GTGCACACCTTTAATCCTAGCACTTGGGAGGCAGAGGCAGGCAG-ATTTC  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGCACACCTTTAATCCTAGCACTTGGGAGGCAGAGGCAGGCAGAATTTC  750

seq1  TGAGTTTGAGGCT  762
      |||||||||||||
seq2  TGAGTTTGAGGCT  763

seq1: chr11_115050270_115051248
seq2: B6Ng01-173F09.g_69_1054 (reverse)

seq1  GAAAGA-GGTGGTGAACTGCAG-AGTC-TCCCAATTGCAGTTTGGTAGAG  47
      |||||| ||||||||||||||| |||| ||||||||||||||||||||||
seq2  GAAAGAGGGTGGTGAACTGCAGAAGTCTTCCCAATTGCAGTTTGGTAGAG  50

seq1  CAT-GCAATTATGACAATTA-GAGCGATTGATTCCCCTCTGTCTCGGCTC  95
      ||| |||||||||||||||| |||||||||||| ||||||||||||||||
seq2  CATAGCAATTATGACAATTAGGAGCGATTGATT-CCCTCTGTCTCGGCTC  99

seq1  CGTGGCCCCTGCACT-CCCCCCACACACACTCAGTTTATCTTCTCTCGGT  144
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CGTGGCCCCTGCACTCCCCCCCACACACACTCAGTTTATCTTCTCTCGGT  149

seq1  GCTGTAT-CCAGTTGGTTGTGGTTATGTGGTTATTGCATCACGGGGCCTT  193
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATCCCAGTTGGTTGTGGTTATGTGGTTATTGCATCACGGGGCCTT  199

seq1  CACTGGGTAAGTCGTTGGAGGT-AATCGTGAGTTACCTGGGTTGACTCAC  242
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CACTGGGTAAGTCGTTGGAGGTAAATCGTGAGTTACCTGGGTTGACTCAC  249

seq1  ATTGGTACCTGCTGTCACCAGGAAAAGCGGCTCTTCTCCACAAGCCGCCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTACCTGCTGTCACCAGGAAAAGCGGCTCTTCTCCACAAGCCGCCT  299

seq1  TTTTAGGATTTTTCTAGTCTCAGCAGTGCCCTGCTGTTCATAGGCAGCCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGATTTTTCTAGTCTCAGCAGTGCCCTGCTGTTCATAGGCAGCCA  349

seq1  CAGAGCACACACAGACACACACAGACACACACACAGACACACACACACGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCACACACAGACACACACAGACACACACACAGACACACACACACGC  399

seq1  ATGCACACTTCACCGCTGCAGCTCACCAGGGAAAGTGCTGGAGTGGATGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACTTCACCGCTGCAGCTCACCAGGGAAAGTGCTGGAGTGGATGG  449

seq1  TTACCCTGTCCATGCAATCATGTGATAGTTCTTAGAATCCCCTGTCAGCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTGTCCATGCAATCATGTGATAGTTCTTAGAATCCCCTGTCAGCA  499

seq1  AGAAGATGTCTGCACTGTCCCTACACGTTGCCACAGTTCCTGCTTTTTCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGTCTGCACTGTCCCTACACGTTGCCACAGTTCCTGCTTTTTCT  549

seq1  GACACTCACTACAGACTTGGAGACGAGGAAGTGAGTTATTGCTGTGACTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCACTACAGACTTGGAGACGAGGAAGTGAGTTATTGCTGTGACTG  599

seq1  TGTTTTAGAAAGAAAGTACCTTATGTCCCCATTCCTTGTGCCTTCACCAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGAAAGAAAGTACCTTATGTCCCCATTCCTTGTGCCTTCACCAT  649

seq1  GTAATCATCCACTCAGGCCACCTTGTGATGCCACAGCCGCCTGGACAGTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCATCCACTCAGGCCACCTTGTGATGCCACAGCCGCCTGGACAGTT  699

seq1  AGGCCTGTGTGCCTCAGGAGCTCCGCTTCACACACCTCCCCCTTTTCTCC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGTGTGCCTCAGGAGCTCCGCTTCACACACCTCCCCCTTTTCTCC  749

seq1  TTCCCATCTTCTGTGTGCTTTATCTGGGGTCTTTGCACTTTGCCATAAAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATCTTCTGTGTGCTTTATCTGGGGTCTTTGCACTTTGCCATAAAC  799

seq1  AAGCACTGTGATTTTGTTTTTATCTTAATTGTGAAGGAAGAGAGATGAGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTGTGATTTTGTTTTTATCTTAATTGTGAAGGAAGAGAGATGAGA  849

seq1  AAGATGGGTGCTGGTGGCGACAGGGGGGTGTTAATCAGGTGGTGGTCAGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGGTGCTGGTGGCGACAGGGGGGTGTTAATCAGGTGGTGGTCAGG  899

seq1  GTTCTGAGGAAAGCAGCCCTCTTCTTCTTATAGGTCTTTGTTTTCTTTTA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGGAAAGCAGCCCTCTTCTTCTTATAGGTCTTTGTTTTCTTTTA  949

seq1  AATATTTAATTTTTGTGTGTACAAATGTATGGAATTC  979
      |||||||||||||||||||||||||||||||||||||
seq2  AATATTTAATTTTTGTGTGTACAAATGTATGGAATTC  986