BAC Information

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BAC

Clone NameB6Ng01-174G03
Chromosome11 (Build37)
Map Location 3,865,056 - 4,075,995
singlet/doubletdoublet
Overlap genePes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720
Downstream geneTbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174G03.bB6Ng01-174G03.g
ACCGA002478GA002479
length710617
definitionB6Ng01-174G03.b B6Ng01-174G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,865,056 - 3,865,765)(4,075,379 - 4,075,995)
sequence
gaattccacggccagtaggaaagagaggcaggtggtgtgcagggttttgg
acagacagtagcatggctgtgagatgtaaataagtgaggtgctgtctagg
tgaggctggggccgtatcatgtgaggctggaacttattctgagtggagaa
gacaaagaaagtaagtgacttgatctgagttattcttgcttctgtaagga
gactgtgggtatgaagtaactttgggataggaatgaagaagatgagatgg
gctcaagtctttcctttgacttgcaagtttctggtaacaatctgctttgt
tgtttttaattactttttttaaagttattttttatttatttttatgtata
tgagtgctctatctgcatgtatacccgcatgccagaatagggcatcagat
ctcattatggatggttgtgagccacaatgtggttgctgggaattgaactc
tgaacctctggaagagcagccagttctcttaaccacggagccatctcccc
agcccctttaattacttttttgagactataattgcattattccccctttc
cctccaaacctttccatatattctcacttgctctccttcaaattcatggc
ctctttttaaaatgatttttatataacatagtatatatatgttcctaaat
acataaatacacctgctatatactagtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtc
gaattctcttaagcagaccaggctggcctcgaacttacagagatccaact
gcctctggctccagagtgctgggctaaaggtgtgcaccacctcatccagt
cctatccttctgctttatacttggcagtgagactaattagtgagtgtcac
tcaaggagctttaaccacaagttcaaaagaacaaaggaataaatattccg
attgctagatcttgttattggataccagcagacaagtgacatccctgcca
gtgccagattttggaggattcctctacagtgtcctgggaaatacatacat
cctttgcaatatcataggctatacctacctacctcccaaactctcattga
ccgaaaccattttgtatctgcataaaagaagctacaggctgggagcctcc
atcccatctcacctggtgcataaacctcatcatcactctgcttctctcgg
atggagcggtcccgctgctccagccagcgggggtcaagaagcccaatgcg
catgtgctcctgcattttgctggcaggaatcttctccccagtgatggggg
atacaagatactcatcgggagcaggggctggagggaggggcttggaagct
agaggaaacagatgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3865056_3865765
seq2: B6Ng01-174G03.b_36_745

seq1  GAATTCCACGGCCAGTAGGAAAGAGAGGCAGGTGGTGTGCAGGGTTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGCCAGTAGGAAAGAGAGGCAGGTGGTGTGCAGGGTTTTGG  50

seq1  ACAGACAGTAGCATGGCTGTGAGATGTAAATAAGTGAGGTGCTGTCTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGTAGCATGGCTGTGAGATGTAAATAAGTGAGGTGCTGTCTAGG  100

seq1  TGAGGCTGGGGCCGTATCATGTGAGGCTGGAACTTATTCTGAGTGGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGGGGCCGTATCATGTGAGGCTGGAACTTATTCTGAGTGGAGAA  150

seq1  GACAAAGAAAGTAAGTGACTTGATCTGAGTTATTCTTGCTTCTGTAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGAAAGTAAGTGACTTGATCTGAGTTATTCTTGCTTCTGTAAGGA  200

seq1  GACTGTGGGTATGAAGTAACTTTGGGATAGGAATGAAGAAGATGAGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGGGTATGAAGTAACTTTGGGATAGGAATGAAGAAGATGAGATGG  250

seq1  GCTCAAGTCTTTCCTTTGACTTGCAAGTTTCTGGTAACAATCTGCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGTCTTTCCTTTGACTTGCAAGTTTCTGGTAACAATCTGCTTTGT  300

seq1  TGTTTTTAATTACTTTTTTTAAAGTTATTTTTTATTTATTTTTATGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAATTACTTTTTTTAAAGTTATTTTTTATTTATTTTTATGTATA  350

seq1  TGAGTGCTCTATCTGCATGTATACCCGCATGCCAGAATAGGGCATCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTCTATCTGCATGTATACCCGCATGCCAGAATAGGGCATCAGAT  400

