BAC Information

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BAC

Clone NameB6Ng01-175I05
Chromosome11 (Build37)
Map Location 115,189,988 - 115,191,007
singlet/doubletsinglet
Overlap geneOtop2
Upstream geneLOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Ush1g
Downstream geneOtop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175I05.g
ACCGA003297
length1,030
definitionB6Ng01-175I05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtgctgtctaggccccccagggcctccgcaaatgcctcttttg
gccccaggtactgtggagtcaaactcaggttctcacgcctgtgtgccaag
gacctttccaaactgagtgaggcttctctccctgcaccaggtttttgtta
ctttgtatctttagcacggcctggtcttgcagtgtctggcacaatgacta
attatggactgaatggagatgccagagtgaagtcctttgggctggcagaa
agaacccctggcctcgcggaggctagcatccggtcctgtgtccttctctc
cacagcaaagcgtgcaggaggtgcagctgaagaagacccgtgcctctgca
gcacagccatctgtcagatcttccagcaaggctatttctacctgtatccc
ttcaacatcgagtacagcctctttgcttccaccatgctgtatgtcatgtg
gaagaatgtgggaaggctgctcgcctccacccacggccacggccacacac
cgtccagggtcagcctgttccgggagaccttctttgccggcccagtcttg
ggcctgctcctctttgtggtggggttggctgtcttcatcctttatgaggt
ccaggtgagtggagagagaggccacacccgacaggccctggtcatctact
acagctttaacattgtctgtctggggctcatgactctggtcagcctgagt
ggttcagtcatctatcgttttgaccgtcgggccatggaccatcataaaga
acccgacacggaccctggatgtggccctgctaatgggcgccgccctgggc
caatacgctatctcctactactctatcggggctgtggtggtggggctctc
ccagagacctgcagggggcgctcaacctgtcccacgctctactcatgatc
gctcagcacaacttttcagattgtcttcatcattgtaaagcctccatcgg
ggaacctccctgggggctgagccctcgtgaatgccctccaaaggaagccc
tgccaaagtcatcacctttgctaacttgga
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115189988_115191007
seq2: B6Ng01-175I05.g_65_1094

seq1  GAATTCAGTGCTGTCTAGGCCCCCCAGGGCCTCCGCAAATGCCTCTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTGTCTAGGCCCCCCAGGGCCTCCGCAAATGCCTCTTTTG  50

seq1  GCCCCAGGTACTGTGGAGTCAAACTCAGGTTCTCACGCCTGTGTGCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGTACTGTGGAGTCAAACTCAGGTTCTCACGCCTGTGTGCCAAG  100

seq1  GACCTTTCCAAACTGAGTGAGGCTTCTCTCCCTGCACCAGGTTTTTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTCCAAACTGAGTGAGGCTTCTCTCCCTGCACCAGGTTTTTGTTA  150

seq1  CTTTGTATCTTTAGCACGGCCTGGTCTTGCAGTGTCTGGCACAATGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATCTTTAGCACGGCCTGGTCTTGCAGTGTCTGGCACAATGACTA  200

seq1  ATTATGGACTGAATGGAGATGCCAGAGTGAAGTCCTTTGGGCTGGCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGACTGAATGGAGATGCCAGAGTGAAGTCCTTTGGGCTGGCAGAA  250

seq1  AGAACCCCTGGCCTCGCGGAGGCTAGCATCCGGTCCTGTGTCCTTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCCTGGCCTCGCGGAGGCTAGCATCCGGTCCTGTGTCCTTCTCTC  300

seq1  CACAGCAAAGCGTGCAGGAGGTGCAGCTGAAGAAGACCCGTGCCTCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAAAGCGTGCAGGAGGTGCAGCTGAAGAAGACCCGTGCCTCTGCA  350

seq1  GCACAGCCATCTGTCAGATCTTCCAGCAAGGCTATTTCTACCTGTATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCCATCTGTCAGATCTTCCAGCAAGGCTATTTCTACCTGTATCCC  400

seq1  TTCAACATCGAGTACAGCCTCTTTGCTTCCACCATGCTGTATGTCATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCGAGTACAGCCTCTTTGCTTCCACCATGCTGTATGTCATGTG  450

seq1  GAAGAATGTGGGAAGGCTGCTCGCCTCCACCCACGGCCACGGCCACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGTGGGAAGGCTGCTCGCCTCCACCCACGGCCACGGCCACACAC  500

seq1  CGTCCAGGGTCAGCCTGTTCCGGGAGACCTTCTTTGCCGGCCCAGTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCAGGGTCAGCCTGTTCCGGGAGACCTTCTTTGCCGGCCCAGTCTTG  550

seq1  GGCCTGCTCCTCTTTGTGGTGGGGTTGGCTGTCTTCATCCTTTATGAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCTCCTCTTTGTGGTGGGGTTGGCTGTCTTCATCCTTTATGAGGT  600

seq1  CCAGGTGAGTGGAGAGAGAGGCCACACCCGACAGGCCCTGGTCATCTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGAGTGGAGAGAGAGGCCACACCCGACAGGCCCTGGTCATCTACT  650

seq1  ACAGCTTTAACATTGTCTGTCTGGGGCTCATGACTCTGGTCAGCCTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTAACATTGTCTGTCTGGGGCTCATGACTCTGGTCAGCCTGAGT  700

seq1  GGTTCAGTCATCTATCGTTTTGACCGTCGGGCCATGGACCATCAT-AAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTTCAGTCATCTATCGTTTTGACCGTCGGGCCATGGACCATCATAAAGA  750

seq1  ACCCGACACGGACCCTGGATGTGGCCCTGCTAATGGGCGCCGCCCTGGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGACACGGACCCTGGATGTGGCCCTGCTAATGGGCGCCGCCCTGGGC  800

seq1  CAATACGCTATCTCCTACTACTCTATCGTGGCTGTGGTGGT-GGGCTCTC  848
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  CAATACGCTATCTCCTACTACTCTATCGGGGCTGTGGTGGTGGGGCTCTC  850

seq1  CCAGAGACCTGCAGGGGGCGCTCAACCTGTCCCACGCTCTACTCATGATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACCTGCAGGGGGCGCTCAACCTGTCCCACGCTCTACTCATGATC  900

seq1  GCTCAGCAC-ACCTTCCAGAATGTCTTCATCATTG-AGAGCCTCCATCGG  946
      ||||||||| || || |||| |||||||||||||| | ||||||||||||
seq2  GCTCAGCACAACTTTTCAGATTGTCTTCATCATTGTAAAGCCTCCATCGG  950

seq1  GG-ACCTCC--TGGGGCTGAG-CCTCGTGAAATGCCCCCCAA--GGAGCC  990
      || ||||||   ||||||||| ||||||| ||||||| ||||  | ||||
seq2  GGAACCTCCCTGGGGGCTGAGCCCTCGTG-AATGCCCTCCAAAGGAAGCC  999

seq1  CTGCC-AAGGCATCACCTTTGCTAACCTGGA  1020
      ||||| ||| |||||||||||||||| ||||
seq2  CTGCCAAAGTCATCACCTTTGCTAACTTGGA  1030