seq1  CTCATTATGGATGGTTGTGAGCCACAATGTGGTTGCTGGGAATTGAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATGGATGGTTGTGAGCCACAATGTGGTTGCTGGGAATTGAACTC  450

seq1  TGAACCTCTGGAAGAGCAGCCAGTTCTCTTAACCACGGAGCCATCTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTCTGGAAGAGCAGCCAGTTCTCTTAACCACGGAGCCATCTCCCC  500

seq1  AGCCCCTTTAATTACTTTTTTGAGACTATAATTGCATTATTCCCCCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTTTAATTACTTTTTTGAGACTATAATTGCATTATTCCCCCTTTC  550

seq1  CCTCCAAACCTTTCCATATATTCTCACTTGCTCTCCTTCAAATTCATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAACCTTTCCATATATTCTCACTTGCTCTCCTTCAAATTCATGGC  600

seq1  CTCTTTTTAAAATGATTTTTATATAACATAGTATATATATGTTCCTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTAAAATGATTTTTATATAACATAGTATATATATGTTCCTAAAT  650

seq1  ACATAAATACACCTGCTATATACTAGTGTGTGTGTGTGTGTGTGTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATACACCTGCTATATACTAGTGTGTGTGTGTGTGTGTGTGTGTG  700

seq1  TGTGTGTGTC  710
      ||||||||||
seq2  TGTGTGTGTC  710

seq1: chr11_4075379_4075995
seq2: B6Ng01-174G03.g_68_684 (reverse)

seq1  AGACATCTGTTTCCTCTAGCTTCCAAGCCCCTCCCTCCAGCCCCTGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCTGTTTCCTCTAGCTTCCAAGCCCCTCCCTCCAGCCCCTGCTCC  50

seq1  CGATGAGTATCTTGTATCCCCCATCACTGGGGAGAAGATTCCTGCCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGAGTATCTTGTATCCCCCATCACTGGGGAGAAGATTCCTGCCAGCA  100

seq1  AAATGCAGGAGCACATGCGCATTGGGCTTCTTGACCCCCGCTGGCTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGGAGCACATGCGCATTGGGCTTCTTGACCCCCGCTGGCTGGAG  150

seq1  CAGCGGGACCGCTCCATCCGAGAGAAGCAGAGTGATGATGAGGTTTATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGGACCGCTCCATCCGAGAGAAGCAGAGTGATGATGAGGTTTATGC  200

seq1  ACCAGGTGAGATGGGATGGAGGCTCCCAGCCTGTAGCTTCTTTTATGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTGAGATGGGATGGAGGCTCCCAGCCTGTAGCTTCTTTTATGCAG  250

seq1  ATACAAAATGGTTGCGGTCAATGAGAGTTTGGGAGGTAGGTAGGTATAGC  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATACAAAATGGTTTCGGTCAATGAGAGTTTGGGAGGTAGGTAGGTATAGC  300

seq1  CTATGATATTGCAAAGGATGTATGTATTTCCCAGGACACTGTAGAGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATATTGCAAAGGATGTATGTATTTCCCAGGACACTGTAGAGGAAT  350

seq1  CCTCCAAAATCTGGCACTGGCAGGGATGTCACTTGTCTGCTGGTATCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAAATCTGGCACTGGCAGGGATGTCACTTGTCTGCTGGTATCCAA  400

seq1  TAACAAGATCTAGCAATCGGAATATTTATTCCTTTGTTCTTTTGAACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGATCTAGCAATCGGAATATTTATTCCTTTGTTCTTTTGAACTTG  450

seq1  TGGTTAAAGCTCCTTGAGTGACACTCACTAATTAGTCTCACTGCCAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAAGCTCCTTGAGTGACACTCACTAATTAGTCTCACTGCCAAGTA  500

seq1  TAAAGCAGAAGGATAGGACTGGATGAGGTGGTGCACACCTTTAGCCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGAAGGATAGGACTGGATGAGGTGGTGCACACCTTTAGCCCAGC  550

seq1  ACTCTGGAGCCAGAGGCAGTTGGATCTCTGTAAGTTCGAGGCCAGCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGAGCCAGAGGCAGTTGGATCTCTGTAAGTTCGAGGCCAGCCTGG  600

seq1  TCTGCTTAAGAGAATTC  617
      |||||||||||||||||
seq2  TCTGCTTAAGAGAATTC  617